Admin: genomax

gravatar for genomax
genomax85k
Reputation:
85,000
Status:
Trusted
Location:
United States
Last seen:
4 hours ago
Joined:
5 years ago
Email:
g*******@gmail.com

Posts by genomax

<prev • 15,098 results • page 1 of 1510 • next >
0
votes
3
answers
622
views
3
answers
Comment: C: cellranger count help
... If this is 10x data then one of the smaller files (should be re-named `R1`) will contain `cell barcodes+UMI`. Other small file should have Illumina indexes (should be re-named `I1`). Final file should have the actual read data (largest, should be re-named as `R2`). If you post the SRR# I can take a ...
written 7 hours ago by genomax85k
1
vote
0
answers
109
views
0
answers
Comment: C: QC prior to bacterial genome assembly
... Don't set an auto-delete time, if you were doing that. BTW: Data looks reasonable. If the adapters are gone then you can try doing the assembly. ...
written 11 hours ago by genomax85k
0
votes
1
answer
64
views
1
answers
Comment: C: NCBI wants to remove quality scores from SRA
... And that is what may happen. I am sure NCBI does not want to spend umpteenth compute cycles reprocessing data. ...
written 12 hours ago by genomax85k
0
votes
1
answer
64
views
1
answers
Comment: C: NCBI wants to remove quality scores from SRA
... From blog link: > Using 2 quality bins (i.e. good/bad) gives a dramatic improvement over > no-quality, though the result is not as good as 8-binning. 2 quality bins is closest to the proposal of NCBI that is keeping only 1 bin. ...
written 12 hours ago by genomax85k
1
vote
0
answers
109
views
0
answers
Comment: C: QC prior to bacterial genome assembly
... The images still appear to be broken. Please post correct links. ...
written 13 hours ago by genomax85k
1
vote
1
answer
64
views
1
answers
Answer: A: NCBI wants to remove quality scores from SRA
... I am going to take the liberty of posting a section from [NCBI proposal][1] below that describes the actual process of quality conversion so people can read it right here. While this may appear like a drastic change, Illumina has been doing something similar for a while by producing [binned Q-scor ...
written 13 hours ago by genomax85k
2
votes
1
answer
33
views
1
answers
Answer: C: What is the story behind chrEBV?
... This is something you could have easily found by doing a simple search. Here is the [first result][1]. From [GATK][2]: > The GRCh38 analysis sets also include a contig to siphon off reads > corresponding to the Epstein-Barr virus sequence as well as decoy > contigs. The EBV contig can hel ...
written 15 hours ago by genomax85k
1
vote
0
answers
109
views
0
answers
Comment: C: QC prior to bacterial genome assembly
... > 1- So, how can I improve these results using galaxy tools, in which I > can move to the assembly step I don't know if you can provide custom sequences to trimmomatic via galaxy interface. But that would be the way to go to tackle. >Nextra Transposase sequences I suggest that you use ...
written 15 hours ago by genomax85k
0
votes
0
answers
42
views
0
answers
Comment: C: In search of Mouse limb cell type markers database
... https://panglaodb.se/markers.html ...
written 1 day ago by genomax85k
0
votes
0
answers
38
views
0
answers
Comment: C: HOMER load genomes not working
... Did you properly install the package following directions? Looks like there are more than one `.pl` scripts and they need to be available in your `$PATH`. You could find the directory that contains those scripts and then add it to your `$PATH` by doing `export PATH=$PATH:/dir_w_perl_scripts` and the ...
written 1 day ago by genomax85k

Latest awards to genomax

Scholar 7 hours ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Teacher 6 days ago, created an answer with at least 3 up-votes. For A: Is there a tool to find the correct percentage of duplication levels in FastQ ?
Scholar 6 days ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Scholar 8 days ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Teacher 9 days ago, created an answer with at least 3 up-votes. For A: Is there a tool to find the correct percentage of duplication levels in FastQ ?
Teacher 10 days ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Scholar 11 days ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Scholar 14 days ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Teacher 15 days ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Scholar 16 days ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Scholar 17 days ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Scholar 18 days ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Commentator 19 days ago, created a comment with at least 3 up-votes. For C: Google genomics cloud platform ?
Teacher 22 days ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Teacher 22 days ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Commentator 24 days ago, created a comment with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Scholar 4 weeks ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Scholar 5 weeks ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Scholar 5 weeks ago, created an answer that has been accepted. For C: Choose version of software (e.g. minimap2) in Linux
Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Corona Virus- Sequence alignment-Phylogeny analysis
Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: Who are the Greatest Bioinformaticians Of All Time (GBOAT)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 796 users visited in the last hour