User: Suk211

gravatar for Suk211
Suk2111.0k
Reputation:
1,020
Status:
New User
Location:
state college
Website:
http://twitter.com/suk211
Last seen:
6 years, 4 months ago
Joined:
8 years, 1 month ago
Email:
s**************@gmail.com

interested systems biology,protein folding ,genomics

Posts by Suk211

<prev • 20 results • page 1 of 2 • next >
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Answer: A: Error Running Modeller 9 V8 On Pc
... Hi Priya; As Bio_X2Y has pointed out, you will have to use python script to run the Modeller.alignment file will be passed to the subroutine inside that python script, where model will be built. I will encourage you to follow the tutorial. ...
written 6.7 years ago by Suk2111.0k
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4
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Answer: A: Supersecondary Structure Prediction
... If you have the PDB file for your protein of interest, you can use promotif to calculate the super secondary structures. ...
written 6.8 years ago by Suk2111.0k
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Answer: A: Bio-Informatics Results Supporting Ongoing Evolution
... Statistical distribution of amino acid sequences: a proof of Darwinian evolution ...
written 6.9 years ago by Suk2111.0k
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Answer: A: Is There A 'Best' Molecular Dynamics Software? How Is Each Different?
... "Molecular dynamics software predicts interaction between molecules" Not quite, it's the Force field which will determine the dynamics of the protein system you are interested in. You can use any package(GROMACS/CHARMM/AMBER/NAMD/LAMPPS) but at the end it will depend upon the force field and the wat ...
written 6.9 years ago by Suk2111.0k
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Answer: A: How Do Pathway Databases Compare?
... I have never used BRENDA , but have heard it's more comprehensive compared to other pathway databases. ...
written 7.0 years ago by Suk2111.0k
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2.8k
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Answer: A: Locations Of Plots Of Quantities Of Publicly Available Biological Data
... SCOP has listed out the statistics of it's release history in tabular form from last 12 years. Scop Classification Statistics I agree with Khader that PDB has done excellent job to report the statistics on it's entries. They have something called histogram menu which can easily generate statistics o ...
written 7.1 years ago by Suk2111.0k
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Answer: A: Problem Creating Pdb Mirror
... I tried this command and I can download the PDB files using rsync. "rsync -rlpt -v -z --delete --port=33444 rsync.wwpdb.org::ftp_data/structures/divided/pdb/ ./pdb " [suk211@statmech7 test]$ rsync -rlpt -v -z --delete --port=33444 \ > rsync.wwpdb.org::ftp_data/structures/divided/pdb/ ./pdb rece ...
written 7.1 years ago by Suk2111.0k • updated 7.1 years ago by Egon Willighagen5.1k
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Answer: A: Biostar Flyer For Outreach
... The only comment from my side is that all the question shown on the flyer might give the impression of Biostar being a genomics related site. I will suggest to put other questions which have been asked earlier,related to structural bioinformatics and systems biology. ...
written 7.1 years ago by Suk2111.0k
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Answer: A: How Would You Define If A Peptide Is Exposed At The Surface Of A Protein?
... I think without knowing the structure it will be difficult to carry out this prediction but I hope this webserver might be of some help: HSEpred: predict half-sphere exposure from protein sequences ...
written 7.5 years ago by Suk2111.0k • updated 7.5 years ago by Istvan Albert ♦♦ 74k
37
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9
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2.0k
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11 follow
9
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Regarding Datamining/Knowledge Based Algorithm
... I am quite fascinated by the field of data mining and it's application in solving biological problems . I have read lot of papers in past few months where people have tried to answer range of problems like predicting protein-protein interaction sites,post translational modification sites, disordered ...
data prediction algorithm written 7.5 years ago by Suk2111.0k • updated 7.5 years ago by Aleksandr Levchuk3.1k

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