Moderator: genomax
genomax ♦ 71k
- Reputation:
- 71,320
- Status:
- Trusted
- Location:
- United States
- Last seen:
- 5 hours ago
- Joined:
- 4 years, 3 months ago
- Email:
- g*******@gmail.com
Posts by genomax
<prev
• 12,757 results •
page 1 of 1276 •
next >
0
votes
2
answers
96
views
2
answers
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work.
![Upvote|Bookmark|Accept][1]
[1]: https://image.ibb.co/dfsqrx/upvote_accept_bookmark.png ...
written 5 hours ago by
genomax ♦ 71k
1
vote
0
answers
115
views
0
answers
... Please do not delete posts that have received comments. ...
written 12 hours ago by
genomax ♦ 71k
1
vote
3
answers
100
views
3
answers
... A reference may not always be available.
Would that `awk` solution scale well if one has millions of reads? This is where `clumpify` comes in handy. ...
written 13 hours ago by
genomax ♦ 71k
1
vote
1
answer
41
views
1
answers
Answer:
C: Annotation of SNP ID
... Have you tried to search this forum with those terms? You will quickly end up with `snpEff` for one. ...
written 14 hours ago by
genomax ♦ 71k
0
votes
3
answers
100
views
3
answers
... Use `clumpify.sh` from BBMap suite. You can use fastq data as is. I suggest you do no other manipulations. See: https://www.biostars.org/p/225338/#230178
You can choose to allow one or more errors. Separate PCR/optical duplicates. ...
written 17 hours ago by
genomax ♦ 71k
0
votes
3
answers
126
views
3
answers
... https://www.biostars.org/u/4136/ : It is fair that you acknowledge their help by at least upvoting this answer. ...
written 1 day ago by
genomax ♦ 71k
0
votes
2
answers
108
views
2
answers
... Please use `ADD COMMENT/ADD REPLY` when responding to existing posts to keep threads logically organized. ...
written 1 day ago by
genomax ♦ 71k
2
votes
0
answers
93
views
0
answers
... I think you are asking if this can be done via `R`. Perhaps someone else would suggest an appropriate package.
You could also do this by [programmatically accessing][1] UniProt's site.
[1]: https://www.uniprot.org/help/api_idmapping ...
written 1 day ago by
genomax ♦ 71k
1
vote
0
answers
93
views
0
answers
... > O08537 Esr2
That is a [mouse protein][1].
> A7MBE0 SLC22A1
This is a [cow protein][2].
You are using human database/library in your R code above. So it predictably is not able to find these ID's.
[1]: https://www.uniprot.org/uniprot/O08537
[2]: https://www.uniprot.org/uniprot/A7 ...
written 1 day ago by
genomax ♦ 71k
1
vote
2
answers
141
views
2
answers
... Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time.
Thank you! ...
written 1 day ago by
genomax ♦ 71k
Latest awards to genomax
Teacher
2 days ago,
created an answer with at least 3 up-votes.
For C: Doing differential gene expression without knowing sample classes
Teacher
19 days ago,
created an answer with at least 3 up-votes.
For C: Doing differential gene expression without knowing sample classes
Scholar
19 days ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Teacher
20 days ago,
created an answer with at least 3 up-votes.
For C: Doing differential gene expression without knowing sample classes
Teacher
22 days ago,
created an answer with at least 3 up-votes.
For C: Doing differential gene expression without knowing sample classes
Scholar
22 days ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Commentator
4 weeks ago,
created a comment with at least 3 up-votes.
For C: Tutorial RNASEQ problem again!
Teacher
5 weeks ago,
created an answer with at least 3 up-votes.
For C: Doing differential gene expression without knowing sample classes
Scholar
5 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Appreciated
5 weeks ago,
created a post with more than 5 votes.
For Inviting NEW Biostars moderators to join Biostars slack channel
Scholar
5 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Scholar
7 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Teacher
8 weeks ago,
created an answer with at least 3 up-votes.
For C: Doing differential gene expression without knowing sample classes
Teacher
9 weeks ago,
created an answer with at least 3 up-votes.
For C: pulling out a single pseudochromosome from my vcf file
Scholar
9 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Teacher
9 weeks ago,
created an answer with at least 3 up-votes.
For C: pulling out a single pseudochromosome from my vcf file
Commentator
9 weeks ago,
created a comment with at least 3 up-votes.
For C: Google genomics cloud platform ?
Scholar
10 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Teacher
10 weeks ago,
created an answer with at least 3 up-votes.
For C: pulling out a single pseudochromosome from my vcf file
Scholar
10 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Scholar
10 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Appreciated
10 weeks ago,
created a post with more than 5 votes.
For Inviting NEW Biostars moderators to join Biostars slack channel
Teacher
10 weeks ago,
created an answer with at least 3 up-votes.
For C: pulling out a single pseudochromosome from my vcf file
Scholar
10 weeks ago,
created an answer that has been accepted.
For A: Ensembl gene annotation GRCh37.87
Teacher
11 weeks ago,
created an answer with at least 3 up-votes.
For C: pulling out a single pseudochromosome from my vcf file
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1754 users visited in the last hour