Moderator: Eric Normandeau

gravatar for Eric Normandeau
Eric Normandeau9.4k
Reputation:
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Location:
Quebec, Canada
Website:
http://github.com/enor...
Last seen:
1 week, 3 days ago
Joined:
7 years, 1 month ago
Email:
e**************@hotmail.com
  • Biologist turned bioinformatician, fluent in Python, R, and bash, now learning C

  • I have worked with microarrays, qRT-PCR and am currently working with RAD sequencing, Genotyping by Sequencing, and RNA-Seq.

  • If you are new to biostar, you can read the following: How to ask Good Questions on Technical and Scientific Forums

Posts by Eric Normandeau

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Comment: C: Programming language use distribution from recent programs / articles
... Working :) I'll see if I can tweak the code to add languages or add things as needed. ...
written 23 days ago by Eric Normandeau9.4k
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Comment: C: Programming language use distribution from recent programs / articles
... I cloned and compiled (with make) jvarkit. How do I run the code for PubmedCodingLanguages? Java newbie here :) EDIT: I also tried `javac PubmedCodingLanguages.java` but got errors. Not sure it is meant to be compiled by itself. ...
written 23 days ago by Eric Normandeau9.4k
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Comment: C: Programming language use distribution from recent programs / articles
... That's more like it ;) Nicely done! What about newer languages, like golang, rust... Do you need to add code to detect these? ...
written 24 days ago by Eric Normandeau9.4k
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Comment: C: Programming language use distribution from recent programs / articles
... I up vote your answer and Pierre's code snippet because both are awesome, but this is not really what I am looking for. These are GitHub projects mentioning the word "bioinformatics" in the description (EDIT or somewhere in the file or directory names). It seems the gap between this and published p ...
written 24 days ago by Eric Normandeau9.4k
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Comment: C: Programming language use distribution from recent programs / articles
... I saw it pass too but didn't really look at it much last time. It is quite interesting :) ...
written 24 days ago by Eric Normandeau9.4k
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Forum: Programming language use distribution from recent programs / articles
... I would be interested to see a breakdown distribution of the different programming languages used for recently published bioinformatic programs. I suspect such a breakdown isn't available, but **would there be a good enough source or quick and dirty way of assessing this?** If possible, without hav ...
programming_language programs forum written 24 days ago by Eric Normandeau9.4k • updated 24 days ago by Pierre Lindenbaum94k
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Comment: C: Tool Recommendation Wanted For Cleaning Fasta/Fastq Files To Remove Unpaired Rea
... The script is still available and multiple people are reporting using it with success. ...
written 6 weeks ago by Eric Normandeau9.4k
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Comment: C: Pre-index database from fasta file for vsearch
... Thanks. I wrote a comment in that thread. ...
written 7 weeks ago by Eric Normandeau9.4k
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Pre-index database from fasta file for vsearch
... I am running multiple instances of `vsearch --usearch_global` and I would like to save on the database indexing time, which represents about 80 to 90% of the time in my case. I haven't seen a way to pre-index databases from fasta file for vsearch but I may have overlooked a documentation source. Do ...
database vsearch index written 7 weeks ago by Eric Normandeau9.4k
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Comment: C: writing bash script with python
... I did wanted to close originally but I didn't. We'll see if a new question by OP will come up. ...
written 7 months ago by Eric Normandeau9.4k

Latest awards to Eric Normandeau

Appreciated 5 weeks ago, created a post with more than 5 votes. For C: What'S The Best Generic Scripting Tool For Bioinformatics?
Great Question 5 weeks ago, created a question with more than 5,000 views. For Snp Detection And Genotyping In Ngs (Next Generation Sequencing)
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Retrieving Official Gene Symbols From Full Length Protein Names Automatically
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Automate High-Volume Sequence Annotation And Genbank Submission
Epic Question 11 weeks ago, created a question with more than 10,000 views. For Correct Way To Parse A Fasta File In Python
Great Question 11 weeks ago, created a question with more than 5,000 views. For Snp Detection And Genotyping In Ngs (Next Generation Sequencing)
Prophet 3 months ago, created a post with more than 20 followers. For Correct Way To Parse A Fasta File In Python
Prophet 3 months ago, created a post with more than 20 followers. For Correct Way To Parse A Fasta File In Python
Librarian 4 months ago, created a post with more than 10 bookmarks. For Where To Look For Quality Bioinformatics Short Courses And Workshops?
Popular Question 4 months ago, created a question with more than 1,000 views. For Automate High-Volume Sequence Annotation And Genbank Submission
Appreciated 5 months ago, created a post with more than 5 votes. For A: Python 2 Vs Python 3 In Bioinformatics
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Python 2 Vs Python 3 In Bioinformatics
Student 7 months ago, asked a question with at least 3 up-votes. For Automate High-Volume Sequence Annotation And Genbank Submission
Great Question 7 months ago, created a question with more than 5,000 views. For Code Golf: Mean Length Of Fasta Sequences
Great Question 7 months ago, created a question with more than 5,000 views. For Snp Detection And Genotyping In Ngs (Next Generation Sequencing)
Popular Question 7 months ago, created a question with more than 1,000 views. For Automate High-Volume Sequence Annotation And Genbank Submission
Good Question 8 months ago, asked a question that was upvoted at least 5 times. For Post Your Prefered Bioinformatics Short Code
Pundit 8 months ago, created a comment with more than 10 votes. For C: Multiline Fasta To Single Line Fasta
Popular Question 9 months ago, created a question with more than 1,000 views. For Automate High-Volume Sequence Annotation And Genbank Submission
Commentator 9 months ago, created a comment with at least 3 up-votes. For C: Biology Introduction For A Computer Scientist
Popular Question 10 months ago, created a question with more than 1,000 views. For Automate High-Volume Sequence Annotation And Genbank Submission
Great Question 10 months ago, created a question with more than 5,000 views. For Code Golf: Mean Length Of Fasta Sequences
Student 10 months ago, asked a question with at least 3 up-votes. For Automate High-Volume Sequence Annotation And Genbank Submission
Great Question 11 months ago, created a question with more than 5,000 views. For How To Ask Good Questions On Technical And Scientific Forums
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: Biology Introduction For A Computer Scientist

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