Moderator: Medhat

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Medhat8.7k
Reputation:
8,650
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Trusted
Location:
Texas
Website:
http://combio.pl/
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Google Scholar Page
Last seen:
11 minutes ago
Joined:
7 years, 6 months ago
Email:
m*************@gmail.com

 Computational biology PhD, Software engineer. love programming using Java, Python and R. Thrive on challenges and live for breakthroughs (and coffee). working on  data analysis,genome assembly and comparative analysis.  also interested in evolution and mutations and phylogenetics.  Where others say “that’s impossible”,I say “when do I start?” (usually after a cup of coffee).

Posts by Medhat

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Comment: C: Pan-Structural Variation hackathon in the Cloud!
... Thanks, hope that you can join us, it will be a lot of work and fun. ...
written 3 months ago by Medhat8.7k
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Comment: C: Pan-Structural Variation hackathon in the Cloud!
... Thanks a lot for letting me know, highly appreciate that :). `Structural Variant Crying Club` no typo it is right!! :D ...
written 3 months ago by Medhat8.7k
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News: Pan-Structural Variation hackathon in the Cloud!
... **Everything is bigger in Texas: Pan-Structural Variation hackathon in the Cloud!** The “Structural Variant Crying Club” is pleased to announce the next round of Structural Variants in the Cloud Hackathon teaming up with Pangenomes! - Precision medicine - Incorporation of population data to a r ...
sv forum news sequencing written 3 months ago by Medhat8.7k
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Comment: C: PostDoc position at Human Genome Sequencing Center @ Baylor College of Medicine,
... Hi! I urge you to apply ASAP ...
written 4 months ago by Medhat8.7k
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Comment: C: Collaboration for phd thesis
... However, people need to understand exactly what you/your lab did before, maybe share your GitHub?! or anything that shows your programming ability, and what tools/software you did before, also share research papers from your lab, which will give others chances to see how can they establish cooperati ...
written 4 months ago by Medhat8.7k
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Comment: C: Tools for metagenomics classification using long reads
... Please keep us updated wih your benchmark, and if it give some ouput that could be represented in Krona tools? ...
written 4 months ago by Medhat8.7k
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Job: PostDoc position at Human Genome Sequencing Center @ Baylor College of Medicine, Houston, TX, USA
... PostDoc opportunity to work with **Fritz J Sedlazeck** https://fritzsedlazeck.github.io/ Title: Postdoctoral Associate Division: Human Genome Sequencing Center Schedule: Monday-Friday; 8:00am-5:00pm Work Location: Baylor Main Campus, Houston, TX Salary Range: $50,004 FLSA Status: ...
postdoc job bioinformatics written 5 months ago by Medhat8.7k • updated 4 months ago by Buffo1.8k
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Comment: C: looking for internship in Machine Learning (Deep learning ), Bioinformatics, Dat
... https://www.training.vbc.ac.at/summer-school/ https://www.ebi.ac.uk/research/trainees https://summerofcode.withgoogle.com/ ...
written 5 months ago by Medhat8.7k
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Comment: C: BIO_CYCLE Missing Value
... > However, I keep getting an error using BIO_CYCLE Please add the error so people can understand what is actually happening. ...
written 6 months ago by Medhat8.7k
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Comment: C: How to extract reads that support the structural variants using the vcf file and
... Do you have the reads names that support the SV? If so you can grep them. `samtools view my.bam | grep -f reads_name.txt > supporting_reads.sam` More efficient way is to use `picard FilterSamReads` ...
written 6 months ago by Medhat8.7k

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