Moderator: Medhat

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Medhat8.8k
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Location:
Texas
Website:
http://combio.pl/
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Last seen:
13 hours ago
Joined:
8 years ago
Email:
m*************@gmail.com

 Computational biology Ph.D., Software engineer. love programming using Java, Python, and R. Thrive on challenges and live for breakthroughs (and coffee). working on data analysis, genome assembly, and comparative analysis.  also interested in evolution and mutations and phylogenetics.  Where others say “that’s impossible”, I say “when do I start?” (usually after a cup of coffee).

Posts by Medhat

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Comment: C: how to change header of fasta file
... This will give you a hint. https://www.biostars.org/p/53212/#53219 ...
written 5 weeks ago by Medhat8.8k
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Comment: C: Kraken2 Error in buildind NCBI bacterial database
... Right, it looks like @shaminur has an old version, thanks https://www.biostars.org/u/18998/. ...
written 6 weeks ago by Medhat8.8k
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Answer: C: Kraken2 Error in buildind NCBI bacterial database
... Similar issue here -> https://github.com/DerrickWood/kraken/issues/114#issuecomment-610912961. Maybe it will help. ...
written 6 weeks ago by Medhat8.8k
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Answer: A: bcftools error duplicate samples
... No problems will happen. Using `--force-samples` will prepend the index of the sample to its name in the merging file. As what happened in sample S3 below: > when merging file A.vcf.gz containing samples S1, S2 and S3 and file > B.vcf.gz containing samples S3 and S4, the output file will ...
written 8 weeks ago by Medhat8.8k
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Comment: C: Things you wish you knew when entering the bioinformatics field
... Ya, It is very old, definatly needs updates. ...
written 9 weeks ago by Medhat8.8k
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Comment: C: Things you wish you knew when entering the bioinformatics field
... Related: https://www.biostars.org/p/75925/ ...
written 9 weeks ago by Medhat8.8k
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Job: PostDoc position at Human Genome Sequencing Center @ Baylor College of Medicine, Houston, TX, USA
... PostDoc opportunity to work with **Fritz J Sedlazeck** https://scholar.google.com/citations?user=KNZTJ40AAAAJ&hl=en Title: Postdoctoral Associate Division: Human Genome Sequencing Center. Schedule: Monday - Friday, 8 am - 5 pm. Work Location: Baylor Main Campus, Houston, TX. Salary ...
bioinformatics metagenomics job postdoc written 10 weeks ago by Medhat8.8k
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Comment: C: Understanding VCF : 0/0 v 0/1 v 1/0 v 1/1 etc
... > ALT - alternate base(s): Comma separated list of alternate > non-reference alleles. **These alleles do not have to be called in any > of the samples**. Source: https://samtools.github.io/hts-specs/VCFv4.2.pdf ...
written 11 weeks ago by Medhat8.8k
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Comment: C: Convert fastqc.gz file to BED file format
... May I ask why you are doing that? (by the way, do you mean fastq.gz?). You can get something like: `Sequence_name\t0\tlength_of_read` ...
written 12 weeks ago by Medhat8.8k
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News: Pan-Structural Variation hackathon in the Cloud (Remote hackathon)
... ![enter image description here][1] The “**Structural Variant Crying Club**” is pleased to announce the next round of Structural Variants in the Cloud **Hackathon** teaming up with Pangenomes and COVID research! For the latter, we will work together with COV-IRT. The hackathon will be held **remote ...
news structural varaints sequencing written 3 months ago by Medhat8.8k

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