Moderator: Malachi Griffith

Reputation:
16,550
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Trusted
Location:
Washington University School of Medicine, St. Louis, USA
Website:
http://www.malachigrif...
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Google Scholar Page
Last seen:
1 month ago
Joined:
7 years, 1 month ago
Email:
m*******@genome.wustl.edu

I am an Assistant Director of the Genome Institute, and Assistant Professor of Genetics at Washington University School of Medicine. I am conducting research in medical genomics and bioinformatics specializing in the application of molecular biology, informatics, and statistics to the study of cancer.

Posts by Malachi Griffith

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Comment: C: Comprehensive & integrated drug/target database?
... This post discusses these databases extensively: https://www.biostars.org/p/17392/#17396 ...
written 9 months ago by Malachi Griffith17k
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Comment: C: Exploring cancer mutation data portals
... Other options that are in the vein of DoCM: [Cancer Hotspots][1] Other options that are in the vein of CIViC: Jackson Lab's [JAX CKB][2] MSKCC's [ONCOKB][3] Cornell's [PMKB][4] IRB's [CGI][5] If you would like learn more about efforts to harmonize the efforts of the cancer variant interpretation r ...
written 10 months ago by Malachi Griffith17k
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Comment: C: Exploring cancer mutation data portals
... The reason these portals exist is that in part it is still an open research question which mutations are definitively drivers versus passengers. That being said, for your needs you might want to approach this problem from the perspective of more established tumor suppressors and oncogenes. Here is ...
written 11 months ago by Malachi Griffith17k
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Comment: C: Liftover Of Na12878 Coordinates Into Hg19 Coordinates
... Detailed post on tools for converting genome coordinates between builds: https://www.biostars.org/p/65558/ ...
written 15 months ago by Malachi Griffith17k
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Comment: C: Updating dbSNP rs ids from old SNP data
... Detailed post on tools for converting coordinates between genome builds: https://www.biostars.org/p/65558/ ...
written 15 months ago by Malachi Griffith17k
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Comment: C: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover,
... I have updated the example, but it should be noted that the majority of these tools generically support all major builds for multiple species (not just human). When a new build comes out, the "chain" files that explain how to convert to/from that build are usually released soon after. ...
written 15 months ago by Malachi Griffith17k
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Comment: C: Conversion Between Hg18 And Hg19
... This post describes various tools for coordinate conversions: https://www.biostars.org/p/65558/ ...
written 15 months ago by Malachi Griffith17k
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Comment: C: How Do You Manage Moving Existing Projects To A New Genome Build?
... This post details various options for coordinate conversions between builds: https://www.biostars.org/p/65558/ ...
written 15 months ago by Malachi Griffith17k
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Comment: C: Visualizing genomic data: techniques and challenges. Our interview with Dr. Mala
... Cross-link to the post with more details on the content of this course: https://www.biostars.org/p/240625/ ...
written 16 months ago by Malachi Griffith17k
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Comment: C: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
... Cross linking to the interview post related to this course for convenience: https://www.biostars.org/p/259960/ ...
written 16 months ago by Malachi Griffith17k

Latest awards to Malachi Griffith

Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Scholar 5 months ago, created an answer that has been accepted. For A: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Appreciated 5 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 9 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 9 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
Good Answer 9 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Appreciated 9 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Appreciated 10 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 10 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Popular Question 11 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
Gold Standard 13 months ago, created a post with more than 25 bookmarks. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Great Question 15 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 16 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Appreciated 16 months ago, created a post with more than 5 votes. For A: Technical Or Biological Replicate
Appreciated 19 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 19 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Good Answer 19 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Popular Question 19 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
Appreciated 21 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 22 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 23 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?

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