User: Raony Guimarães
Raony Guimarães • 850
- Reputation:
- 850
- Status:
- Trusted
- Location:
- Dublin / Ireland
- Website:
- https://raonyguimaraes...
- Twitter:
- raonyguimaraes
- Scholar ID:
- Google Scholar Page
- Last seen:
- a minute ago
- Joined:
- 7 years, 1 month ago
- Email:
- r*************@gmail.com
PhD in Bioinformatics with experience in developing software and methods to the fields of Precision Medicine and Pharmacogenomics.
Currently working for a company called Genomics Medicine Ireland developing Bioinformatics software for doing NGS analysis.
Posts by Raony Guimarães
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3
votes
3
answers
217
views
3
answers
... You could use [PostgreSQL][1] and [JsonB][2] to get the best of both worlds: [relational and non-relational][3] features.
[1]: https://www.postgresql.org/
[2]: https://www.postgresql.org/docs/9.4/static/datatype-json.html
[3]: https://blog.codeship.com/unleash-the-power-of-storing-json-in-po ...
written 4 days ago by
Raony Guimarães • 850
2
votes
2
answers
260
views
2
answers
Answer:
A: Clustering large data
... You could use scikit-learn http://scikit-learn.org
http://scikit-learn.org/stable/modules/clustering.html#clustering ...
written 6 months ago by
Raony Guimarães • 850
3
votes
5
answers
534
views
5
answers
... Hi there,
Just want to say I made [mendelmd.org][1] for that.
It's free and open source!
[1]: http://mendelmd.org ...
written 7 months ago by
Raony Guimarães • 850
0
votes
1
answer
522
views
1
answers
Answer:
A: VQSRTranche filters in GATK
... This image explains more about the tranches
 ...
written 8 months ago by
Raony Guimarães • 850
0
votes
3
answers
675
views
3
answers
... You need to provide a bed file with the target regions specific to your exome target kit or you can use a generic with the official list of exome regions from UCSC.
...
written 8 months ago by
Raony Guimarães • 850
0
votes
1
answer
981
views
1
answers
Comment:
C: GATK Unified Genotyper
... Yes, this is only a warning. ...
written 8 months ago by
Raony Guimarães • 850
0
votes
1
answer
981
views
1
answers
Answer:
A: GATK Unified Genotyper
... This is likely happening because you are not giving enough memory to java with the parameter: -Xmx
Try running it again with the following command:
java -Xmx 32g -jar GenomeAnalysisTK.jar -T UnifiedGenotyper -R hg38.fa -I /home/likithreddy/Documents/Cancergenomics/ReadgroupsSRR098401mem_pesort.ba ...
written 8 months ago by
Raony Guimarães • 850
2
votes
2
answers
2.1k
views
2
answers
Answer:
A: Number of Threads for BWA MEM
... Are you looking for something like this ?
Source: http://en.community.dell.com/techcenter/high-performance-computing/b/genomics ...
written 8 months ago by
Raony Guimarães • 850
0
votes
2
answers
375
views
2
answers
... Are you looking for Blast2GO ?
"Blast2GO offers the possibility of direct statistical analysis on gene function information. A common analysis is the statistical assessment of GO term enrichment in a group of interesting genes when compared to a reference group i.e. to asses the functional differen ...
written 8 months ago by
Raony Guimarães • 850
0
votes
2
answers
382
views
2
answers
Answer:
A: SNP single end read
... Yes it's possible.
Take a look at:
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
https://github.com/GATB/DiscoSnp
Reference-free SNP detection: dealing with the data deluge
https://www.ncbi.nlm.nih. ...
written 8 months ago by
Raony Guimarães • 850
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3 days ago,
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For A: How To Map The Fastq With Paired-End Seq Combined In One File
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For A: genome browser with genomic coordinate
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For 1000 Genomes Yri Trio, Ncbi36/37 And Rs334
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For A: How To Map The Fastq With Paired-End Seq Combined In One File
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For A: How To Map The Fastq With Paired-End Seq Combined In One File
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For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
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19 months ago,
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For A: How To Map The Fastq With Paired-End Seq Combined In One File
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2.3 years ago,
created an answer that has been accepted.
For A: genome browser with genomic coordinate
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2.5 years ago,
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For A: How To Map The Fastq With Paired-End Seq Combined In One File
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2.8 years ago,
created a question with more than 1,000 views.
For 1000 Genomes Yri Trio, Ncbi36/37 And Rs334
Scholar
3.2 years ago,
created an answer that has been accepted.
For A: genome browser with genomic coordinate
Popular Question
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For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
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For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
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Teacher
5.2 years ago,
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For A: How Important Is It To Gather New Controls For Whole Genome And Exome Variant St
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5.7 years ago,
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For A: How To Map The Fastq With Paired-End Seq Combined In One File
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For A: Machine Learning Tutorials In Python
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For Chip-Seq Data Analysis
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For A: Gatk Alignertargetcreator Error
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