User: Raony Guimarães

Reputation:
860
Status:
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Location:
Dublin / Ireland
Website:
https://raonyguimaraes...
Twitter:
raonyguimaraes
Scholar ID:
Google Scholar Page
Last seen:
2 hours ago
Joined:
7 years, 3 months ago
Email:
r*************@gmail.com

PhD in Bioinformatics with experience in developing software and methods to the fields of Precision Medicine and Pharmacogenomics.

Currently working for a company called Genomics Medicine Ireland developing Bioinformatics software for doing NGS analysis.

Posts by Raony Guimarães

<prev • 69 results • page 1 of 7 • next >
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Comment: C: Why I can not update R?
... Microsft R is just packaged differently than traditional R and it probably adds itself to the $PATH correctly. You will probably need to reinstall your packages with install.packages but you will get a much better multithread performance. ...
written 5 weeks ago by Raony Guimarães860
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Comment: A: Why I can not update R?
... I would recommend you try to install Microsoft R: https://mran.blob.core.windows.net/install/mro/3.5.1/microsoft-r-open-3.5.1.pkg ...
written 5 weeks ago by Raony Guimarães860
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Answer: A: Which database software is better for bioinformatics web development? MySQL or M
... You could use [PostgreSQL][1] and [JsonB][2] to get the best of both worlds: [relational and non-relational][3] features. [1]: https://www.postgresql.org/ [2]: https://www.postgresql.org/docs/9.4/static/datatype-json.html [3]: https://blog.codeship.com/unleash-the-power-of-storing-json-in-po ...
written 8 weeks ago by Raony Guimarães860
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Answer: A: Clustering large data
... You could use scikit-learn http://scikit-learn.org http://scikit-learn.org/stable/modules/clustering.html#clustering ...
written 8 months ago by Raony Guimarães860
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Answer: A: opensource grafical user interface for filtering millions of annotated variant
... Hi there, Just want to say I made [mendelmd.org][1] for that. It's free and open source! [1]: http://mendelmd.org ...
written 9 months ago by Raony Guimarães860
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Answer: A: VQSRTranche filters in GATK
... This image explains more about the tranches ![](https://us.v-cdn.net/5019796/uploads/FileUpload/b6/ef1c4b5fe263e3a24fea6848776cd8.jpeg) ...
written 10 months ago by Raony Guimarães860
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Answer: A: Do I need to provide the Illumina's target region bed file for qualimap?
... You need to provide a bed file with the target regions specific to your exome target kit or you can use a generic with the official list of exome regions from UCSC. ...
written 10 months ago by Raony Guimarães860
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Comment: C: GATK Unified Genotyper
... Yes, this is only a warning. ...
written 10 months ago by Raony Guimarães860
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Answer: A: GATK Unified Genotyper
... This is likely happening because you are not giving enough memory to java with the parameter: -Xmx Try running it again with the following command: java -Xmx 32g -jar GenomeAnalysisTK.jar -T UnifiedGenotyper -R hg38.fa -I /home/likithreddy/Documents/Cancergenomics/ReadgroupsSRR098401mem_pesort.ba ...
written 10 months ago by Raony Guimarães860
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Answer: A: Number of Threads for BWA MEM
... Are you looking for something like this ? ![alt text](http://en.community.dell.com/cfs-file/__key/communityserver-blogs-components-weblogfiles/00-00-00-45-24/1447.bwa_2D00_scaling.png "Logo Title Text 1") Source: http://en.community.dell.com/techcenter/high-performance-computing/b/genomics ...
written 10 months ago by Raony Guimarães860

Latest awards to Raony Guimarães

Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Scholar 8 months ago, created an answer that has been accepted. For A: genome browser with genomic coordinate
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Popular Question 11 months ago, created a question with more than 1,000 views. For 1000 Genomes Yri Trio, Ncbi36/37 And Rs334
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Great Question 17 months ago, created a question with more than 5,000 views. For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Scholar 2.4 years ago, created an answer that has been accepted. For A: genome browser with genomic coordinate
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Exome 101
Popular Question 3.0 years ago, created a question with more than 1,000 views. For 1000 Genomes Yri Trio, Ncbi36/37 And Rs334
Scholar 3.4 years ago, created an answer that has been accepted. For A: genome browser with genomic coordinate
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
Popular Question 4.3 years ago, created a question with more than 1,000 views. For Is It Nonsense To Have Sift/Polyphen2 Scores For Nonsense Variants ?
Autobiographer 4.6 years ago, has more than 80 characters in the information field of the user's profile.
Supporter 4.6 years ago, voted at least 25 times.
Teacher 5.4 years ago, created an answer with at least 3 up-votes. For A: How Important Is It To Gather New Controls For Whole Genome And Exome Variant St
Teacher 5.8 years ago, created an answer with at least 3 up-votes. For A: How To Map The Fastq With Paired-End Seq Combined In One File
Teacher 5.9 years ago, created an answer with at least 3 up-votes. For A: Machine Learning Tutorials In Python
Appreciated 5.9 years ago, created a post with more than 5 votes. For A: Machine Learning Tutorials In Python
Appreciated 6.5 years ago, created a post with more than 5 votes. For Chip-Seq Data Analysis
Popular Question 6.5 years ago, created a question with more than 1,000 views. For Chip-Seq Data Analysis
Good Answer 6.7 years ago, created an answer that was upvoted at least 5 times. For A: Gatk Alignertargetcreator Error
Teacher 6.7 years ago, created an answer with at least 3 up-votes. For A: Gatk Alignertargetcreator Error

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