Moderator: Nicolas Rosewick

gravatar for Nicolas Rosewick
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Posts by Nicolas Rosewick

<prev • 857 results • page 1 of 86 • next >
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Comment: C: statistical analyses for tanscriptomes
... which type of expression data you have (rna-seq, microarray, etc...) ? ...
written 2 hours ago by Nicolas Rosewick7.4k
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Answer: A: How to access specifically 30x NA12878 sequencing runs
... You are welcome : http://www.internationalgenome.org/data-portal/sample/NA12878 ...
written 10 days ago by Nicolas Rosewick7.4k
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Mutation Co-occurence and exclusivity
... Hi, I would like to compute mutation co-occurence and exclusivity analysis. My first idea was to performed a fisher exact test. But after doing some litterature research there are already some tools to compute mutation mutual exclusivity that takes into account overall tumor-specific alterations . ...
mutation exclusivity co-occurence written 11 days ago by Nicolas Rosewick7.4k
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Comment: C: Match col values in two datasets and merge the matched rows in a final o/p_SNPs
... check here : https://pandas.pydata.org/pandas-docs/stable/user_guide/merging.html and here : https://jakevdp.github.io/PythonDataScienceHandbook/03.07-merge-and-join.html . In a nutshell : use `pd.merge()` ...
written 12 days ago by Nicolas Rosewick7.4k
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Comment: C: Plotting overlapping genomic segments in R
... You should then try the `reduce()` function from `GenomicRanges` R package. ...
written 12 days ago by Nicolas Rosewick7.4k
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Comment: C: Plotting overlapping genomic segments in R
... you can start with that : https://stackoverflow.com/questions/20577492/finding-overlapping-regions-of-chromosome-with-granges ...
written 12 days ago by Nicolas Rosewick7.4k
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Comment: C: Fastest (non-pseudo) aligner for RNA-seq illumina seq data (year 2019)
... what do you mean by > Retroviruses do not have RNA ...
written 12 days ago by Nicolas Rosewick7.4k
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Comment: C: Match col values from two different datasets (dbSNP ID's) and merge dataset
... Creating a new profile to post the same question will not increase your chance to have an answer. We already suggested you some way to merge two datasets by SNP id ...
written 13 days ago by Nicolas Rosewick7.4k
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Comment: C: Match col values in two datasets and merge the matched rows in a final o/p_SNPs
... as I said in my previous comment : start with R dplyr : https://rpubs.com/williamsurles/293454 ...
written 13 days ago by Nicolas Rosewick7.4k
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Comment: C: Match col values in two datasets and merge the matched rows in a final o/p_SNPs
... in R check dplyr's full_join (or left_join) using SNP ID as key . Then use select() to extract the columns of interest. Basic R stuff. ...
written 13 days ago by Nicolas Rosewick7.4k

Latest awards to Nicolas Rosewick

Popular Question 15 days ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Popular Question 17 days ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Teacher 20 days ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Great Question 8 weeks ago, created a question with more than 5,000 views. For featureCounts exon counting problem
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Scholar 8 weeks ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Commentator 8 weeks ago, created a comment with at least 3 up-votes. For C: What Regulates Alternative Splicing And Intergenic Trans Splicing?
Good Answer 9 weeks ago, created an answer that was upvoted at least 5 times. For A: How Do I Make A Heatmap In R?
Scholar 9 weeks ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Appreciated 9 weeks ago, created a post with more than 5 votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Scholar 9 weeks ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Scholar 12 weeks ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Popular Question 3 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
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