Moderator: genomax

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genomax71k
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Posts by genomax

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Comment: C: length of specific sequences from multi fasta file
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work. ![Upvote|Bookmark|Accept][1] [1]: https://image.ibb.co/dfsqrx/upvote_accept_bookmark.png ...
written 5 hours ago by genomax71k
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Comment: C: How to add significant cut off in manhattan plot
... Please do not delete posts that have received comments. ...
written 12 hours ago by genomax71k
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Comment: C: removing duplicate sequences while extarcting the reads from fastq.gz
... A reference may not always be available. Would that `awk` solution scale well if one has millions of reads? This is where `clumpify` comes in handy. ...
written 13 hours ago by genomax71k
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Answer: C: Annotation of SNP ID
... Have you tried to search this forum with those terms? You will quickly end up with `snpEff` for one. ...
written 14 hours ago by genomax71k
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Answer: A: removing duplicate sequences while extarcting the reads from fastq.gz
... Use `clumpify.sh` from BBMap suite. You can use fastq data as is. I suggest you do no other manipulations. See: https://www.biostars.org/p/225338/#230178 You can choose to allow one or more errors. Separate PCR/optical duplicates. ...
written 17 hours ago by genomax71k
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Comment: C: How can I add Sample Identifier to paired fastq file names
... https://www.biostars.org/u/4136/ : It is fair that you acknowledge their help by at least upvoting this answer. ...
written 1 day ago by genomax71k
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Comment: C: Pull number of cells in cluster from seurat object
... Please use `ADD COMMENT/ADD REPLY` when responding to existing posts to keep threads logically organized. ...
written 1 day ago by genomax71k
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Comment: C: Convertion from Uniprot ID to Gene Symbol does not work well.
... I think you are asking if this can be done via `R`. Perhaps someone else would suggest an appropriate package. You could also do this by [programmatically accessing][1] UniProt's site. [1]: https://www.uniprot.org/help/api_idmapping ...
written 1 day ago by genomax71k
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Comment: C: Convertion from Uniprot ID to Gene Symbol does not work well.
... > O08537 Esr2 That is a [mouse protein][1]. > A7MBE0 SLC22A1 This is a [cow protein][2]. You are using human database/library in your R code above. So it predictably is not able to find these ID's. [1]: https://www.uniprot.org/uniprot/O08537 [2]: https://www.uniprot.org/uniprot/A7 ...
written 1 day ago by genomax71k
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Comment: C: is 0-based start and 1-based end of bed format not compatible with htseq-count?
... Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. Thank you! ...
written 1 day ago by genomax71k

Latest awards to genomax

Teacher 2 days ago, created an answer with at least 3 up-votes. For C: Doing differential gene expression without knowing sample classes
Teacher 19 days ago, created an answer with at least 3 up-votes. For C: Doing differential gene expression without knowing sample classes
Scholar 19 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 20 days ago, created an answer with at least 3 up-votes. For C: Doing differential gene expression without knowing sample classes
Teacher 22 days ago, created an answer with at least 3 up-votes. For C: Doing differential gene expression without knowing sample classes
Scholar 22 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: Tutorial RNASEQ problem again!
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Doing differential gene expression without knowing sample classes
Scholar 5 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Appreciated 5 weeks ago, created a post with more than 5 votes. For Inviting NEW Biostars moderators to join Biostars slack channel
Scholar 5 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Scholar 7 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For C: Doing differential gene expression without knowing sample classes
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Scholar 9 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Google genomics cloud platform ?
Scholar 10 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Scholar 10 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Scholar 10 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Appreciated 10 weeks ago, created a post with more than 5 votes. For Inviting NEW Biostars moderators to join Biostars slack channel
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Scholar 10 weeks ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file

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