User: vinayjrao

gravatar for vinayjrao
vinayjrao80
Reputation:
80
Status:
Trusted
Location:
Last seen:
2 hours ago
Joined:
8 months, 4 weeks ago
Email:
v********@gmail.com

Posts by vinayjrao

<prev • 59 results • page 1 of 6 • next >
0
votes
1
answer
48
views
1
answers
Comment: C: Error in writing a file from R
... That solved the problem. Could you please explain to me what the error was? ...
written 2 hours ago by vinayjrao80
2
votes
1
answer
48
views
1
answer
Error in writing a file from R
... Hello, I have a list in R, which I need to write into a file. When I try running `write.table(data, file="molecules.txt")`, I get the following error - Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : arguments imply differing number of rows: 1, 5, 5 ...
R write.table written 2 hours ago by vinayjrao80 • updated 2 hours ago by GenoMax42k
0
votes
2
answers
105
views
2
answers
Comment: C: removing lines that don't match by grep
... I tried this solution too, but I did not get the desired result. It gave me lesser number of genes as compared to the awk output. How exactly does it work? ...
written 2 days ago by vinayjrao80
6
votes
2
answers
105
views
2
answers
removing lines that don't match by grep
... Hello, I have a file containing gene names of interest (24423 genes), and another file containing the lengths to all the genes (41306 genes). I want the lengths only to the 24424 genes, but when I `grep` using `grep -wf file1 file2` or even `fgrep -Fwf file1 file2`, I get some excess genes, because ...
grep file handling written 2 days ago by vinayjrao80 • updated 2 days ago by michael.ante2.2k
0
votes
0
answers
471
views
0
answers
Comment: C: Getting multiple *.sra files from NCBI using a list
... If the SRX files are in order, you could print all the wget commands through a loop and run them in the terminal ...
written 6 weeks ago by vinayjrao80
0
votes
0
answers
148
views
0
answers
Comment: C: Error in file(file, "rt") : invalid 'description' argument
... Dear Amy, I don't have a lot of experience with ballgown, but I think you need to run the script from the parent directory "/fast/users/a123456", while your data files must be in prrdata. ...
written 6 weeks ago by vinayjrao80
5
votes
1
answer
298
views
1
answer
Setting the first row as column name in R
... Hello, I have a file - > GeneID sample1 sample2 sample3 sample4 gene_length > gene1   count1     count2   count3    count4    length1 > gene2   count1     count2   count3    count4    length2 > gene3   count1   ...
R written 7 weeks ago by vinayjrao80 • updated 7 weeks ago by Satyajeet Khare1.2k
0
votes
2
answers
219
views
2
answers
Comment: C: extracting a column by grepping particular rows
... Dear Suraj, Thanks for the suggestion, but could you please explain what the command does, because `wc -l` gave me 36184, while `wc -l file_a` gives 24424. ...
written 8 weeks ago by vinayjrao80
0
votes
2
answers
219
views
2
answers
Comment: C: extracting a column by grepping particular rows
... Dear Charles, Thanks for your answer. My data is tab-separated, but I shall try the suggestion and update you. -edit- I tried the suggestion, but `wc -l file_a` gives 24424, while `wc -l` of the output gives 23133 lines. file_b was downloaded from ucsc (known_gene, latest version). Could there b ...
written 8 weeks ago by vinayjrao80
1
vote
2
answers
219
views
2
answers
extracting a column by grepping particular rows
... Hi, I have two files - file_a >gene_name sample_1 sample_2 sample_3 >gene_1 count_1count_1 count_1 >gene_2 count_2 count_2 count_2 >gene_5 count_3 count_3 count_3 >gene_6 count_4 count_4 count_4 file_b >gene_name start end gene_length >gene_ ...
grep awk written 8 weeks ago by vinayjrao80 • updated 8 weeks ago by cpad01124.1k

Latest awards to vinayjrao

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1684 users visited in the last hour