Moderator: Malachi Griffith

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15,200
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Location:
Washington University School of Medicine, St. Louis, USA
Website:
http://www.malachigrif...
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Google Scholar Page
Last seen:
1 month, 1 week ago
Joined:
5 years, 8 months ago
Email:
m*******@genome.wustl.edu

I am an Assistant Director of the Genome Institute, and Assistant Professor of Genetics at Washington University School of Medicine. I am conducting research in medical genomics and bioinformatics specializing in the application of molecular biology, informatics, and statistics to the study of cancer.

Posts by Malachi Griffith

<prev • 469 results • page 1 of 47 • next >
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Comment: C: Exploring cancer mutation data portals
... You are most welcome. I just updated this post to include the Genomic Data Commons. This is a great resource for accessing the raw data, variant call files, etc. ...
written 7 weeks ago by Malachi Griffith15k
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Comment: C: Database Of Tumor Suppressors And/Or Oncogenes
... The 404 points you at this old paper version: http://nar.oxfordjournals.org/content/35/suppl_1/D721.full ...
written 6 months ago by Malachi Griffith15k
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Comment: C: What are the resources to design the most comprehensive clinical SNP chip?
... The bioRXiv for the [CIViC][1] paper lists several other useful resources that you may find helpful (mostly cancer focused): http://biorxiv.org/content/early/2016/09/01/072892 [1]: https://civic.genome.wustl.edu/#/home ...
written 9 months ago by Malachi Griffith15k
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Comment: C: Best way to obtain list of all drug-variant associations from CIViC
... Please note that both the [Data Releases section][1] and [API documentation][2] of [www.civicdb.org][3] have been substantially updated! Please let us know if you have any issues. [1]: https://civic.genome.wustl.edu/#/releases [2]: https://genome.github.io/civic-api-docs/ [3]: https://civic. ...
written 9 months ago by Malachi Griffith15k • updated 9 months ago by Obi Griffith15k
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Comment: C: CIViC - Clinical Interpretation of Variants in Cancer
... Update on licensing. The code is still licensed with MIT, but the content is now under the Creative Commons Public Domain Designation (CC0). ...
written 9 months ago by Malachi Griffith15k
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Comment: C: How To Get Phasing Status From Vcf Files
... I found this description to be the most helpful for understanding how phasing information is represented in a VCF file: http://gatkforums.broadinstitute.org/gatk/discussion/45/purpose-and-operation-of-read-backed-phasing It has nice intuitive examples of what the file actually looks like for phased ...
written 10 months ago by Malachi Griffith15k
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Answer: A: PubChem CID data retrieval
... This question could use some clarification as it is not clear what you are trying to achieve. There will not be anything like a 1-to-1 relationship between pubchem CIDs (which refer to *chemical compounds*) and Uniprot IDs (which refer to protein structures). Are you interested in interactions b ...
written 12 months ago by Malachi Griffith15k
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Comment: C: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... A new post for the updated 2016 series is now available here: https://www.biostars.org/p/191658/. ...
written 13 months ago by Malachi Griffith15k
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Comment: C: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... A new post for the updated 2016 series is now available here: https://www.biostars.org/p/191658/. ...
written 13 months ago by Malachi Griffith15k
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Comment: C: Current Topics in Genome Analysis 2016 (collection of educational lectures)
... This is an update for the 2016 version of this very popular lecture series. The old post is here: https://www.biostars.org/p/103074/. That post also includes links back to archived versions of this lecture series. It has now been going on for 14 years. ...
written 13 months ago by Malachi Griffith15k

Latest awards to Malachi Griffith

Appreciated 3 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 4 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 5 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 5 months ago, created a question with more than 5,000 views. For List Of Genome Sequencing Centers/Institutes
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Popular Question 5 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Good Answer 6 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
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Appreciated 8 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 8 months ago, created a question with more than 5,000 views. For List Of Genome Sequencing Centers/Institutes
Appreciated 8 months ago, created a post with more than 5 votes. For A: Technical Or Biological Replicate
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 9 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Gold Standard 10 months ago, created a post with more than 25 bookmarks. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Good Answer 10 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Popular Question 10 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Popular Question 10 months ago, created a question with more than 1,000 views. For List Of Genome Sequencing Centers/Institutes
Popular Question 11 months ago, created a question with more than 1,000 views. For Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?

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