Moderator: genomax

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genomax59k
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Posts by genomax

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Comment: C: How can I set up dates with format yyyy-M in beauti?
... Looking at the format specification given in the screenshot above, it looks like you have to add some numeric value for `dd` (`yyyy-mm-dd`) for it to pass validity check. ...
written 12 hours ago by genomax59k
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Comment: C: How to select one gene at a CpG site?
... Please provide an example site and the genes you see. ...
written 13 hours ago by genomax59k
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Comment: C: High no feature counts in ht-seq counts
... I think this is a point where access to your data/analysis may be needed to figure out what is going on. A forum is not the best place to do that. Perhaps someone else may be along with suggestions on other things to try. ...
written 18 hours ago by genomax59k
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Comment: C: umi_tools extract error: IndexError: string index out of range
... Please start a new thread if you have a new question. ...
written 19 hours ago by genomax59k
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Comment: C: High no feature counts in ht-seq counts
... Only thing I can think of is the annotation file you downloaded is either not in the correct format or has some other errors in it. ...
written 19 hours ago by genomax59k
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Comment: C: High no feature counts in ht-seq counts
... Please use to post the images properly : https://www.biostars.org/p/309884/ Looking at the images it does look like you have reads aligning to all regions so not sure why they are not being counted. Can you use "unstranded" counting option to see if you are able to get read counts to go up? ...
written 20 hours ago by genomax59k
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Comment: C: How to remove special characters from text files?
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work. ![Upvote|Bookmark|Accept][1] Please do the same for your previous posts as well. [1]: http://i68.tinypic.com/2m2ykjr.png ...
written 1 day ago by genomax59k
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Comment: C: How to remove special characters from text files?
... Don't ask unrelated/new questions in existing threads. Consider opening a new thread, if you are not able to find a previous answer by searching. ...
written 1 day ago by genomax59k
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Comment: C: Script for changing genes nomenclature
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work. ![Upvote|Bookmark|Accept][1] [1]: http://i68.tinypic.com/2m2ykjr.png ...
written 1 day ago by genomax59k
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Comment: C: Amplicon Sequencing samples identification
... You have no information about key-pairs for Samples = Indexes? ...
written 1 day ago by genomax59k

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Teacher 4 days ago, created an answer with at least 3 up-votes. For C: Have bbduk retain quality scores in output after kmer trimming
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