Moderator: Nicolas Rosewick

gravatar for Nicolas Rosewick
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Posts by Nicolas Rosewick

<prev • 1,053 results • page 1 of 106 • next >
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Comment: C: increase spacing between groups in a bar plot
... could you post your ggplot command in order to reproduce your plot ? ...
written 9 days ago by Nicolas Rosewick9.2k
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Comment: C: increase spacing between groups in a bar plot
... quick google search : https://stackoverflow.com/questions/6085238/adding-space-between-bars-in-ggplot2 ...
written 9 days ago by Nicolas Rosewick9.2k
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Comment: C: Strange plots I got from R studio
... without any more information (code, reproducible dataset/example, figures) we can not help you. Please edit your question accordingly ...
written 10 days ago by Nicolas Rosewick9.2k
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Answer: A: What is the VEP Impact column?
... Everything is explained on ENSEMBL website : https://www.ensembl.org/info/genome/variation/prediction/predicted_data.html and here : https://www.ensembl.org/Help/Glossary **Variant impact** A subjective classification of the severity of the variant consequence, based on agreement with SNPEff. **M ...
written 10 days ago by Nicolas Rosewick9.2k
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Comment: C: RNA seq data analysis and building co expression network
... please do not use excel to do bioinformatics (or to handle any kind of genomic data). Please try appropriate tools/language such as R to manipulate gene count tables. ...
written 15 days ago by Nicolas Rosewick9.2k
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Comment: C: Weird results in TopHat2 paired-end alignment
... FYI : https://twitter.com/lpachter/status/937055346987712512?lang=fr ...
written 17 days ago by Nicolas Rosewick9.2k
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Comment: C: GWAS results and linkage disequilibrium issue
... IMO You should try to use a fine-mapping tool e.g. FINEMAP in order to get the causal SNP. Then use this SNP as reference SNP and report all SNPs in the neighborhood that are significant and their associated LD R2 with the reference SNP. Also I would use only the putative causal SNP for the risk sco ...
written 27 days ago by Nicolas Rosewick9.2k
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Comment: C: converting vcf into simpler version for downstream analysis
... could you explain which downstream analysis you want to do. Please edit the question to be more specific ...
written 4 weeks ago by Nicolas Rosewick9.2k
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Comment: C: Subset VCF file by comparing CHROM,POS,REF and ALT
... @RamRS if you still have your solution, I would be happy to take a look :) ...
written 6 weeks ago by Nicolas Rosewick9.2k
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Comment: C: separate the figure
... What did you try ? It seems that you ask a lot of questions lately on scRNA-Seq data analysis. There is a lot of documentation on Seurat website. ...
written 8 weeks ago by Nicolas Rosewick9.2k

Latest awards to Nicolas Rosewick

Good Answer 7 days ago, created an answer that was upvoted at least 5 times. For A: How Do I Make A Heatmap In R?
Appreciated 8 days ago, created a post with more than 5 votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Teacher 10 days ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Popular Question 11 days ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Teacher 16 days ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Popular Question 22 days ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Appreciated 24 days ago, created a post with more than 5 votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data
Librarian 4 weeks ago, created a post with more than 10 bookmarks. For Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
Epic Question 11 weeks ago, created a question with more than 10,000 views. For bigwig to peak
Prophet 3 months ago, created a post with more than 20 followers. For Insert Size And Fragment Size ?
Great Question 3 months ago, created a question with more than 5,000 views. For bigwig to peak
Scholar 3 months ago, created an answer that has been accepted. For C: How to increase cytoscape memory?
Popular Question 3 months ago, created a question with more than 1,000 views. For Gviz : fill and line arrow color issues
Popular Question 3 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Epic Question 3 months ago, created a question with more than 10,000 views. For bigwig to peak
Popular Question 4 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Popular Question 4 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Student 4 months ago, asked a question with at least 3 up-votes. For tRNA expression analysis from RNA-Seq
Popular Question 5 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Popular Question 5 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Great Question 5 months ago, created a question with more than 5,000 views. For Cutadapt Or Fastx Clipper
Popular Question 5 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Popular Question 6 months ago, created a question with more than 1,000 views. For Plot Alignment With Gviz
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: What Regulates Alternative Splicing And Intergenic Trans Splicing?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Hierarchical Clustering And Heatmap Analysis For Rna-Seq Data

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