Moderator: Medhat

gravatar for Medhat
Medhat8.5k
Reputation:
8,480
Status:
Trusted
Location:
Texas
Website:
http://combio.pl/
Scholar ID:
Google Scholar Page
Last seen:
16 hours ago
Joined:
6 years, 11 months ago
Email:
m*************@gmail.com

 Computational biology PhD, Software engineer. love programming using Java, Python and R. Thrive on challenges and live for breakthroughs (and coffee). working on  data analysis,genome assembly and comparative analysis.  also interested in evolution and mutations and phylogenetics.  Where others say “that’s impossible”,I say “when do I start?” (usually after a cup of coffee).

Posts by Medhat

<prev • 947 results • page 1 of 95 • next >
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Comment: C: ImportError: cannot import name zip_longest
... `create -n cnvkit python=python3.5 cnvkit` ...
written 1 day ago by Medhat8.5k
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Comment: C: ImportError: cannot import name zip_longest
... What is your `Python` version? I think this answer in [StackOverflow][1] may help So you can edit the line try: from itertools import zip_longest except ImportError: from itertools import izip_longest as zip_longest Instead of from itertools import zip_longest ...
written 2 days ago by Medhat8.5k
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Comment: C: question ablout seurat figure
... Maybe you would like to give a more meanigful title? ...
written 6 days ago by Medhat8.5k
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Comment: C: How to merge different BAM files?
... From google search: https://www.biostars.org/p/9864/ https://www.biostars.org/p/16242/ https://www.biostars.org/p/242077 https://www.biostars.org/p/307116/ ...
written 5 weeks ago by Medhat8.5k
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Comment: C: Postdoc in computational and experimental annotation of tRNA-related sequences
... This is a great opportunity! Andrzej is a great person and works on really interesting problems. ...
written 7 weeks ago by Medhat8.5k
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Comment: C: Bioinformatics Data Engineer
... Please add (city, state/province, and country) to the title as suggested before by https://www.biostars.org/u/8494/. ex: > Bioinformatics Data Engineer, Baylor Genetics, Houston, Texas USA. Good luck :), ...
written 11 weeks ago by Medhat8.5k
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Comment: C: Creating workflows with snakemake and conda
... Thanks, also there are new features that was added to Snakake like: - pipe - group - and checkpoints Maybe you would like to add them to the main tutorial. ...
written 3 months ago by Medhat8.5k
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Comment: C: Help with data from rna-seq
... Maybe you should change the question to **"Identifying genes from RNA-Seq fastq reads"** or something similar to have a more meaningful title. ...
written 3 months ago by Medhat8.5k
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Answer: A: MissingInputException in snakemake workflow
... Please change ` 'test/{unit.sample}-paired_reads', unit=units.itertuples()`. The variable for expand is named `unit.sample` but you are calling it `unit` It should be : ` 'test/{unit.sample}-paired_reads', unit.sample=units.itertuples()`. Also, the `wildcard` have a variable called `unit.sample` ...
written 3 months ago by Medhat8.5k
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Comment: C: MissingInputException in snakemake workflow
... My bad, It was not clear previously. ...
written 3 months ago by Medhat8.5k

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