Moderator: Malachi Griffith

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18,220
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Location:
Washington University School of Medicine, St. Louis, USA
Website:
http://www.malachigrif...
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Google Scholar Page
Last seen:
2 weeks, 6 days ago
Joined:
9 years, 3 months ago
Email:
m*******@genome.wustl.edu

I am an Assistant Director of the Genome Institute, and Assistant Professor of Genetics at Washington University School of Medicine. I am conducting research in medical genomics and bioinformatics specializing in the application of molecular biology, informatics, and statistics to the study of cancer.

Posts by Malachi Griffith

<prev • 484 results • page 1 of 49 • next >
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Comment: C: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
... This resource is still actively maintained but it has now been moved to: https://rnabio.org/ ...
written 9 weeks ago by Malachi Griffith18k
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Comment: C: Resource for cancer cell line tumorigenicity in mice?
... This resources might be helpful: "PDX FINDER IS YOUR OPEN GLOBAL CANCER RESEARCH PORTAL TO PATIENT DERIVED XENOGRAFT MODELS" ...
written 15 months ago by Malachi Griffith18k
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Tutorial: Resources / databases for clinical interpretation of cancer variants
... BioStars already has some nice posts on data portals for [exploring mutation observations][1] (e.g. GDC, ICGC), [databases of tumor suppressors and oncogenes][2], and [drug-gene interactions][3]. However, these don't quite cover another category of very useful resources for interpreting variants in ...
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Job: Cancer Genomics and Bioinformatics positions at WashU (Griffith Lab)
... We are looking to fill some bioinformatics staff positions. Join a fantastic team (~20 bioinformaticians) working on exciting areas of cancer, genomics, immunotherapy, precision medicine. Our lab is located within the McDonnell Genome Institute at Washington University School of Medicine. We hav ...
immunogenomics bioinformatics job cancer written 2.1 years ago by Malachi Griffith18k • updated 2.1 years ago by Chris Miller21k
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News: Workshop for genomic data visualization and interpretation
... We will be delivering a workshop on **advanced R and bioinformatics applications for visualization and interpretation of genomic data**. While the course has advanced modules, we try to start from basic principles and build from there. Many of the genomic data interpretation and visualization prin ...
R news ggplot2 rna-seq genomics written 2.1 years ago by Malachi Griffith18k
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Comment: C: Comprehensive & integrated drug/target database?
... This post discusses these databases extensively: https://www.biostars.org/p/17392/#17396 ...
written 2.9 years ago by Malachi Griffith18k
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Comment: C: Exploring cancer mutation data portals
... Other options that are in the vein of DoCM: [Cancer Hotspots][1] Other options that are in the vein of CIViC: Jackson Lab's [JAX CKB][2] MSKCC's [ONCOKB][3] Cornell's [PMKB][4] IRB's [CGI][5] If you would like learn more about efforts to harmonize the efforts of the cancer variant interpretation r ...
written 3.0 years ago by Malachi Griffith18k
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Comment: C: Exploring cancer mutation data portals
... The reason these portals exist is that in part it is still an open research question which mutations are definitively drivers versus passengers. That being said, for your needs you might want to approach this problem from the perspective of more established tumor suppressors and oncogenes. Here is ...
written 3.0 years ago by Malachi Griffith18k
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Comment: C: Liftover Of Na12878 Coordinates Into Hg19 Coordinates
... Detailed post on tools for converting genome coordinates between builds: https://www.biostars.org/p/65558/ ...
written 3.4 years ago by Malachi Griffith18k
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Comment: C: Updating dbSNP rs ids from old SNP data
... Detailed post on tools for converting coordinates between genome builds: https://www.biostars.org/p/65558/ ...
written 3.4 years ago by Malachi Griffith18k

Latest awards to Malachi Griffith

Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 3 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Gold Standard 3 months ago, created a post with more than 25 bookmarks. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 3 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 5 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Epic Question 12 months ago, created a question with more than 10,000 views. For List Of Genome Sequencing Centers/Institutes
Epic Question 12 months ago, created a question with more than 10,000 views. For Exploring cancer mutation data portals
Appreciated 12 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Scholar 15 months ago, created an answer that has been accepted. For A: Where can I get the genelist in Oncoscan?
Scholar 15 months ago, created an answer that has been accepted. For A: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein
Appreciated 15 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Commentator 22 months ago, created a comment with at least 3 up-votes. For C: Ways To Filter Noise From Rnaseq Data
Prophet 22 months ago, created a post with more than 20 followers. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 22 months ago, created a post with more than 5 votes. For A: Technical Or Biological Replicate
Appreciated 22 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Epic Question 2.1 years ago, created a question with more than 10,000 views. For List Of Genome Sequencing Centers/Institutes
Appreciated 2.1 years ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 2.2 years ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 2.2 years ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Scholar 2.6 years ago, created an answer that has been accepted. For A: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein

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