User: Medhat

gravatar for Medhat
Medhat7.3k
Reputation:
7,330
Status:
Trusted
Location:
Poland
Website:
http://combio.pl/
Scholar ID:
Google Scholar Page
Last seen:
11 hours ago
Joined:
5 years, 2 months ago
Email:
m*************@gmail.com

 Computational biology PhD candidate (searching for Postdoc :) ), Software engineer. love programming using Java, Python and R. thrive on challenges and live for breakthroughs (and coffee). working on  data analysis,genome assembly and comparative analysis.  also interested in evolution and mutations and phylogenetics.  Where others say “that’s impossible”,I say “when do I start?” (usually after a cup of coffee).

Posts by Medhat

<prev • 815 results • page 1 of 82 • next >
1
vote
0
answers
109
views
0
answers
Comment: C: hisat2 run error
... Try to post also the command you used to run hisat. There is a similar error like that referring to naming issue in reference here https://www.biostars.org/p/256803/ I suggest you may just need to re-index your reference ...
written 2 days ago by Medhat7.3k
0
votes
3
answers
275
views
3
answers
Comment: C: Difference between genomes in circular graph
... It is not free though. ...
written 5 days ago by Medhat7.3k
0
votes
0
answers
30
views
0
answers
Comment: C: for lp in range(100): if guess == number: break if guess < numbe
... You can delete your own question by pressing the word moderate (under your question) then choose delete. ...
written 5 days ago by Medhat7.3k
0
votes
4
answers
183
views
4
answers
Comment: C: visualize CNV data based on WGS
... This is what I mean, My bad :) ...
written 6 days ago by Medhat7.3k
0
votes
4
answers
183
views
4
answers
Comment: C: visualize CNV data based on WGS
... It would be great If you could implement method to go directly to specific region in genome. ...
written 6 days ago by Medhat7.3k
1
vote
4
answers
183
views
4
answers
Comment: C: visualize CNV data based on WGS
... Did you tried using terminal genome viewer like https://github.com/dariober/ASCIIGenome maybe it will help. ...
written 6 days ago by Medhat7.3k
0
votes
1
answer
115
views
1
answers
Comment: C: Bash: awk: Calculate average of first 10 rows in column?
... If you are using Linux you should read `head -h`. `head -n 10 your_input` ...
written 15 days ago by Medhat7.3k
0
votes
1
answer
169
views
1
answers
Comment: C: GATK Unified Genotyper
... First: Regarding the error please follow this thread: https://gatkforums.broadinstitute.org/gatk/discussion/10004/realignertargetcreator-hangs which suggest some error in the build. why Haplotypecaller?! > The HaplotypeCaller is a more recent and sophisticated tool than the > Unified ...
written 15 days ago by Medhat7.3k
1
vote
1
answer
169
views
1
answers
Comment: C: GATK Unified Genotyper
... May I ask why you did not use GATK haplotypecaller? ---------- I see only one error in logging `ERROR StatusLogger Unable to create class org.apache.logging.log4j.core.impl.Log4jContextFactory` and the rest looks normal to me ...
written 17 days ago by Medhat7.3k
0
votes
3
answers
179
views
3
answers
Answer: A: finding mutation from RNA seq data
... here there is a list of tools https://omictools.com/variant-detection2-category from those I suggest GATK or samtools a nice review to compare different tools [Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations](https://academic.oup ...
written 25 days ago by Medhat7.3k

Latest awards to Medhat

Popular Question 24 days ago, created a question with more than 1,000 views. For How to search Pfam DB using list of accessions
Good Answer 6 weeks ago, created an answer that was upvoted at least 5 times. For A: PhD in bioinformatics or biostatistics as a wet-lab scientist?
Appreciated 7 weeks ago, created a post with more than 5 votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: How to find research teams regarding your field
Scholar 8 weeks ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Good Answer 9 weeks ago, created an answer that was upvoted at least 5 times. For A: Preferred Tools For Making Analysis Pipeline Flowchart ?
Popular Question 3 months ago, created a question with more than 1,000 views. For How to search Pfam DB using list of accessions
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Scholar 3 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Popular Question 5 months ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Appreciated 5 months ago, created a post with more than 5 votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Appreciated 6 months ago, created a post with more than 5 votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Appreciated 7 months ago, created a post with more than 5 votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Scholar 7 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
Scholar 7 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Great Question 7 months ago, created a question with more than 5,000 views. For What tools you use or know for PacBio Long Read error correction?
Popular Question 8 months ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Popular Question 9 months ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Appreciated 10 months ago, created a post with more than 5 votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Scholar 10 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
Popular Question 10 months ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Popular Question 10 months ago, created a question with more than 1,000 views. For Interactive Web To Learn R

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1437 users visited in the last hour