User: TriS
TriS • 3.4k
- Reputation:
- 3,410
- Status:
- Trusted
- Location:
- United States, Buffalo
- Last seen:
- 2 days, 19 hours ago
- Joined:
- 3 years, 11 months ago
- Email:
- s*******@gmail.com
Posts by TriS
<prev
• 329 results •
page 1 of 33 •
next >
2
votes
37
answers
39k
views
37
answers
... this code is a guideline, not a copy and paste document. I'd suggest you to read a bit more about basic R usage and survival analysis before digging into this. it'll be time well spent ...
written 6 months ago by
TriS • 3.4k
0
votes
37
answers
39k
views
37
answers
... you have to group patients using the parameters you chose (i.e. groups) instead of gene expression altered/not altered.
I'd suggest you to read a bit more about basic survival analysis and how it works before digging into this one ...
written 6 months ago by
TriS • 3.4k
1
vote
1
answer
521
views
1
answers
... this might help:
https://www.hindawi.com/journals/abi/2017/1278932/
...
written 8 months ago by
TriS • 3.4k
0
votes
2
answers
646
views
2
answers
Comment:
C: PCA Tools to analyse RNA-seq data
... the linked version is a web-based application. the desktop application is a standalone java-based version ...
written 8 months ago by
TriS • 3.4k
0
votes
1
answer
2.3k
views
1
answers
... as comment to DAVID, it has been updated to the [6.8 version][1] on Oct 2016
[1]: https://david.ncifcrf.gov/ ...
written 8 months ago by
TriS • 3.4k
2
votes
0
answers
385
views
0
answers
... affinity is a different thing that abundance.
if you look at the wiggle/bigbed files for your ChiSeq you can check "how much" binding you have. however, none of this will tell you the "strength" of binding. you need wet lab experiments mutating the binding site to determine that. ...
written 8 months ago by
TriS • 3.4k
1
vote
2
answers
646
views
2
answers
... MeV is a good start
http://mev.tm4.org/#/welcome
...
written 8 months ago by
TriS • 3.4k
0
votes
37
answers
39k
views
37
answers
... looks like you don't have a columns called
patient.bcr_patient_barcode
or it's empty, therefore you can't assign it to the variable you are creating.
...
written 10 months ago by
TriS • 3.4k
1
vote
37
answers
39k
views
37
answers
... check
class(clinical)
if it's a matrix, transform it into a data.frame ...
written 10 months ago by
TriS • 3.4k
1
vote
1
answer
445
views
1
answers
... for DE transcripts keep the biological replicates separated, align them separately and then calculate DETs/DEGs.
for SNPs I'd suggest to do a similar approach. call SNPs per each replicate and keep those common across biological replicates. ...
written 11 months ago by
TriS • 3.4k
Latest awards to TriS
Appreciated
25 days ago,
created a post with more than 5 votes.
For A: How to check whether two genomic regions contact in 3D?
Popular Question
4 weeks ago,
created a question with more than 1,000 views.
For breakdancer - cfg creation and chi square problem
Popular Question
10 weeks ago,
created a question with more than 1,000 views.
For breakdancer - cfg creation and chi square problem
Popular Question
12 weeks ago,
created a question with more than 1,000 views.
For breakdancer - cfg creation and chi square problem
Popular Question
3 months ago,
created a question with more than 1,000 views.
For breakdancer - cfg creation and chi square problem
Popular Question
7 months ago,
created a question with more than 1,000 views.
For filtering pileup file with samtools for SomaticSniper
Scholar
10 months ago,
created an answer that has been accepted.
For C: limma results topTable vs toptable differ
Teacher
10 months ago,
created an answer with at least 3 up-votes.
For A: How to split gene names in my list?
Scholar
12 months ago,
created an answer that has been accepted.
For C: limma results topTable vs toptable differ
Teacher
12 months ago,
created an answer with at least 3 up-votes.
For A: How to split gene names in my list?
Teacher
13 months ago,
created an answer with at least 3 up-votes.
For A: How to split gene names in my list?
Scholar
13 months ago,
created an answer that has been accepted.
For C: limma results topTable vs toptable differ
Popular Question
13 months ago,
created a question with more than 1,000 views.
For pros- and cons- : programming skills vs. GUI
Popular Question
14 months ago,
created a question with more than 1,000 views.
For pros- and cons- : programming skills vs. GUI
Scholar
15 months ago,
created an answer that has been accepted.
For C: limma results topTable vs toptable differ
Popular Question
15 months ago,
created a question with more than 1,000 views.
For pros- and cons- : programming skills vs. GUI
Good Answer
16 months ago,
created an answer that was upvoted at least 5 times.
For A: How to check whether two genomic regions contact in 3D?
Popular Question
16 months ago,
created a question with more than 1,000 views.
For pros- and cons- : programming skills vs. GUI
Good Answer
17 months ago,
created an answer that was upvoted at least 5 times.
For A: How to check whether two genomic regions contact in 3D?
Appreciated
19 months ago,
created a post with more than 5 votes.
For A: How to check whether two genomic regions contact in 3D?
Appreciated
19 months ago,
created a post with more than 5 votes.
For A: How to check whether two genomic regions contact in 3D?
Teacher
20 months ago,
created an answer with at least 3 up-votes.
For A: How to split gene names in my list?
Scholar
20 months ago,
created an answer that has been accepted.
For C: limma results topTable vs toptable differ
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1861 users visited in the last hour