User: Deepak Tanwar

gravatar for Deepak Tanwar
Deepak Tanwar3.9k
Reputation:
3,900
Status:
Trusted
Location:
ETH Zürich, Switzerland
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
1 day, 1 hour ago
Joined:
4 years ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a PhD. at ETH Zürich, Switzerland.

Posts by Deepak Tanwar

<prev • 154 results • page 1 of 16 • next >
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Query based on PMIDs
... Hello! I have a list of PMIDs and would like to query `GEOquery` and `SRAdb` to see if there is data submitted from these papers, and if submitted, I would like to download. As I haven't received any response on https://support.bioconductor.org/p/115547/, I am posting my question here. ...
geoquery sradb written 10 days ago by Deepak Tanwar3.9k • updated 10 days ago by Ahill1.3k
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Comment: C: Co-expression network integration
... Put the code that you used for doing analysis and the step where you got error. ...
written 16 months ago by Deepak Tanwar3.9k
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Test files to test pipeline
... Hello everyone, I would like to create some small test fastq files and small reference genomes to test my pipeline. **What I have?** Few `bam` files. **What I want?** 1. Short `fastq` files from my `bam files`. 2. Short `reference genome` to align those `fastq` files. ...
chip-seq written 16 months ago by Deepak Tanwar3.9k
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Comment: C: Row label in heatmap
... Can you show the code and output you are getting? ...
written 19 months ago by Deepak Tanwar3.9k
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Comment: C: chipseq data analysis
... Which peak caller would you suggest @Devon? ...
written 20 months ago by Deepak Tanwar3.9k
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Comment: C: Bioinformatics courses, workshops or training
... Alright! got that! Thanks ...
written 20 months ago by Deepak Tanwar3.9k
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Comment: C: Bioinformatics courses, workshops or training
... Can you please point out some from the list? I have numbered all of them. I have attempted to have only free courses in the list, if you can point out, I will remove them. Thanks! ...
written 20 months ago by Deepak Tanwar3.9k
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Comment: C: NGS files shrinkage software: ALAPY Compressor, only fastq file so far =)
... Can you please also add [xz][1] to the comparison. `xz -9` or maybe only `xz -3`, as it takes less time. [1]: http://tukaani.org/xz/ ...
written 20 months ago by Deepak Tanwar3.9k
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Comment: C: What is the relationship between library size and normalization factor?
... Thank you [Santosh Anand](https://www.biostars.org/u/24747/) for your reply. I do understand what you wrote. But, what I intended to ask is, what does this mean? I understand that there is very good (linear) correlation among two variables and on variable can be predicted from other. What's Biologi ...
written 20 months ago by Deepak Tanwar3.9k
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5 follow
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What is the relationship between library size and normalization factor?
... I saw this plot ![doi.org/10.3389/fgene.2016.00164](http://www.frontiersin.org/files/Articles/203326/fgene-07-00164-HTML/image_m/fgene-07-00164-g001.jpg) [doi.org/10.3389/fgene.2016.00164](https://doi.org/10.3389/fgene.2016.00164) >Normalization factors for the fruit set RNA-Seq data dependi ...
normalization library size normalization factor written 20 months ago by Deepak Tanwar3.9k • updated 5 months ago by elie.maza0

Latest awards to Deepak Tanwar

Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Interships in Bioinformatcs
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Epic Question 11 weeks ago, created a question with more than 10,000 views. For Bioinformatics courses, workshops or training
Popular Question 3 months ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Popular Question 4 months ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Popular Question 7 months ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Popular Question 8 months ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Great Question 12 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Appreciated 15 months ago, created a post with more than 5 votes. For A: GO term enrichment
Student 17 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Can someone tell me journal with 1 impactfactor with minimum charge around INR 6
Appreciated 20 months ago, created a post with more than 5 votes. For Using markdown for two or more programming languages
Appreciated 20 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Student 20 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Appreciated 20 months ago, created a post with more than 5 votes. For A: GO term enrichment
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Interships in Bioinformatcs
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Mapping genome region to gene symbols in CNV files from TCGA
Great Question 23 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Good Answer 2.0 years ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Good Answer 2.2 years ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB

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