Moderator: Eric Normandeau

gravatar for Eric Normandeau
Reputation:
10,300
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Location:
Quebec, Canada
Website:
http://github.com/enor...
Last seen:
1 week, 6 days ago
Joined:
9 years, 3 months ago
Email:
e**************@hotmail.com
  • Biologist turned bioinformatician, fluent in Python, R, and bash, now learning Rust for fun

  • I have worked with microarrays, qRT-PCR and am currently mainly working with RADseq / GBS, and eDNA.

  • If you are new to Biostars, you can read the following: How to ask Good Questions on Technical and Scientific Forums

Posts by Eric Normandeau

<prev • 667 results • page 1 of 67 • next >
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Comment: C: Correct Way To Parse A Fasta File In Python
... It is indeed wrong today. I edited the answer since it has been possible to use `str(sequence)` for a long time now. ...
written 4 months ago by Eric Normandeau10k
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Answer: A: scRNA-seq data analysis Workshop in Berlin
... I highly encourage people to look for Physalia courses on subjects that interest them. I have personally attended the Assembly of Genomes course in Berlin, which was excellent, and we are currently hosting two Physalia courses in Canada (a first!) on Population Genomics and eDNA Metabarcoding. ...
written 8 months ago by Eric Normandeau10k
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Comment: C: Where To Look For Quality Bioinformatics Short Courses And Workshops?
... The Assembly and Annotation of Genomes course was great. Thanks again for the knowledge we gained from your course. ...
written 14 months ago by Eric Normandeau10k
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Comment: C: Polishing PacBio assembly : The ideal coverage for higly polymorphic species
... Hi Roxanne. Thanks for the good info! What tool(s) did you use for polishing? Pilon? ...
written 16 months ago by Eric Normandeau10k
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Comment: C: Longer scaffolds from multiple eukaryote genome assemblies
... So basically treat contigs and scaffolds as long reads? That would mean VERY low coverage, on the order of 1 to 2. I'll explore this avenue but something tells me the assemblers are going to struggle with such a low coverage. ...
written 20 months ago by Eric Normandeau10k
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Comment: C: Longer scaffolds from multiple eukaryote genome assemblies
... Thanks. PBJelly has already been run on the PacBio assembly using the 10X reads but I never heard of OPERA-LG. I'll check it out. ...
written 20 months ago by Eric Normandeau10k
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Comment: C: Longer scaffolds from multiple eukaryote genome assemblies
... The Omicstools list is where I found GARM and Camsa. I sifted through the list and kept a few that looked promising. These two are my best bet for now. The fly is diploid. The genomes were not assembled from a double haploid individual. ...
written 20 months ago by Eric Normandeau10k
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Comment: C: Longer scaffolds from multiple eukaryote genome assemblies
... Yes, I am looking at GARM. See my edit above. ...
written 20 months ago by Eric Normandeau10k
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Comment: C: Longer scaffolds from multiple eukaryote genome assemblies
... Is FALCON supposed to be able to merge different assemblies produces by different technologies? ...
written 20 months ago by Eric Normandeau10k
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Longer scaffolds from multiple eukaryote genome assemblies
... I have two fly genomes from a species for which there are no other genomes available. One genome has been assembled from PacBio reads (N50=~400,000bp) and one from 10X (N50=~250,000bp). The genome is about 250-300Gb long. I would like to use the scaffolds from both these genomes to create an assemb ...
genome scaffolding written 20 months ago by Eric Normandeau10k • updated 17 months ago by harishk020170

Latest awards to Eric Normandeau

Popular Question 4 months ago, created a question with more than 1,000 views. For Asking for opinions about Bioinformatics Data Skills book
Popular Question 4 months ago, created a question with more than 1,000 views. For Where is it possible to submit annotated eukaryote genomes?
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Great Question 4 months ago, created a question with more than 5,000 views. For Snp Detection And Genotyping In Ngs (Next Generation Sequencing)
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Popular Question 10 months ago, created a question with more than 1,000 views. For Justifying Learning Linux For Bioinformatics
Epic Question 10 months ago, created a question with more than 10,000 views. For How To Ask Good Questions On Technical And Scientific Forums
Prophet 11 months ago, created a post with more than 20 followers. For How To Ask Good Questions On Technical And Scientific Forums
Commentator 13 months ago, created a comment with at least 3 up-votes. For C: Webbed Toes As Proof Of Parentage
Popular Question 13 months ago, created a question with more than 1,000 views. For Where is it possible to submit annotated eukaryote genomes?
Good Question 14 months ago, asked a question that was upvoted at least 5 times. For Post Your Prefered Bioinformatics Short Code
Popular Question 15 months ago, created a question with more than 1,000 views. For Where is it possible to submit annotated eukaryote genomes?
Popular Question 15 months ago, created a question with more than 1,000 views. For Where is it possible to submit annotated eukaryote genomes?
Good Question 15 months ago, asked a question that was upvoted at least 5 times. For Post Your Prefered Bioinformatics Short Code
Great Question 16 months ago, created a question with more than 5,000 views. For Figure Of Diminishing Sequencing Costs
Great Question 16 months ago, created a question with more than 5,000 views. For Reliable Fastq compression programs
Popular Question 16 months ago, created a question with more than 1,000 views. For Asking for opinions about Bioinformatics Data Skills book
Epic Question 17 months ago, created a question with more than 10,000 views. For How To Ask Good Questions On Technical And Scientific Forums
Popular Question 18 months ago, created a question with more than 1,000 views. For Asking for opinions about Bioinformatics Data Skills book
Popular Question 21 months ago, created a question with more than 1,000 views. For Asking for opinions about Bioinformatics Data Skills book
Good Question 21 months ago, asked a question that was upvoted at least 5 times. For Post Your Prefered Bioinformatics Short Code
Great Question 21 months ago, created a question with more than 5,000 views. For How To Ask Good Questions On Technical And Scientific Forums
Great Question 22 months ago, created a question with more than 5,000 views. For Correct Way To Parse A Fasta File In Python

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