User: Medhat

gravatar for Medhat
Medhat6.3k
Reputation:
6,320
Status:
Trusted
Location:
Poland
Website:
http://combio.pl/
Scholar ID:
Google Scholar Page
Last seen:
9 hours ago
Joined:
4 years, 5 months ago
Email:
m*************@gmail.com

 Computational biology PhD student, Software engineer. love programming using Java, Python and R. thrive on challenges and live for breakthroughs (and coffee). working on  data analysis,genome assembly and comparative analysis.  also interested in virus evolution and mutations, phylogeny and reverse vaccines Where others say “that’s impossible”,I say “when do I start?” (usually after a cup of coffee).

Posts by Medhat

<prev • 667 results • page 1 of 67 • next >
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Comment: C: How can I redirect R's output from the console to a file
... If you are running this in some R environment I think `sink()` function will do that read [here][1] [1]: http://www.endmemo.com/program/R/sink.php ...
written 11 days ago by Medhat6.3k
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Comment: C: A hot topic in Bioinformatics 2017
... could be the future of long reads in disease diagnosis, having better assemblies to cover long repeats and other low complexity parts of genomes and finally correction of the errors in Long reads. ...
written 13 days ago by Medhat6.3k
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Comment: C: extract SNP, variants
... As said it is too much questions and not easy just to answer, you need to clarify each step, and each step has its own questions and answers: But as a start I would like you to have a look at [BcBio](https://bcbio-nextgen.readthedocs.io/en/latest/) ...
written 13 days ago by Medhat6.3k
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Comment: C: Extract mutations for a specific gene from a vcf file
... I think you can use ``` bedtools intersect``` [here]( http://bedtools.readthedocs.io/en/latest/content/tools/intersect.html) where the option ``` -a ``` would be a bed file for the coordinate of your interest gene and ``` -b ``` would be the vcf files ...
written 17 days ago by Medhat6.3k
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Comment: C: Divide each fasta sequence into fragments of 200 nucleotides
... https://www.biostars.org/p/205745/#205751 ...
written 21 days ago by Medhat6.3k
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Comment: C: Multiline Fasta To Single Line Fasta
... my bad I just saw it :) ...
written 23 days ago by Medhat6.3k
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Comment: C: Multiline Fasta To Single Line Fasta
... there will be an empty line at the beginning it should be removed like: ``` tail -n +2 filein.fa > fileout.fa ``` ...
written 23 days ago by Medhat6.3k
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Comment: C: Append two fasta sequences
... that is right my bad ...
written 25 days ago by Medhat6.3k
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Comment: C: How to Reduce Number of PUBMED hits
... follow this video: https://youtu.be/cw4Om6xSx1g?t=337 ...
written 26 days ago by Medhat6.3k
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Comment: C: how to cut the gz. file by chromosome
... I am not sure but you are missing the header? >Broken VCF header ...
written 26 days ago by Medhat6.3k

Latest awards to Medhat

Popular Question 23 days ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Appreciated 27 days ago, created a post with more than 5 votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Scholar 27 days ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Teacher 27 days ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Interactive Web To Learn R
Scholar 7 weeks ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Great Question 7 weeks ago, created a question with more than 5,000 views. For What tools you use or know for PacBio Long Read error correction?
Great Question 9 weeks ago, created a question with more than 5,000 views. For What tools you use or know for PacBio Long Read error correction?
Prophet 11 weeks ago, created a post with more than 20 followers. For Will Python Take The Place Of R?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
Scholar 3 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
Scholar 3 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
Appreciated 4 months ago, created a post with more than 5 votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Scholar 5 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Limit Upvotes Over A Certain Amount Of Hours
Scholar 5 months ago, created an answer that has been accepted. For A: How to find research teams regarding your field
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Big Data Approaches For Bioinformatics
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