User: Deepak Tanwar

gravatar for Deepak Tanwar
Deepak Tanwar3.8k
Reputation:
3,800
Status:
Trusted
Location:
McGill University, Canada
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
12 hours ago
Joined:
2 years, 12 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a M.Sc. at McGill University, Montréal, Canada.

Posts by Deepak Tanwar

<prev • 153 results • page 1 of 16 • next >
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Comment: C: Co-expression network integration
... Put the code that you used for doing analysis and the step where you got error. ...
written 3 months ago by Deepak Tanwar3.8k
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Test files to test pipeline
... Hello everyone, I would like to create some small test fastq files and small reference genomes to test my pipeline. **What I have?** Few `bam` files. **What I want?** 1. Short `fastq` files from my `bam files`. 2. Short `reference genome` to align those `fastq` files. ...
chip-seq written 3 months ago by Deepak Tanwar3.8k
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Comment: C: Row label in heatmap
... Can you show the code and output you are getting? ...
written 6 months ago by Deepak Tanwar3.8k
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Comment: C: chipseq data analysis
... Which peak caller would you suggest @Devon? ...
written 7 months ago by Deepak Tanwar3.8k
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Comment: C: Bioinformatics courses, workshops or training
... Alright! got that! Thanks ...
written 7 months ago by Deepak Tanwar3.8k
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Comment: C: Bioinformatics courses, workshops or training
... Can you please point out some from the list? I have numbered all of them. I have attempted to have only free courses in the list, if you can point out, I will remove them. Thanks! ...
written 7 months ago by Deepak Tanwar3.8k
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Comment: C: NGS files shrinkage software: ALAPY Compressor, only fastq file so far =)
... Can you please also add [xz][1] to the comparison. `xz -9` or maybe only `xz -3`, as it takes less time. [1]: http://tukaani.org/xz/ ...
written 7 months ago by Deepak Tanwar3.8k
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Comment: C: What is the relationship between library size and normalization factor?
... Thank you [Santosh Anand](https://www.biostars.org/u/24747/) for your reply. I do understand what you wrote. But, what I intended to ask is, what does this mean? I understand that there is very good (linear) correlation among two variables and on variable can be predicted from other. What's Biologi ...
written 7 months ago by Deepak Tanwar3.8k
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What is the relationship between library size and normalization factor?
... I saw this plot ![doi.org/10.3389/fgene.2016.00164](http://www.frontiersin.org/files/Articles/203326/fgene-07-00164-HTML/image_m/fgene-07-00164-g001.jpg) [doi.org/10.3389/fgene.2016.00164](https://doi.org/10.3389/fgene.2016.00164) >Normalization factors for the fruit set RNA-Seq data dependi ...
normalization library size normalization factor written 7 months ago by Deepak Tanwar3.8k • updated 7 months ago by Santosh Anand3.0k
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How to Install SGE (Sun Grid Engine) on macOS Sierra?
... > This Question could be little offtrack. I am trying to install SGE on MacPro. This would be useful in scheduling NGS analysis. I have tried a lot: https://bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ http://sparsefile.blogspot.ca/2012/06/installing-open-grid-scheduler-aka-sun.html https ...
sge macos written 8 months ago by Deepak Tanwar3.8k

Latest awards to Deepak Tanwar

Appreciated 11 weeks ago, created a post with more than 5 votes. For A: GO term enrichment
Student 4 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Can someone tell me journal with 1 impactfactor with minimum charge around INR 6
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Mapping genome region to gene symbols in CNV files from TCGA
Appreciated 7 months ago, created a post with more than 5 votes. For A: GO term enrichment
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Appreciated 7 months ago, created a post with more than 5 votes. For Using markdown for two or more programming languages
Appreciated 7 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Interships in Bioinformatcs
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Student 7 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Great Question 10 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 12 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Good Answer 14 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 14 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Popular Question 15 months ago, created a question with more than 1,000 views. For What is the best way to do Pathway Analysis with R?
Popular Question 15 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Appreciated 20 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 23 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB

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