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0
votes
2
replies
228
views
Merging bam files
bam merge rna-seq
updated 3 months ago by ▴ 530 • written 3 months ago by ▴ 210
0
votes
0
replies
227
views
Variants in untargeted genes identified after targeted exome sequencing analysis
snp exome
11 months ago by vinayjrao ▴ 210
0
votes
0
replies
1.1k
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
11 months ago by vinayjrao ▴ 210
0
votes
0
replies
1.1k
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
11 months ago by vinayjrao ▴ 210
2
votes
10
replies
1.1k
views
Unable to overcome troubles in whole exome analysis
exome-seq markduplicates picard
updated 3 months ago by 37k • written 12 months ago by ▴ 210
1
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1
reply
1.1k
views
Answer: Answer: Unable to overcome troubles in whole exome analysis
12 months ago by vinayjrao ▴ 210
0
votes
0
replies
1.1k
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
12 months ago by vinayjrao ▴ 210
0
votes
1
reply
1.1k
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
12 months ago by vinayjrao ▴ 210
0
votes
0
replies
1.1k
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
12 months ago by vinayjrao ▴ 210
0
votes
0
replies
354
views
How to annotate variants against hs37d5?
SNP annotation
17 months ago by vinayjrao ▴ 210
3
votes
7
replies
12k
views
Calculating fpkm from raw counts
RNA-Seq R fpkm
updated 12 months ago by • 0 • written 4.4 years ago by ▴ 210
0
votes
0
replies
605
views
Is it possible to call variants using cram files?
next-gen sequencing SNP
18 months ago by vinayjrao ▴ 210
0
votes
0
replies
622
views
Unable to convert from cram to bam
SNP software error sequencing next-gen
18 months ago by vinayjrao ▴ 210
0
votes
0
replies
3.8k
views
Comment: C: Issue With CRAM -> BAM -> FASTQ Conversion
19 months ago by vinayjrao ▴ 210
0
votes
0
replies
483
views
Comment: C: Ignore replacing a comma within quotes
19 months ago by vinayjrao ▴ 210
0
votes
1
reply
483
views
Comment: C: Ignore replacing a comma within quotes
19 months ago by vinayjrao ▴ 210
0
votes
0
replies
483
views
Comment: C: Ignore replacing a comma within quotes
19 months ago by vinayjrao ▴ 210
0
votes
1
reply
483
views
Comment: C: Ignore replacing a comma within quotes
19 months ago by vinayjrao ▴ 210
2
votes
8
replies
483
views
Ignore replacing a comma within quotes
sed awk regex
19 months ago by vinayjrao ▴ 210
0
votes
0
replies
1.1k
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
20 months ago by vinayjrao ▴ 210
0
votes
1
reply
1.1k
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
20 months ago by vinayjrao ▴ 210
10
votes
4
replies
1.1k
views
Recalibrating variants in GATK4.1 as compared to GATK3.7
SNP GATK
updated 20 months ago by ★ 1.6k • written 20 months ago by ▴ 210
0
votes
1
reply
447
views
Comment: C: Compare elements between rows and columns
21 months ago by vinayjrao ▴ 210
2
votes
3
replies
447
views
Compare elements between rows and columns
awk shell RNA-Seq
updated 4 months ago by 37k • written 21 months ago by ▴ 210
0
votes
1
reply
813
views
Comment: C: Converting CRAM slices to get a CRAM file
21 months ago by vinayjrao ▴ 210
3
votes
4
replies
813
views
Converting CRAM slices to get a CRAM file
samtools
updated 21 months ago by ▴ 890 • written 22 months ago by ▴ 210
0
votes
0
replies
1.6k
views
Comment: C: Create files in multiple directories via for loop
22 months ago by vinayjrao ▴ 210
0
votes
1
reply
1.6k
views
Comment: C: Create files in multiple directories via for loop
22 months ago by vinayjrao ▴ 210
0
votes
1
reply
1.6k
views
Comment: C: Create files in multiple directories via for loop
22 months ago by vinayjrao ▴ 210
0
votes
1
reply
1.6k
views
Comment: C: Create files in multiple directories via for loop
22 months ago by vinayjrao ▴ 210
3
votes
9
replies
1.6k
views
Create files in multiple directories via for loop
shell linux
22 months ago by vinayjrao ▴ 210
0
votes
0
replies
1.3k
views
Comment: C: Converting tsv into bam file
22 months ago by vinayjrao ▴ 210
1
vote
3
replies
1.3k
views
Converting tsv into bam file
genome sequencing R linux
updated 22 months ago by 12k • written 22 months ago by ▴ 210
1
vote
1
reply
984
views
Answer: C: How to login to dowload datasets from EGA - European Genome-phenome Archive?
22 months ago by vinayjrao ▴ 210
3
votes
3
replies
984
views
How to login to dowload datasets from EGA - European Genome-phenome Archive?
java
22 months ago by vinayjrao ▴ 210
1
vote
1
reply
357
views
Appending output to a vector in R
R
updated 2.0 years ago by 2.6k • written 2.0 years ago by ▴ 210
0
votes
0
replies
1.1k
views
Comment: C: Annotating VCF files
2.0 years ago by vinayjrao ▴ 210
0
votes
3
replies
1.1k
views
Annotating VCF files
snp
2.0 years ago by vinayjrao ▴ 210
0
votes
1
reply
690
views
Which of the output files of TrimGalore! must I align?
sequencing alignment SNP
2.1 years ago by vinayjrao ▴ 210
0
votes
0
replies
694
views
Comment: C: How to annotate variants offline using ANNOVAR?
2.2 years ago by vinayjrao ▴ 210
0
votes
1
reply
694
views
Comment: C: How to annotate variants offline using ANNOVAR?
2.2 years ago by vinayjrao ▴ 210
0
votes
4
replies
694
views
How to annotate variants offline using ANNOVAR?
SNP
2.2 years ago by vinayjrao ▴ 210
0
votes
0
replies
352
views
Filtering wANNOVAR output on terminal
SNP
2.2 years ago by vinayjrao ▴ 210
1
vote
1
reply
492
views
What type of duplicates are to be removed while analyzing whole exome data?
SNP Exome-Seq
2.3 years ago by vinayjrao ▴ 210
7
votes
5
replies
602
views
Correlation between coverage and variant calling
Exome-Seq SNP variant_calling
updated 2.6 years ago by ▴ 430 • written 2.6 years ago by ▴ 210
0
votes
0
replies
602
views
Comment: C: Correlation between coverage and variant calling
2.6 years ago by vinayjrao ▴ 210
1
vote
14
replies
6.9k
views
Ballgown Error in file(file, "rt") : invalid 'description' argument
RNA-Seq ballgown
updated 3.1 years ago by ▴ 10 • written 5.1 years ago by ▴ 210
9
votes
1
reply
29k
views
Interpreting GSEA enrichment plots/results
RNA-Seq gsea
updated 3.2 years ago by ▴ 50 • written 3.6 years ago by ▴ 210
3
votes
2
replies
705
views
Filtering 2-fold differentially expressed genes
R Microarray
updated 3.3 years ago by 9.9k • written 3.3 years ago by ▴ 210
0
votes
0
replies
809
views
Comment: C: Averaging multiple columns
3.3 years ago by vinayjrao ▴ 210
174 results • Page 1 of 4
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