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60
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Variants in untargeted genes identified after targeted exome sequencing analysis
snp exome
7 days ago by vinayjrao ▴ 200
0
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0
replies
557
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Comment: Comment: Unable to overcome troubles in whole exome analysis
7 days ago by vinayjrao ▴ 200
0
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0
replies
557
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
7 days ago by vinayjrao ▴ 200
2
votes
10
replies
557
views
Unable to overcome troubles in whole exome analysis
exome mark picard seq duplicates
7 days ago by vinayjrao ▴ 200
1
vote
1
reply
557
views
Answer: Answer: Unable to overcome troubles in whole exome analysis
20 days ago by vinayjrao ▴ 200
0
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0
replies
557
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
22 days ago by vinayjrao ▴ 200
0
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1
reply
557
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
22 days ago by vinayjrao ▴ 200
0
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0
replies
557
views
Comment: Comment: Unable to overcome troubles in whole exome analysis
22 days ago by vinayjrao ▴ 200
0
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0
replies
173
views
How to annotate variants against hs37d5?
SNP annotation
6 months ago by vinayjrao ▴ 200
3
votes
7
replies
8.2k
views
Calculating fpkm from raw counts
RNA-Seq R fpkm
updated 25 days ago by • 0 • written 3.5 years ago by ▴ 200
0
votes
0
replies
313
views
Is it possible to call variants using cram files?
next-gen sequencing SNP
7 months ago by vinayjrao ▴ 200
0
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0
replies
364
views
Unable to convert from cram to bam
SNP software error sequencing next-gen
7 months ago by vinayjrao ▴ 200
0
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0
replies
2.6k
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Comment: C: Issue With CRAM -> BAM -> FASTQ Conversion
7 months ago by vinayjrao ▴ 200
0
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0
replies
246
views
Comment: C: Ignore replacing a comma within quotes
7 months ago by vinayjrao ▴ 200
0
votes
1
reply
246
views
Comment: C: Ignore replacing a comma within quotes
7 months ago by vinayjrao ▴ 200
0
votes
0
replies
246
views
Comment: C: Ignore replacing a comma within quotes
7 months ago by vinayjrao ▴ 200
0
votes
1
reply
246
views
Comment: C: Ignore replacing a comma within quotes
7 months ago by vinayjrao ▴ 200
2
votes
8
replies
246
views
Ignore replacing a comma within quotes
sed awk regex
7 months ago by vinayjrao ▴ 200
0
votes
0
replies
543
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
9 months ago by vinayjrao ▴ 200
0
votes
1
reply
543
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
9 months ago by vinayjrao ▴ 200
10
votes
4
replies
543
views
Recalibrating variants in GATK4.1 as compared to GATK3.7
SNP GATK
updated 9 months ago by ★ 1.5k • written 9 months ago by ▴ 200
0
votes
1
reply
284
views
Comment: C: Compare elements between rows and columns
9 months ago by vinayjrao ▴ 200
2
votes
3
replies
284
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Compare elements between rows and columns
shell awk RNA-Seq
9 months ago by vinayjrao ▴ 200
0
votes
1
reply
460
views
Comment: C: Converting CRAM slices to get a CRAM file
10 months ago by vinayjrao ▴ 200
3
votes
4
replies
460
views
Converting CRAM slices to get a CRAM file
samtools
updated 10 months ago by ▴ 720 • written 10 months ago by ▴ 200
0
votes
0
replies
615
views
Comment: C: Create files in multiple directories via for loop
10 months ago by vinayjrao ▴ 200
0
votes
1
reply
615
views
Comment: C: Create files in multiple directories via for loop
10 months ago by vinayjrao ▴ 200
0
votes
1
reply
615
views
Comment: C: Create files in multiple directories via for loop
10 months ago by vinayjrao ▴ 200
0
votes
1
reply
615
views
Comment: C: Create files in multiple directories via for loop
10 months ago by vinayjrao ▴ 200
3
votes
9
replies
615
views
Create files in multiple directories via for loop
shell linux
10 months ago by vinayjrao ▴ 200
0
votes
0
replies
875
views
Comment: C: Converting tsv into bam file
11 months ago by vinayjrao ▴ 200
1
vote
3
replies
875
views
Converting tsv into bam file
genome sequencing R linux
updated 11 months ago by 11k • written 11 months ago by ▴ 200
1
vote
1
reply
510
views
Answer: C: How to login to dowload datasets from EGA - European Genome-phenome Archive?
11 months ago by vinayjrao ▴ 200
3
votes
3
replies
510
views
How to login to dowload datasets from EGA - European Genome-phenome Archive?
java
11 months ago by vinayjrao ▴ 200
1
vote
1
reply
237
views
Appending output to a vector in R
R
updated 12 months ago by ★ 2.2k • written 12 months ago by ▴ 200
0
votes
0
replies
548
views
Comment: C: Annotating VCF files
12 months ago by vinayjrao ▴ 200
0
votes
3
replies
548
views
Annotating VCF files
snp
12 months ago by vinayjrao ▴ 200
0
votes
1
reply
395
views
Which of the output files of TrimGalore! must I align?
sequencing alignment SNP
13 months ago by vinayjrao ▴ 200
0
votes
0
replies
460
views
Comment: C: How to annotate variants offline using ANNOVAR?
15 months ago by vinayjrao ▴ 200
0
votes
1
reply
460
views
Comment: C: How to annotate variants offline using ANNOVAR?
15 months ago by vinayjrao ▴ 200
0
votes
4
replies
460
views
How to annotate variants offline using ANNOVAR?
SNP
15 months ago by vinayjrao ▴ 200
0
votes
0
replies
230
views
Filtering wANNOVAR output on terminal
SNP
15 months ago by vinayjrao ▴ 200
1
vote
1
reply
293
views
What type of duplicates are to be removed while analyzing whole exome data?
SNP Exome-Seq
15 months ago by vinayjrao ▴ 200
7
votes
5
replies
386
views
Correlation between coverage and variant calling
Exome-Seq SNP variant_calling
updated 20 months ago by ▴ 360 • written 20 months ago by ▴ 200
0
votes
0
replies
386
views
Comment: C: Correlation between coverage and variant calling
20 months ago by vinayjrao ▴ 200
0
votes
14
replies
5.6k
views
Ballgown Error in file(file, "rt") : invalid 'description' argument
RNA-Seq ballgown
updated 2.2 years ago by • 0 • written 4.1 years ago by ▴ 200
6
votes
1
reply
18k
views
Interpreting GSEA enrichment plots/results
RNA-Seq gsea
updated 2.2 years ago by ▴ 30 • written 2.6 years ago by ▴ 200
3
votes
2
replies
517
views
Filtering 2-fold differentially expressed genes
R Microarray
updated 2.3 years ago by 9.6k • written 2.3 years ago by ▴ 200
0
votes
0
replies
551
views
Comment: C: Averaging multiple columns
2.3 years ago by vinayjrao ▴ 200
0
votes
0
replies
551
views
Comment: C: Averaging multiple columns
2.3 years ago by vinayjrao ▴ 200
173 results • Page 1 of 4
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