User: Deepak Tanwar

gravatar for Deepak Tanwar
Deepak Tanwar3.3k
Reputation:
3,290
Status:
Trusted
Location:
McGill University, Canada
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
8 hours ago
Joined:
2 years, 4 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a M.Sc. at McGill University, Montréal, Canada.

Posts by Deepak Tanwar

<prev • 144 results • page 1 of 15 • next >
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How to Install SGE (Sun Grid Engine) on macOS Sierra?
... > This Question could be little offtrack. I am trying to install SGE on MacPro. This would be useful in scheduling NGS analysis. I have tried a lot: https://bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ http://sparsefile.blogspot.ca/2012/06/installing-open-grid-scheduler-aka-sun.html https ...
sge macos written 5 days ago by Deepak Tanwar3.3k
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Are Gene Ontologies hand curated?
... Are all [GO terms][1] manually curated or are they computationally curated or mixture of both? How about GO from [MSigDB][2] ? [1]: http://www.geneontology.org/ [2]: http://software.broadinstitute.org/gsea/msigdb/ ...
msigdb go written 7 days ago by Deepak Tanwar3.3k • updated 7 days ago by LLTommy770
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Answer: A: Good university or country to study masters in bioinformatics
... Depends on your personal interest, where you want to go and also the CGPA you obtain. You could probably like to look into M.Sc. programs in Germany, as they don't have any tuition fees. If you have CGPA of around 7.5, you could be a good candidate for [M.Sc. in Bioinformatics at Saarland][1] [ ...
written 18 days ago by Deepak Tanwar3.3k
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Comment: C: Adjusting Peak Calling For Broad Enrichment Of Histone Modifications.
... Can you please update the link to your perl script! ...
written 7 weeks ago by Deepak Tanwar3.3k
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Comment: C: How to transpose large amounts of datasets in excel
... Can you please paste your code and a snap of your output here? ...
written 3 months ago by Deepak Tanwar3.3k
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Comment: C: How to transpose large amounts of datasets in excel
... You can do as: ``` transpose <- data.frame(t(data)) ``` I am not sure what are you trying to convert (list to dataframe?) ...
written 3 months ago by Deepak Tanwar3.3k
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Comment: C: convert one column values into row values based on other row values
... **This is a programming question not a Bioinformatics one!** ...
written 3 months ago by Deepak Tanwar3.3k
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Comment: C: edgeR direction of expression and sign of Log Fold Changes
... My bad.. didn't read properly. ...
written 9 months ago by Deepak Tanwar3.3k
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Comment: C: Genomic Matrix data from TCGA need to be analysied for Differential gene express
... You can always have 2 options: 1. You normalized data (counts) with edgeR package. This you may have done it. 2. You normalize data (Upper Quartile Normalization) and then just calculate Differential Expression using edgeR. ...
written 9 months ago by Deepak Tanwar3.3k
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Comment: C: Analyzing Genomewide Association Study Data: A Tutorial Using Plink
... @Istvan Link to PLINK tutorial (pdf) is deprecated. Please update it. Thanks ...
written 9 months ago by Deepak Tanwar3.3k

Latest awards to Deepak Tanwar

Great Question 10 weeks ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 5 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Good Answer 6 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 6 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Popular Question 7 months ago, created a question with more than 1,000 views. For What is the best way to do Pathway Analysis with R?
Popular Question 7 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Appreciated 12 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 15 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Appreciated 20 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Scholar 20 months ago, created an answer that has been accepted. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Centurion 20 months ago, created 100 posts.
Scholar 20 months ago, created an answer that has been accepted. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Gold Standard 21 months ago, created a post with more than 25 bookmarks. For Bioinformatics courses, workshops or training
Popular Question 21 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Appreciated 21 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB

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