Moderator: Malachi Griffith

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Location:
Washington University School of Medicine, St. Louis, USA
Website:
http://www.malachigrif...
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Google Scholar Page
Last seen:
2 weeks ago
Joined:
9 years ago
Email:
m*******@genome.wustl.edu

I am an Assistant Director of the Genome Institute, and Assistant Professor of Genetics at Washington University School of Medicine. I am conducting research in medical genomics and bioinformatics specializing in the application of molecular biology, informatics, and statistics to the study of cancer.

Posts by Malachi Griffith

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Comment: C: Resource for cancer cell line tumorigenicity in mice?
... This resources might be helpful: "PDX FINDER IS YOUR OPEN GLOBAL CANCER RESEARCH PORTAL TO PATIENT DERIVED XENOGRAFT MODELS" ...
written 12 months ago by Malachi Griffith18k
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Tutorial: Resources / databases for clinical interpretation of cancer variants
... BioStars already has some nice posts on data portals for [exploring mutation observations][1] (e.g. GDC, ICGC), [databases of tumor suppressors and oncogenes][2], and [drug-gene interactions][3]. However, these don't quite cover another category of very useful resources for interpreting variants in ...
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Job: Cancer Genomics and Bioinformatics positions at WashU (Griffith Lab)
... We are looking to fill some bioinformatics staff positions. Join a fantastic team (~20 bioinformaticians) working on exciting areas of cancer, genomics, immunotherapy, precision medicine. Our lab is located within the McDonnell Genome Institute at Washington University School of Medicine. We hav ...
immunogenomics bioinformatics job cancer written 22 months ago by Malachi Griffith18k • updated 22 months ago by Chris Miller21k
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News: Workshop for genomic data visualization and interpretation
... We will be delivering a workshop on **advanced R and bioinformatics applications for visualization and interpretation of genomic data**. While the course has advanced modules, we try to start from basic principles and build from there. Many of the genomic data interpretation and visualization prin ...
R news ggplot2 rna-seq genomics written 22 months ago by Malachi Griffith18k
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Comment: C: Comprehensive & integrated drug/target database?
... This post discusses these databases extensively: https://www.biostars.org/p/17392/#17396 ...
written 2.6 years ago by Malachi Griffith18k
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Comment: C: Exploring cancer mutation data portals
... Other options that are in the vein of DoCM: [Cancer Hotspots][1] Other options that are in the vein of CIViC: Jackson Lab's [JAX CKB][2] MSKCC's [ONCOKB][3] Cornell's [PMKB][4] IRB's [CGI][5] If you would like learn more about efforts to harmonize the efforts of the cancer variant interpretation r ...
written 2.8 years ago by Malachi Griffith18k
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Comment: C: Exploring cancer mutation data portals
... The reason these portals exist is that in part it is still an open research question which mutations are definitively drivers versus passengers. That being said, for your needs you might want to approach this problem from the perspective of more established tumor suppressors and oncogenes. Here is ...
written 2.8 years ago by Malachi Griffith18k
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Comment: C: Liftover Of Na12878 Coordinates Into Hg19 Coordinates
... Detailed post on tools for converting genome coordinates between builds: https://www.biostars.org/p/65558/ ...
written 3.2 years ago by Malachi Griffith18k
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Comment: C: Updating dbSNP rs ids from old SNP data
... Detailed post on tools for converting coordinates between genome builds: https://www.biostars.org/p/65558/ ...
written 3.2 years ago by Malachi Griffith18k
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Comment: C: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover,
... I have updated the example, but it should be noted that the majority of these tools generically support all major builds for multiple species (not just human). When a new build comes out, the "chain" files that explain how to convert to/from that build are usually released soon after. ...
written 3.2 years ago by Malachi Griffith18k

Latest awards to Malachi Griffith

Teacher 20 days ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Gold Standard 20 days ago, created a post with more than 25 bookmarks. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 20 days ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Epic Question 9 months ago, created a question with more than 10,000 views. For List Of Genome Sequencing Centers/Institutes
Epic Question 9 months ago, created a question with more than 10,000 views. For Exploring cancer mutation data portals
Appreciated 9 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Scholar 12 months ago, created an answer that has been accepted. For A: Where can I get the genelist in Oncoscan?
Scholar 12 months ago, created an answer that has been accepted. For A: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein
Appreciated 12 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Commentator 19 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Prophet 19 months ago, created a post with more than 20 followers. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 19 months ago, created a post with more than 5 votes. For A: Technical Or Biological Replicate
Appreciated 19 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Epic Question 22 months ago, created a question with more than 10,000 views. For List Of Genome Sequencing Centers/Institutes
Appreciated 22 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 24 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 24 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Scholar 2.3 years ago, created an answer that has been accepted. For A: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein
Good Answer 2.3 years ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 2.6 years ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)

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