Moderator: Asaf
Asaf ♦ 4.9k
- Reputation:
- 4,860
- Status:
- Trusted
- Location:
- Israel
- Scholar ID:
- Google Scholar Page
- Last seen:
- 1 week ago
- Joined:
- 7 years, 4 months ago
- Email:
- a*****@gmail.com
Posts by Asaf
<prev
• 580 results •
page 1 of 58 •
next >
0
votes
0
answers
158
views
0
answers
Comment:
C: Adapter Removal - Nextera LIbrary
... You can use cutadapt with multiple -a and -A flags ...
written 8 weeks ago by
Asaf ♦ 4.9k
0
votes
2
answers
426
views
2
answers
... I don't think you need to select at all. Are your sRNAs from human or bacteria? If from bacteria then they should be long (up to ~150 nt) ...
written 6 months ago by
Asaf ♦ 4.9k
0
votes
1
answer
232
views
1
answers
... I think you can BLAST them against nr and see where they came from, you should get 100% identity ...
written 6 months ago by
Asaf ♦ 4.9k
3
votes
1
answer
346
views
1
answers
... I think it's now integrated into spades, use -plasmid flag ...
written 6 months ago by
Asaf ♦ 4.9k
0
votes
1
answer
580
views
1
answers
Comment:
C: Mothur alignment issues
... OK, you have 213k sequences which is fine.
Can you print the command line you used? ...
written 6 months ago by
Asaf ♦ 4.9k
0
votes
0
answers
445
views
0
answers
... I think you're missing a new-line at the end of the GTF file ...
written 6 months ago by
Asaf ♦ 4.9k
0
votes
1
answer
580
views
1
answers
Comment:
C: Mothur alignment issues
... Your query sequence is 213k long? ...
written 6 months ago by
Asaf ♦ 4.9k
0
votes
1
answer
543
views
1
answers
... What is the assembly quality? Why do you need scaffolds? ...
written 7 months ago by
Asaf ♦ 4.9k
0
votes
1
answer
238
views
1
answers
... From my limited knowledge in NNs I think that you shouldn't represent 3D structures using features. The great benefit of NNs is that the machine can generate features. I think that you would want to have the angles between AAs as input and the AAs themselves so you'll have 20+ dimension vector. You ...
written 7 months ago by
Asaf ♦ 4.9k
0
votes
0
answers
268
views
0
answers
... I did it some long time ago with Vienna package. They have a script to paint RNA structure according to some measure, I changed the script to read custom input. ...
written 7 months ago by
Asaf ♦ 4.9k
Latest awards to Asaf
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Transcription Network With Edges Type
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Good Example Sequence For Psi-Blast
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: How To Mark Specific Species On The Tree Of Life?
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Help With Nussinov'S Rna Folding Algorithm
Popular Question
6 months ago,
created a question with more than 1,000 views.
For Transcription Network With Edges Type
Scholar
6 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Scholar
6 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Teacher
7 months ago,
created an answer with at least 3 up-votes.
For A: How To Mark Specific Species On The Tree Of Life?
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Transcription Network With Edges Type
Scholar
9 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Scholar
10 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Teacher
10 months ago,
created an answer with at least 3 up-votes.
For A: How To Mark Specific Species On The Tree Of Life?
Scholar
10 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Commentator
12 months ago,
created a comment with at least 3 up-votes.
For C: What to do after an genome assembly?
Teacher
12 months ago,
created an answer with at least 3 up-votes.
For A: How To Mark Specific Species On The Tree Of Life?
Scholar
13 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Appreciated
16 months ago,
created a post with more than 5 votes.
For A: How To Mark Specific Species On The Tree Of Life?
Teacher
16 months ago,
created an answer with at least 3 up-votes.
For A: How To Mark Specific Species On The Tree Of Life?
Commentator
17 months ago,
created a comment with at least 3 up-votes.
For C: What to do after an genome assembly?
Teacher
17 months ago,
created an answer with at least 3 up-votes.
For A: How To Mark Specific Species On The Tree Of Life?
Popular Question
17 months ago,
created a question with more than 1,000 views.
For Getting transcripts from BAM file with gene names
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Getting transcripts from BAM file with gene names
Scholar
19 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Teacher
19 months ago,
created an answer with at least 3 up-votes.
For A: How To Mark Specific Species On The Tree Of Life?
Popular Question
22 months ago,
created a question with more than 1,000 views.
For Counting reads for gene in bacterial genomes
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1666 users visited in the last hour