User: Deepak Tanwar

gravatar for Deepak Tanwar
Deepak Tanwar3.6k
Reputation:
3,630
Status:
Trusted
Location:
McGill University, Canada
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
3 hours ago
Joined:
2 years, 5 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a M.Sc. at McGill University, Montréal, Canada.

Posts by Deepak Tanwar

<prev • 150 results • page 1 of 15 • next >
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Comment: C: chipseq data analysis
... Which peak caller would you suggest @Devon? ...
written 12 days ago by Deepak Tanwar3.6k
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Comment: C: Bioinformatics courses, workshops or training
... Alright! got that! Thanks ...
written 13 days ago by Deepak Tanwar3.6k
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Comment: C: Bioinformatics courses, workshops or training
... Can you please point out some from the list? I have numbered all of them. I have attempted to have only free courses in the list, if you can point out, I will remove them. Thanks! ...
written 13 days ago by Deepak Tanwar3.6k
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Comment: C: NGS files shrinkage software: ALAPY Compressor, only fastq file so far =)
... Can you please also add [xz][1] to the comparison. `xz -9` or maybe only `xz -3`, as it takes less time. [1]: http://tukaani.org/xz/ ...
written 20 days ago by Deepak Tanwar3.6k
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Comment: C: What is the relationship between library size and normalization factor?
... Thank you [Santosh Anand](https://www.biostars.org/u/24747/) for your reply. I do understand what you wrote. But, what I intended to ask is, what does this mean? I understand that there is very good (linear) correlation among two variables and on variable can be predicted from other. What's Biologi ...
written 20 days ago by Deepak Tanwar3.6k
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What is the relationship between library size and normalization factor?
... I saw this plot ![doi.org/10.3389/fgene.2016.00164](http://www.frontiersin.org/files/Articles/203326/fgene-07-00164-HTML/image_m/fgene-07-00164-g001.jpg) [doi.org/10.3389/fgene.2016.00164](https://doi.org/10.3389/fgene.2016.00164) >Normalization factors for the fruit set RNA-Seq data dependi ...
normalization library size normalization factor written 20 days ago by Deepak Tanwar3.6k • updated 20 days ago by Santosh Anand1.5k
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7 follow
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How to Install SGE (Sun Grid Engine) on macOS Sierra?
... > This Question could be little offtrack. I am trying to install SGE on MacPro. This would be useful in scheduling NGS analysis. I have tried a lot: https://bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ http://sparsefile.blogspot.ca/2012/06/installing-open-grid-scheduler-aka-sun.html https ...
sge macos written 4 weeks ago by Deepak Tanwar3.6k
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Are Gene Ontologies hand curated?
... Are all [GO terms][1] manually curated or are they computationally curated or mixture of both? How about GO from [MSigDB][2] ? [1]: http://www.geneontology.org/ [2]: http://software.broadinstitute.org/gsea/msigdb/ ...
msigdb go written 5 weeks ago by Deepak Tanwar3.6k • updated 5 weeks ago by LLTommy810
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Answer: A: Good university or country to study masters in bioinformatics
... Depends on your personal interest, where you want to go and also the CGPA you obtain. You could probably like to look into M.Sc. programs in Germany, as they don't have any tuition fees. If you have CGPA of around 7.5, you could be a good candidate for [M.Sc. in Bioinformatics at Saarland][1] [ ...
written 6 weeks ago by Deepak Tanwar3.6k
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Comment: C: Adjusting Peak Calling For Broad Enrichment Of Histone Modifications.
... Can you please update the link to your perl script! ...
written 11 weeks ago by Deepak Tanwar3.6k

Latest awards to Deepak Tanwar

Commentator 15 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Appreciated 15 days ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 15 days ago, created an answer with at least 3 up-votes. For A: Mapping genome region to gene symbols in CNV files from TCGA
Commentator 15 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 15 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Appreciated 15 days ago, created a post with more than 5 votes. For Using markdown for two or more programming languages
Teacher 15 days ago, created an answer with at least 3 up-votes. For A: Interships in Bioinformatcs
Commentator 15 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Student 15 days ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Appreciated 15 days ago, created a post with more than 5 votes. For A: GO term enrichment
Great Question 3 months ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 6 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Good Answer 7 months ago, created an answer that was upvoted at least 5 times. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 7 months ago, created a question with more than 1,000 views. For Pathway and Network Analysis
Popular Question 8 months ago, created a question with more than 1,000 views. For What is the best way to do Pathway Analysis with R?
Popular Question 8 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Appreciated 13 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Popular Question 16 months ago, created a question with more than 1,000 views. For Bioinformatics courses, workshops or training
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Scholar 21 months ago, created an answer that has been accepted. For A: pathway analysis tools and KEGG gene sets from MSigDB
Appreciated 21 months ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: how i can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac

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