Moderator: Malachi Griffith

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Location:
Washington University School of Medicine, St. Louis, USA
Website:
http://www.malachigrif...
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Google Scholar Page
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an hour ago
Joined:
5 years, 2 months ago
Email:
m*******@genome.wustl.edu

I am an Assistant Director of the Genome Institute, and Assistant Professor of Genetics at Washington University School of Medicine. I am conducting research in medical genomics and bioinformatics specializing in the application of molecular biology, informatics, and statistics to the study of cancer.

Posts by Malachi Griffith

<prev • 468 results • page 1 of 47 • next >
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Comment: C: Database Of Tumor Suppressors And/Or Oncogenes
... The 404 points you at this old paper version: http://nar.oxfordjournals.org/content/35/suppl_1/D721.full ...
written 29 days ago by Malachi Griffith14k
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Comment: C: What are the resources to design the most comprehensive clinical SNP chip?
... The bioRXiv for the [CIViC][1] paper lists several other useful resources that you may find helpful (mostly cancer focused): http://biorxiv.org/content/early/2016/09/01/072892 [1]: https://civic.genome.wustl.edu/#/home ...
written 4 months ago by Malachi Griffith14k
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Comment: C: Best way to obtain list of all drug-variant associations from CIViC
... Please note that both the [Data Releases section][1] and [API documentation][2] of [www.civicdb.org][3] have been substantially updated! Please let us know if you have any issues. [1]: https://civic.genome.wustl.edu/#/releases [2]: https://genome.github.io/civic-api-docs/ [3]: https://civic. ...
written 4 months ago by Malachi Griffith14k • updated 4 months ago by Obi Griffith14k
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Comment: C: CIViC - Clinical Interpretation of Variants in Cancer
... Update on licensing. The code is still licensed with MIT, but the content is now under the Creative Commons Public Domain Designation (CC0). ...
written 4 months ago by Malachi Griffith14k
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Comment: C: How To Get Phasing Status From Vcf Files
... I found this description to be the most helpful for understanding how phasing information is represented in a VCF file: http://gatkforums.broadinstitute.org/gatk/discussion/45/purpose-and-operation-of-read-backed-phasing It has nice intuitive examples of what the file actually looks like for phased ...
written 5 months ago by Malachi Griffith14k
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Answer: A: PubChem CID data retrieval
... This question could use some clarification as it is not clear what you are trying to achieve. There will not be anything like a 1-to-1 relationship between pubchem CIDs (which refer to *chemical compounds*) and Uniprot IDs (which refer to protein structures). Are you interested in interactions b ...
written 7 months ago by Malachi Griffith14k
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Comment: C: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... A new post for the updated 2016 series is now available here: https://www.biostars.org/p/191658/. ...
written 8 months ago by Malachi Griffith14k
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Comment: C: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... A new post for the updated 2016 series is now available here: https://www.biostars.org/p/191658/. ...
written 8 months ago by Malachi Griffith14k
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Comment: C: Current Topics in Genome Analysis 2016 (collection of educational lectures)
... This is an update for the 2016 version of this very popular lecture series. The old post is here: https://www.biostars.org/p/103074/. That post also includes links back to archived versions of this lecture series. It has now been going on for 14 years. ...
written 8 months ago by Malachi Griffith14k
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Tutorial: Current Topics in Genome Analysis 2016 (collection of educational lectures)
... Current Topics in Genome Analysis 2016 A lecture series covering contemporary areas in genomics and bioinformatics February 17 - May 25, 2016 Given the rapid advances in genomics and bioinformatics that have taken place in the past few years, an intensive review of the major areas of ongoing geno ...
lectures tutorial training genomics workshop written 8 months ago by Malachi Griffith14k

Latest awards to Malachi Griffith

Great Question 7 days ago, created a question with more than 5,000 views. For List Of Genome Sequencing Centers/Institutes
Popular Question 14 days ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Good Answer 14 days ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Commentator 21 days ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Good Answer 7 weeks ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Gold Standard 7 weeks ago, created a post with more than 25 bookmarks. For A: Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
Great Question 3 months ago, created a question with more than 5,000 views. For List Of Genome Sequencing Centers/Institutes
Appreciated 3 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Appreciated 3 months ago, created a post with more than 5 votes. For A: Technical Or Biological Replicate
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 4 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Gold Standard 5 months ago, created a post with more than 25 bookmarks. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Popular Question 5 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Popular Question 5 months ago, created a question with more than 1,000 views. For List Of Genome Sequencing Centers/Institutes
Popular Question 6 months ago, created a question with more than 1,000 views. For Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Epic Question 6 months ago, created a question with more than 10,000 views. For List Of Genome Sequencing Centers/Institutes
Scholar 6 months ago, created an answer that has been accepted. For A: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein
Gold Standard 7 months ago, created a post with more than 25 bookmarks. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Popular Question 7 months ago, created a question with more than 1,000 views. For Associate Director Of Ngs Bioinformatics At Compendia Bioscience, Ann Arbor Mi
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data

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