User: Suk211
Suk211 • 1.0k
- Reputation:
- 1,020
- Status:
- New User
- Location:
- state college
- Website:
- http://twitter.com/suk211
- Last seen:
- 6 years, 9 months ago
- Joined:
- 8 years, 6 months ago
- Email:
- s**************@gmail.com
interested systems biology,protein folding ,genomics
Posts by Suk211
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... Hi Priya;
As Bio_X2Y has pointed out, you will have to use python script to run the Modeller.alignment file will be passed to the subroutine inside that python script, where model will be built. I will encourage you to follow the tutorial. ...
written 7.1 years ago by
Suk211 • 1.0k
1
vote
4
answers
2.5k
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4
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... If you have the PDB file for your protein of interest, you can use promotif to calculate the super secondary structures. ...
written 7.2 years ago by
Suk211 • 1.0k
10
votes
6
answers
2.4k
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6
answers
... Statistical distribution of amino acid sequences: a proof of Darwinian evolution ...
written 7.3 years ago by
Suk211 • 1.0k
4
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5
answers
19k
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5
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... "Molecular dynamics software predicts interaction between molecules"
Not quite, it's the Force field which will determine the dynamics of the protein system you are interested in. You can use any package(GROMACS/CHARMM/AMBER/NAMD/LAMPPS) but at the end it will depend upon the force field and the wat ...
written 7.3 years ago by
Suk211 • 1.0k
2
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10
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11k
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10
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... I have never used BRENDA , but have heard it's more comprehensive compared to other pathway databases. ...
written 7.4 years ago by
Suk211 • 1.0k
3
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9
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3.0k
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9
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... SCOP has listed out the statistics of it's release history in tabular form from last 12 years.
Scop Classification Statistics
I agree with Khader that PDB has done excellent job to report the statistics on it's entries. They have something called histogram menu which can easily generate statistics o ...
written 7.5 years ago by
Suk211 • 1.0k
2
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1
answer
2.1k
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1
answers
Answer:
A: Problem Creating Pdb Mirror
... I tried this command and I can download the PDB files using rsync.
"rsync -rlpt -v -z --delete --port=33444
rsync.wwpdb.org::ftp_data/structures/divided/pdb/ ./pdb "
[suk211@statmech7 test]$ rsync -rlpt -v -z --delete --port=33444 \
> rsync.wwpdb.org::ftp_data/structures/divided/pdb/ ./pdb
rece ...
written 7.5 years ago by
Suk211 • 1.0k
• updated
7.5 years ago by
Egon Willighagen ♦ 5.2k
4
votes
7
answers
2.9k
views
7
answers
Answer:
A: Biostar Flyer For Outreach
... The only comment from my side is that all the question shown on the flyer might give the impression of Biostar being a genomics related site. I will suggest to put other questions which have been asked earlier,related to structural bioinformatics and systems biology. ...
written 7.5 years ago by
Suk211 • 1.0k
2
votes
7
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5.0k
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7
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... I think without knowing the structure it will be difficult to carry out this prediction but I hope this webserver might be of some help:
HSEpred: predict half-sphere exposure from protein sequences ...
written 7.9 years ago by
Suk211 • 1.0k
• updated
7.9 years ago by
Istvan Albert ♦♦ 76k
37
votes
9
answers
2.2k
views
11 follow
9
answers
... I am quite fascinated by the field of data mining and it's application in solving biological problems . I have read lot of papers in past few months where people have tried to answer range of problems like predicting protein-protein interaction sites,post translational modification sites, disordered ...
written 7.9 years ago by
Suk211 • 1.0k
• updated
7.9 years ago by
Aleksandr Levchuk ♦ 3.1k
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