Admin: GenoMax
GenoMax ♦ 94k
- Reputation:
- 94,310
- Status:
- Trusted
- Location:
- United States
- Last seen:
- 10 minutes ago
- Joined:
- 5 years, 7 months ago
- Email:
- g*******@gmail.com
Posts by GenoMax
<prev
• 16,773 results •
page 1 of 1678 •
next >
0
votes
0
answers
28
views
0
answers
... Take a look at this resource: https://outbreak.info/
In any case, patient metadata is unlikely to be available publicly due to privacy reasons. ...
written 2 hours ago by
GenoMax ♦ 94k
1
vote
1
answer
35
views
1
answers
Answer:
A: What types of acc. no. exist?
... This is a [good summary][1] of all GenBank accession numbers. UniProt accession numbers are described [at this link][2]. `5YFE` is a PDB ID. These databases cross-reference data where possible to facilitate linking information together.
[1]: https://community.gep.wustl.edu/repository/course_mate ...
written 6 hours ago by
GenoMax ♦ 94k
1
vote
1
answer
136
views
1
answers
... I have moved a comment (that was able to keep the flow of the thought process) to an answer. You can accept it providing closure to this thread. ...
written 6 hours ago by
GenoMax ♦ 94k
0
votes
0
answers
37
views
0
answers
... > I know tools such as Kraken can be used to identify contamination
Likely not useful when species are so closely related.
Do you have your own sequence data for the species you mention? Take a look at `RemoveHuman.sh` from BBMap suite which is described [in this thread][1]. It is going to be ...
written 7 hours ago by
GenoMax ♦ 94k
1
vote
1
answer
106
views
1
answers
... Introduction sections for the papers have cross-references that you will likely find useful. `hash` ([LINK][1]) describes the original technique for large scale-sequence comparisons.
> we even can use k-mer sequencing for determining whether two strings are similar or not.
Not sure what you ex ...
written 8 hours ago by
GenoMax ♦ 94k
0
votes
1
answer
106
views
1
answers
... Guess you have not looked at links for the two papers I posted in my comment above. ...
written 9 hours ago by
GenoMax ♦ 94k
0
votes
1
answer
106
views
1
answers
... If you intend to identify genes then using this toy example is inappropriate. One would need to use much longer k-mers. [This paper][1] may help provide some background reference materials. [One more][2] tool.
[1]: https://www.frontiersin.org/articles/10.3389/fmicb.2020.02067/full
[2]: https:/ ...
written 22 hours ago by
GenoMax ♦ 94k
0
votes
0
answers
43
views
0
answers
Comment:
C: Issue when merging FastQ
... I am not sure what aligner you are using. Perhaps it is paying attention to fastq headers and having `R2` headers show up in `R1 files may be an issue for it.
> I was thinking that by doing cat file1_R1.gz file1_R2.gz > outfil1.gz
> , tthen map this file and then by removing duplicates it ...
written 1 day ago by
GenoMax ♦ 94k
0
votes
0
answers
43
views
0
answers
Comment:
C: Issue when merging FastQ
... > have been merging 2 paired-end fastq files using
Just to be sure, you are merging `R1` and `R2` files independently and in the same order e.g. `cat file1_R1.gz file2_R1.gz ..` and `cat file1_R2.gz file2_R2.gz ..`? You can't do `cat file1_R1.gz file1_R2.gz`. ...
written 1 day ago by
GenoMax ♦ 94k
0
votes
1
answer
156
views
1
answers
... This is NOT the official BBTools repository. Official BBMap distribution is located at [SourceForge][1].
Once you download and extract BBMap (from official repo), `resources` directory will be inside the uncompressed BBMap folder.
[1]: https://sourceforge.net/projects/bbmap/ ...
written 2 days ago by
GenoMax ♦ 94k
Latest awards to GenoMax
Scholar
5 hours ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Scholar
1 day ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Good Answer
1 day ago,
created an answer that was upvoted at least 5 times.
For A: how to combine RNA seq data from 4 lanes
Appreciated
1 day ago,
created a post with more than 5 votes.
For Inviting NEW Biostars moderators to join Biostars slack channel
Scholar
4 days ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Good Answer
4 days ago,
created an answer that was upvoted at least 5 times.
For C: How to analyze Illumina RNASeq data
Scholar
5 days ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Scholar
6 days ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Scholar
6 days ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Appreciated
8 days ago,
created a post with more than 5 votes.
For Inviting NEW Biostars moderators to join Biostars slack channel
Appreciated
8 days ago,
created a post with more than 5 votes.
For Inviting NEW Biostars moderators to join Biostars slack channel
Scholar
9 days ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Commentator
13 days ago,
created a comment with at least 3 up-votes.
For C: Google genomics cloud platform ?
Scholar
13 days ago,
created an answer that has been accepted.
For A: Identify FASTQ files containing multiple DNA sequences based on specific sequen
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1913 users visited in the last hour