Moderator: Medhat

gravatar for Medhat
Medhat8.7k
Reputation:
8,730
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Location:
Texas
Website:
http://combio.pl/
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Google Scholar Page
Last seen:
7 hours ago
Joined:
7 years, 10 months ago
Email:
m*************@gmail.com

 Computational biology Ph.D., Software engineer. love programming using Java, Python, and R. Thrive on challenges and live for breakthroughs (and coffee). working on data analysis, genome assembly, and comparative analysis.  also interested in evolution and mutations and phylogenetics.  Where others say “that’s impossible”, I say “when do I start?” (usually after a cup of coffee).

Posts by Medhat

<prev • 967 results • page 1 of 97 • next >
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Comment: C: Things you wish you knew when entering the bioinformatics field
... Ya, It is very old, definatly needs updates. ...
written 15 hours ago by Medhat8.7k
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Comment: C: Things you wish you knew when entering the bioinformatics field
... Related: https://www.biostars.org/p/75925/ ...
written 16 hours ago by Medhat8.7k
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Job: PostDoc position at Human Genome Sequencing Center @ Baylor College of Medicine, Houston, TX, USA
... PostDoc opportunity to work with **Fritz J Sedlazeck** https://scholar.google.com/citations?user=KNZTJ40AAAAJ&hl=en Title: Postdoctoral Associate Division: Human Genome Sequencing Center. Schedule: Monday - Friday, 8 am - 5 pm. Work Location: Baylor Main Campus, Houston, TX. Salary ...
bioinformatics metagenomics job postdoc written 4 days ago by Medhat8.7k
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Comment: C: Understanding VCF : 0/0 v 0/1 v 1/0 v 1/1 etc
... > ALT - alternate base(s): Comma separated list of alternate > non-reference alleles. **These alleles do not have to be called in any > of the samples**. Source: https://samtools.github.io/hts-specs/VCFv4.2.pdf ...
written 13 days ago by Medhat8.7k
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Comment: C: Convert fastqc.gz file to BED file format
... May I ask why you are doing that? (by the way, do you mean fastq.gz?). You can get something like: `Sequence_name\t0\tlength_of_read` ...
written 16 days ago by Medhat8.7k
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News: Pan-Structural Variation hackathon in the Cloud (Remote hackathon)
... ![enter image description here][1] The “**Structural Variant Crying Club**” is pleased to announce the next round of Structural Variants in the Cloud **Hackathon** teaming up with Pangenomes and COVID research! For the latter, we will work together with COV-IRT. The hackathon will be held **remote ...
news structural varaints sequencing written 24 days ago by Medhat8.7k
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Comment: C: python: find percentage of match between two sequences
... from Bio.Emboss.Applications import NeedleCommandline from Bio.Emboss.Applications import WaterCommandline For more please visit https://homolog.us/Biopython/api-reference.html ...
written 28 days ago by Medhat8.7k
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Comment: C: ORFs finding tools
... Also, please try to support us with the command parameters that you used. Make sure that you selected Bacteria when you run the program. ...
written 3 months ago by Medhat8.7k
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Comment: C: Pan-Structural Variation hackathon in the Cloud!
... Thanks, hope that you can join us, it will be a lot of work and fun. ...
written 7 months ago by Medhat8.7k
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Comment: C: Pan-Structural Variation hackathon in the Cloud!
... Thanks a lot for letting me know, highly appreciate that :). `Structural Variant Crying Club` no typo it is right!! :D ...
written 7 months ago by Medhat8.7k

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Great Question 3 months ago, created a question with more than 5,000 views. For What tools you use or know for PacBio Long Read error correction?
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