User: Deepak Tanwar

gravatar for Deepak Tanwar
Deepak Tanwar3.9k
Reputation:
3,870
Status:
Trusted
Location:
ETH Zürich, Switzerland
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
17 hours ago
Joined:
3 years, 10 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a PhD. at ETH Zürich, Switzerland.

Posts by Deepak Tanwar

<prev • 153 results • page 1 of 16 • next >
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Comment: C: Co-expression network integration
... Put the code that you used for doing analysis and the step where you got error. ...
written 14 months ago by Deepak Tanwar3.9k
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Test files to test pipeline
... Hello everyone, I would like to create some small test fastq files and small reference genomes to test my pipeline. **What I have?** Few `bam` files. **What I want?** 1. Short `fastq` files from my `bam files`. 2. Short `reference genome` to align those `fastq` files. ...
chip-seq written 14 months ago by Deepak Tanwar3.9k
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Comment: C: Row label in heatmap
... Can you show the code and output you are getting? ...
written 17 months ago by Deepak Tanwar3.9k
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Comment: C: chipseq data analysis
... Which peak caller would you suggest @Devon? ...
written 18 months ago by Deepak Tanwar3.9k
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Comment: C: Bioinformatics courses, workshops or training
... Alright! got that! Thanks ...
written 18 months ago by Deepak Tanwar3.9k
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Comment: C: Bioinformatics courses, workshops or training
... Can you please point out some from the list? I have numbered all of them. I have attempted to have only free courses in the list, if you can point out, I will remove them. Thanks! ...
written 18 months ago by Deepak Tanwar3.9k
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Comment: C: NGS files shrinkage software: ALAPY Compressor, only fastq file so far =)
... Can you please also add [xz][1] to the comparison. `xz -9` or maybe only `xz -3`, as it takes less time. [1]: http://tukaani.org/xz/ ...
written 18 months ago by Deepak Tanwar3.9k
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Comment: C: What is the relationship between library size and normalization factor?
... Thank you [Santosh Anand](https://www.biostars.org/u/24747/) for your reply. I do understand what you wrote. But, what I intended to ask is, what does this mean? I understand that there is very good (linear) correlation among two variables and on variable can be predicted from other. What's Biologi ...
written 18 months ago by Deepak Tanwar3.9k
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5 follow
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What is the relationship between library size and normalization factor?
... I saw this plot ![doi.org/10.3389/fgene.2016.00164](http://www.frontiersin.org/files/Articles/203326/fgene-07-00164-HTML/image_m/fgene-07-00164-g001.jpg) [doi.org/10.3389/fgene.2016.00164](https://doi.org/10.3389/fgene.2016.00164) >Normalization factors for the fruit set RNA-Seq data dependi ...
normalization library size normalization factor written 18 months ago by Deepak Tanwar3.9k • updated 3 months ago by elie.maza0
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How to Install SGE (Sun Grid Engine) on macOS Sierra?
... > This Question could be little offtrack. I am trying to install SGE on MacPro. This would be useful in scheduling NGS analysis. I have tried a lot: https://bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ http://sparsefile.blogspot.ca/2012/06/installing-open-grid-scheduler-aka-sun.html https ...
sge macos written 19 months ago by Deepak Tanwar3.9k • updated 8 months ago by se3940

Latest awards to Deepak Tanwar

Epic Question 18 days ago, created a question with more than 10,000 views. For Bioinformatics courses, workshops or training
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Popular Question 5 months ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Popular Question 6 months ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Great Question 10 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Appreciated 13 months ago, created a post with more than 5 votes. For A: GO term enrichment
Student 15 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Commentator 18 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 18 months ago, created a comment with at least 3 up-votes. For C: Can someone tell me journal with 1 impactfactor with minimum charge around INR 6
Commentator 18 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Appreciated 18 months ago, created a post with more than 5 votes. For A: GO term enrichment
Appreciated 18 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Commentator 18 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Appreciated 18 months ago, created a post with more than 5 votes. For Using markdown for two or more programming languages
Student 18 months ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Mapping genome region to gene symbols in CNV files from TCGA
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Interships in Bioinformatcs
Commentator 18 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Great Question 21 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Good Answer 22 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 24 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Good Answer 2.1 years ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Popular Question 2.2 years ago, created a question with more than 1,000 views. For What is the best way to do Pathway Analysis with R?

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