User: vinayjrao

gravatar for vinayjrao
vinayjrao200
Reputation:
200
Status:
Trusted
Location:
inStem, India
Last seen:
4 days, 3 hours ago
Joined:
3 years, 9 months ago
Email:
v********@gmail.com

Posts by vinayjrao

<prev • 161 results • page 1 of 17 • next >
0
votes
1
answer
68
views
1
answers
Comment: C: Ignore replacing a comma within quotes
... It works exactly as required. Thanks a lot :) Please convert your comment to an answer so that I can accept it. ...
written 7 days ago by vinayjrao200
0
votes
1
answer
68
views
1
answers
Comment: C: Ignore replacing a comma within quotes
... Thanks a lot for the command, but could you please expain it? ...
written 7 days ago by vinayjrao200
0
votes
1
answer
68
views
1
answers
Comment: C: Ignore replacing a comma within quotes
... Hi, The input file has over 700 lines, so I am just putting up the header followed by 2 lines - >Name,Age,"City, Country",Profession >Mitch,27,"Melbourne,Australia",Student >John,31,"Boston,USA",Chef The expected output is - >Name       Age     "City,Country"      Profession >M ...
written 7 days ago by vinayjrao200
0
votes
1
answer
68
views
1
answers
Comment: C: Ignore replacing a comma within quotes
... Hi, Thanks for your response, but I feel my question was not clear enough. When the raw file (.csv) is used, I want to replace all commas (except for the ones in quotes) by tab. In the last part, I mentioned that I converted the csv file entirely to a tab-delimited file, and then tried to convert ...
written 7 days ago by vinayjrao200
2
votes
1
answer
68
views
1
answer
Ignore replacing a comma within quotes
... Hi, I have a file with the following format - >Name,Age,"City, Country",Profession >Mitch,27,"Melbourne,Australia",Student >John,31,"Boston,USA",Chef I want to make tis a tab separated file, but while ignoring the commas contained within the quotes with the output file looking like - ...
awk sed regex written 7 days ago by vinayjrao200
0
votes
1
answer
150
views
1
answers
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
... Thank you once again. ...
written 6 weeks ago by vinayjrao200
0
votes
1
answer
150
views
1
answers
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
... Thank you very much for your reply however, does this imply that `ApplyBQSR` is an alternate to `PrintReads` with respect to my request, or do I have to still use `PrintReads`? ...
written 6 weeks ago by vinayjrao200
10
votes
1
answer
150
views
5 follow
1
answer
Recalibrating variants in GATK4.1 as compared to GATK3.7
... Hello everyone, I had been using GATK3.7 until last Septemeber to identify variants from human whole exome sequencing samples. However, recently, our institute has upgraded to GATK4.1. In accordance with GATK3.7, our pipeline identified variants from the `bam` file, which was then recalibrated and t ...
gatk snp written 6 weeks ago by vinayjrao200 • updated 6 weeks ago by dare_devil1.4k
0
votes
1
answer
135
views
1
answers
Comment: C: Compare elements between rows and columns
... This works perfectly! I was wondering if I could modify the command in such a way that (added to the question are the last row and column) I separately pick the `Type` of variant without bothering about the `Exon` column. I tried `sort -t $'\t' -k1,1 -k6,6gr inputFile | sort -t $'\t' -uk1,1 --merge ...
written 8 weeks ago by vinayjrao200
2
votes
1
answer
135
views
1
answer
Compare elements between rows and columns
... Hi, I have a file containing a list of mutations of some genes, with the format - >rsID                     Location                              GeneID         Feature                            Exon      >NucleotideSubstitution      AminoAcidSubstitution      cDNA      Type >rs541031 ...
shell rna-seq awk written 8 weeks ago by vinayjrao200

Latest awards to vinayjrao

Great Question 6 weeks ago, created a question with more than 5,000 views. For Ballgown Error in file(file, "rt") : invalid 'description' argument
Epic Question 6 weeks ago, created a question with more than 10,000 views. For Interpreting GSEA enrichment plots/results
Great Question 6 weeks ago, created a question with more than 5,000 views. For Formula to calculate FPKM
Great Question 11 weeks ago, created a question with more than 5,000 views. For Formula to calculate FPKM
Great Question 11 weeks ago, created a question with more than 5,000 views. For Formula to calculate FPKM
Epic Question 3 months ago, created a question with more than 10,000 views. For grep a column based on a string
Popular Question 3 months ago, created a question with more than 1,000 views. For Formula to calculate FPKM
Scholar 3 months ago, created an answer that has been accepted. For C: How to login to dowload datasets from EGA - European Genome-phenome Archive?
Great Question 7 months ago, created a question with more than 5,000 views. For Interpreting GSEA enrichment plots/results
Great Question 10 months ago, created a question with more than 5,000 views. For grep a column based on a string
Epic Question 10 months ago, created a question with more than 10,000 views. For Setting the first row as column name in R
Popular Question 10 months ago, created a question with more than 1,000 views. For how to calculate fpkm?
Popular Question 10 months ago, created a question with more than 1,000 views. For Formula to calculate FPKM
Popular Question 10 months ago, created a question with more than 1,000 views. For BigWig to Wig Conversion
Popular Question 10 months ago, created a question with more than 1,000 views. For Interpreting GSEA enrichment plots/results
Student 16 months ago, asked a question with at least 3 up-votes. For Interpreting GSEA enrichment plots/results
Popular Question 16 months ago, created a question with more than 1,000 views. For No differential gene expression after tuxedo protocol
Popular Question 16 months ago, created a question with more than 1,000 views. For Interpreting GSEA enrichment plots/results
Popular Question 16 months ago, created a question with more than 1,000 views. For Formula to calculate FPKM
Popular Question 20 months ago, created a question with more than 1,000 views. For grep a column based on a string
Great Question 20 months ago, created a question with more than 5,000 views. For grep a column based on a string
Popular Question 21 months ago, created a question with more than 1,000 views. For Formula to calculate FPKM
Popular Question 22 months ago, created a question with more than 1,000 views. For Formula to calculate FPKM
Great Question 22 months ago, created a question with more than 5,000 views. For Setting the first row as column name in R
Popular Question 2.0 years ago, created a question with more than 1,000 views. For how to calculate fpkm?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1148 users visited in the last hour
_