User: Nicolas Rosewick

gravatar for Nicolas Rosewick
Reputation:
5,720
Status:
Trusted
Location:
Belgium, Brussels, Université Libre de Bruxelles / Université de Liège
Website:
https://nrosewick.gith...
Twitter:
nrosewick
Scholar ID:
Google Scholar Page
Last seen:
12 hours ago
Joined:
6 years, 3 months ago
Email:
n***************@gmail.com

Posts by Nicolas Rosewick

<prev • 690 results • page 1 of 69 • next >
0
votes
3
answers
140
views
3
answers
Answer: A: Hamming distance of paired-end data from target amplicon sequencing
... You can check on this blog post there are multiple tools listed : http://thegenomefactory.blogspot.be/2012/11/tools-to-merge-overlapping-paired-end.html Here are the listed files from the blog post: - PEAR (Paired-End Read Merger) : http://sco.h-its.org/exelixis/web/software/pear/doc.html (* thi ...
written 7 days ago by Nicolas Rosewick5.7k
0
votes
1
answer
112
views
1
answers
Comment: C: Scatter Plot for two sample condition
... ok so the answer in my comment just above is ok for you ? ...
written 7 days ago by Nicolas Rosewick5.7k
0
votes
1
answer
112
views
1
answers
Comment: C: Scatter Plot for two sample condition
... I thought all genes were found in the two samples ? You could add an additional column to check if the gene is found in the sample of interest (so > 0). data1$inHSC <- ifelse(data1$HSC>0,TRUE,FALSE) and then ggplot(data1,aes(x=HSC,y=CMP,col=inHSC)) + geom_point() + geom_smooth(m ...
written 7 days ago by Nicolas Rosewick5.7k
1
vote
1
answer
112
views
1
answers
Comment: C: Scatter Plot for two sample condition
... Maybe you question is not clear. You want a scatterplot where each point is colored based on a variable (in this case defined in the "variable" column). If yes then my answer should work. ...
written 7 days ago by Nicolas Rosewick5.7k
0
votes
1
answer
112
views
1
answers
Comment: C: Scatter Plot for two sample condition
... I edited my answer. So each point will be colored relative to the "variable" variable. ...
written 7 days ago by Nicolas Rosewick5.7k
0
votes
1
answer
112
views
1
answers
Comment: C: Scatter Plot for two sample condition
... what is the variabl "variable" ? I do not see it in your original question. ...
written 7 days ago by Nicolas Rosewick5.7k
1
vote
1
answer
112
views
1
answers
Answer: A: Scatter Plot for two sample condition
... If I understand well you want a scatterplot with a linear regression ? >Edit to take your comment into account i.e. the color variable using ggplot if data1 is your dataframe : ggplot(data1,aes(x=HSC,y=CMP,col=variable)) + geom_point() + geom_smooth(method = "lm ...
written 7 days ago by Nicolas Rosewick5.7k
1
vote
2
answers
133
views
2
answers
Comment: C: differential expression analysis
... its TRUE not true. So `pvalue.exprSet = apply(exprSet, 1, function(x){t.test(x[1:4], x[5:17],var.equal = TRUE) $p.value})` ...
written 10 days ago by Nicolas Rosewick5.7k
0
votes
2
answers
133
views
2
answers
Comment: C: differential expression analysis
... Did you use adjusted p-values ? or nominal p-values prior multitesing correction ? You should use adjusted ones. ...
written 11 days ago by Nicolas Rosewick5.7k
0
votes
0
answers
110
views
0
answers
Comment: C: How to increase the speed of miRanda target prediction program?
... I uses miRanda some time ago and it was ok in terms of speed (it was ~10 putative miRNA sequences against all cDNA sequences (~35.000 sequences)). In my memory it was like a couple of hours.. Could you explain your setup please ? and also the computational time ? ...
written 11 days ago by Nicolas Rosewick5.7k

Latest awards to Nicolas Rosewick

Popular Question 7 days ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Teacher 25 days ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Scholar 25 days ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Scholar 25 days ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Popular Question 27 days ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Teacher 29 days ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Commentator 29 days ago, created a comment with at least 3 up-votes. For C: What Regulates Alternative Splicing And Intergenic Trans Splicing?
Scholar 29 days ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Great Question 4 weeks ago, created a question with more than 5,000 views. For Tophat: Compressed Fastq File (Gz)
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: What Regulates Alternative Splicing And Intergenic Trans Splicing?
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Gene Fusion Detection: Rna-Seq Data
Commentator 8 weeks ago, created a comment with at least 3 up-votes. For C: What Regulates Alternative Splicing And Intergenic Trans Splicing?
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Great Question 10 weeks ago, created a question with more than 5,000 views. For Tophat: Compressed Fastq File (Gz)
Great Question 10 weeks ago, created a question with more than 5,000 views. For Tophat: Compressed Fastq File (Gz)
Student 10 weeks ago, asked a question with at least 3 up-votes. For Tophat: Compressed Fastq File (Gz)
Commentator 11 weeks ago, created a comment with at least 3 up-votes. For C: What Regulates Alternative Splicing And Intergenic Trans Splicing?
Popular Question 3 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Good Question 3 months ago, asked a question that was upvoted at least 5 times. For Best Bioinformatic And Molecular Biology Software Package
Popular Question 4 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Appreciated 4 months ago, created a post with more than 5 votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Scholar 4 months ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 666 users visited in the last hour