Moderator: Asaf
Asaf ♦ 6.1k
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Posts by Asaf
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Comment:
C: including batch in design~
... The name of the batch (like sequencing lane ID for instance) each library was prepared and sequenced in ...
written 2 minutes ago by
Asaf ♦ 6.1k
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Comment:
C: including batch in design~
... `batch` should a=be a column in the `samples` data.frame you provided ...
written 9 hours ago by
Asaf ♦ 6.1k
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... How many dimensions of the PCA are you using for clustering? ...
written 7 days ago by
Asaf ♦ 6.1k
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... I don't know, you might want to find someone that established such an infrastructure lately. Do you have any support from your institute? A computer cluster, a backup system, most institutions have some of those things. You might want to reach out to the CS department if you have such or ask around ...
written 7 days ago by
Asaf ♦ 6.1k
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... It's not just storage capacity, it's also its speed. ...
written 7 days ago by
Asaf ♦ 6.1k
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... My guess is that the multiple hypotheses correction is different, probably interproscan scans more profiles and has a more profound correction. Can you validate the correspondence between the e-values? Are you loosing the high e-value results? ...
written 13 days ago by
Asaf ♦ 6.1k
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... I would start by cleaning the data using a procedure like in here: https://kbroman.org/qtl2/assets/vignettes/do_diagnostics.html especially the "Array intensity" part. To even better make the data comparable I would select an unrelated evenly spaced list of markers which is in a bit of lower resolut ...
written 18 days ago by
Asaf ♦ 6.1k
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... > i have removed all SNP`s which have p < 0.05 when one platform is used
> as case and the other one as control
So you remove all the peaks? ...
written 18 days ago by
Asaf ♦ 6.1k
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... BAM file shouldn't contain gene ids just chromosomes and positions. The genes (or features) are defined in the gff file ...
written 20 days ago by
Asaf ♦ 6.1k
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... It's pretty straightforward, map the fastq files to the genome, run htseq-count and analyze only the features (genes?) of interest. ...
written 20 days ago by
Asaf ♦ 6.1k
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7 days ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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4 weeks ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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5 weeks ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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11 weeks ago,
created a comment with at least 3 up-votes.
For C: Normalization in RNA-seq
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3 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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3 months ago,
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For A: How To Mark Specific Species On The Tree Of Life?
Scholar
3 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Scholar
3 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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4 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Teacher
5 months ago,
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For A: How To Mark Specific Species On The Tree Of Life?
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5 months ago,
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For C: What to do after an genome assembly?
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5 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
Teacher
8 months ago,
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For A: How To Mark Specific Species On The Tree Of Life?
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10 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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16 months ago,
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For A: How To Mark Specific Species On The Tree Of Life?
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16 months ago,
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For A: Help With Nussinov'S Rna Folding Algorithm
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16 months ago,
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For A: Good Example Sequence For Psi-Blast
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16 months ago,
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Scholar
16 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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17 months ago,
created an answer that has been accepted.
For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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17 months ago,
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For A: How To Mark Specific Species On The Tree Of Life?
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19 months ago,
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Scholar
19 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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20 months ago,
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For A: What are the "Coding", "Maximal" and "Two templates" options for megablast?
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