User: Deepak Tanwar

gravatar for Deepak Tanwar
Deepak Tanwar3.8k
Reputation:
3,840
Status:
Trusted
Location:
ETH Zürich, Switzerland
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
2 days, 13 hours ago
Joined:
3 years, 8 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a PhD. at ETH Zürich, Switzerland.

Posts by Deepak Tanwar

<prev • 153 results • page 1 of 16 • next >
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Comment: C: Co-expression network integration
... Put the code that you used for doing analysis and the step where you got error. ...
written 12 months ago by Deepak Tanwar3.8k
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Test files to test pipeline
... Hello everyone, I would like to create some small test fastq files and small reference genomes to test my pipeline. **What I have?** Few `bam` files. **What I want?** 1. Short `fastq` files from my `bam files`. 2. Short `reference genome` to align those `fastq` files. ...
chip-seq written 12 months ago by Deepak Tanwar3.8k
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Comment: C: Row label in heatmap
... Can you show the code and output you are getting? ...
written 15 months ago by Deepak Tanwar3.8k
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Comment: C: chipseq data analysis
... Which peak caller would you suggest @Devon? ...
written 15 months ago by Deepak Tanwar3.8k
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Comment: C: Bioinformatics courses, workshops or training
... Alright! got that! Thanks ...
written 15 months ago by Deepak Tanwar3.8k
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Comment: C: Bioinformatics courses, workshops or training
... Can you please point out some from the list? I have numbered all of them. I have attempted to have only free courses in the list, if you can point out, I will remove them. Thanks! ...
written 15 months ago by Deepak Tanwar3.8k
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Comment: C: NGS files shrinkage software: ALAPY Compressor, only fastq file so far =)
... Can you please also add [xz][1] to the comparison. `xz -9` or maybe only `xz -3`, as it takes less time. [1]: http://tukaani.org/xz/ ...
written 15 months ago by Deepak Tanwar3.8k
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Comment: C: What is the relationship between library size and normalization factor?
... Thank you [Santosh Anand](https://www.biostars.org/u/24747/) for your reply. I do understand what you wrote. But, what I intended to ask is, what does this mean? I understand that there is very good (linear) correlation among two variables and on variable can be predicted from other. What's Biologi ...
written 15 months ago by Deepak Tanwar3.8k
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5 follow
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What is the relationship between library size and normalization factor?
... I saw this plot ![doi.org/10.3389/fgene.2016.00164](http://www.frontiersin.org/files/Articles/203326/fgene-07-00164-HTML/image_m/fgene-07-00164-g001.jpg) [doi.org/10.3389/fgene.2016.00164](https://doi.org/10.3389/fgene.2016.00164) >Normalization factors for the fruit set RNA-Seq data dependi ...
normalization library size normalization factor written 15 months ago by Deepak Tanwar3.8k • updated 10 days ago by elie.maza0
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How to Install SGE (Sun Grid Engine) on macOS Sierra?
... > This Question could be little offtrack. I am trying to install SGE on MacPro. This would be useful in scheduling NGS analysis. I have tried a lot: https://bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ http://sparsefile.blogspot.ca/2012/06/installing-open-grid-scheduler-aka-sun.html https ...
sge macos written 16 months ago by Deepak Tanwar3.8k • updated 5 months ago by se3940

Latest awards to Deepak Tanwar

Popular Question 12 weeks ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Popular Question 4 months ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Great Question 7 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Appreciated 11 months ago, created a post with more than 5 votes. For A: GO term enrichment
Student 12 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Interships in Bioinformatcs
Appreciated 15 months ago, created a post with more than 5 votes. For Using markdown for two or more programming languages
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Appreciated 15 months ago, created a post with more than 5 votes. For A: GO term enrichment
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Student 15 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Mapping genome region to gene symbols in CNV files from TCGA
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: Can someone tell me journal with 1 impactfactor with minimum charge around INR 6
Appreciated 15 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Great Question 18 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Good Answer 20 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 21 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Good Answer 22 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 22 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Popular Question 23 months ago, created a question with more than 1,000 views. For What is the best way to do Pathway Analysis with R?
Popular Question 23 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training

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