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User: Raony Guimarães

gravatar for Raony Guimarães
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Location:
Dublin / Ireland
Website:
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raonyguimaraes
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Last seen:
6 hours ago
Joined:
7 years, 7 months ago
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r*************@gmail.com

PhD in Bioinformatics with experience in developing software and methods to the fields of Precision Medicine and Pharmacogenomics.

Currently working for a company called Genomics Medicine Ireland developing Bioinformatics software for doing NGS analysis.

Posts by Raony Guimarães

<prev • 77 results • page 1 of 8 • next >
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Comment: C: How to create 1000G_phase1.snps.high_confidence.hg19.sites.vcf ?
... Here you find an explanation about what makes it having high confidence: https://media.nature.com/original/nature-assets/nature/journal/v491/n7422/extref/nature11632-s1.pdf It was a combination of multiple strategies. ...
written 22 days ago by Raony Guimarães • 970
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Comment: C: Convert VCFf file to plink ped/map format while filtering the SNPs
... I think you need samples in your vcf to calculate the minor allele frequency. If you are using --allow-no-samples your vcf might have no samples to calculate it from. ...
written 22 days ago by Raony Guimarães • 970
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Answer: A: How to combine a multi sample VCF from multiple sample VCF?
... You could merge the files with bcftools: bcftools merge -O z -o merged.vcf.gz sample1.vcf.gz sample2.vcf.gz ...
written 9 weeks ago by Raony Guimarães • 970
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Answer: A: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 201
... A map of constrained coding regions in the human genome https://www.nature.com/articles/s41588-018-0294-6 ...
written 9 weeks ago by Raony Guimarães • 970
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Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2018?
... What do you think were the most influential Bioinformatics/Computational Biology Papers/methods/discovery Of 2018? Previous Discussions [What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2017?][1] [What Are The Most Influential Bioinformatics/Computational Biology Paper ...
bioinformatics forum papers survey snp written 9 weeks ago by Raony Guimarães • 970 • updated 9 weeks ago by zx8754 ♦ 6.8k
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Answer: A: Redundant Group Of Proteins.
... I would try to find the minimum amount of common proteins between the 24 organisms. ...
written 3 months ago by Raony Guimarães • 970
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Answer: A: How to convert vcf to MAF ?
... Perl method works well and is the most recommend :) https://github.com/mskcc/vcf2maf You don't necessarily need an EXaC vcf to annotate, but you will need VEP. ...
written 3 months ago by Raony Guimarães • 970
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Answer: A: Comparing VCF files between two groups (15 vcf files against 15 vcf files)
... It really depends on what you want to achieve with this comparison. You could merge all VCFs and do an association analysis between the two populations using plink to find differences between the two groups or you could do a PCA using all samples to see if the two populations have a clear separation ...
written 3 months ago by Raony Guimarães • 970
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Comment: C: Why I can not update R?
... Microsft R is just packaged differently than traditional R and it probably adds itself to the $PATH correctly. You will probably need to reinstall your packages with install.packages but you will get a much better multithread performance. ...
written 5 months ago by Raony Guimarães • 970
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Comment: A: Why I can not update R?
... I would recommend you try to install Microsoft R: https://mran.blob.core.windows.net/install/mro/3.5.1/microsoft-r-open-3.5.1.pkg ...
written 5 months ago by Raony Guimarães • 970

Latest awards to Raony Guimarães

Voter 24 days ago, voted more than 100 times.
Guru 9 weeks ago, received more than 100 upvotes.
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Scholar 3 months ago, created an answer that has been accepted. For A: genome browser with genomic coordinate
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Scholar 12 months ago, created an answer that has been accepted. For A: genome browser with genomic coordinate
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Popular Question 15 months ago, created a question with more than 1,000 views. For 1000 Genomes Yri Trio, Ncbi36/37 And Rs334
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
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Great Question 22 months ago, created a question with more than 5,000 views. For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
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Scholar 2.7 years ago, created an answer that has been accepted. For A: genome browser with genomic coordinate
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Popular Question 3.3 years ago, created a question with more than 1,000 views. For 1000 Genomes Yri Trio, Ncbi36/37 And Rs334
Scholar 3.7 years ago, created an answer that has been accepted. For A: genome browser with genomic coordinate
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
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