User: bhuwankhatri11

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Posts by bhuwankhatri11

<prev • 24 results • page 1 of 3 • next >
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Comment: C: Extracting genes from one file using coordinate from second file
... I am able to get chrZ but chromosomes chrW, chrM, LGE64 and LGE22C19W28_E50C23 are still missing. ...
written 4 weeks ago by bhuwankhatri1110
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Comment: C: Extracting genes from one file using coordinate from second file
... Thank you Alex for quick reply. I should say it worked partially because it is missing some genes list from chromosomes like chrZ, chrM, LGE64 and LGE22C19W28_E50C23. ...
written 4 weeks ago by bhuwankhatri1110
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Extracting genes from one file using coordinate from second file
... Hi Alex Reynolds, I am sorry to ask this question once again. Because I got some error from previous command line. My first file looks like: First.txt deletion chr10:1726501-1755000 28500 0.586226 9.73037E-05 715.754 0.00171548 3546.87 0.114216 1.17241 Second file looks like: ...
bash awk bedoops written 4 weeks ago by bhuwankhatri1110 • updated 4 weeks ago by Alex Reynolds22k
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Comment: C: Circos image for Copy Number Variation
... I had already tried this tutorial with my data but it did not work. May be I missed some tricks. If you have custom scripts, can you please share? Thanks. ...
written 7 weeks ago by bhuwankhatri1110
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Circos image for Copy Number Variation
... Hi, I am learning circos to make image for my CNV data, however I am not getting image that I wanted. Could any one please help me by sharing the circos.conf script to create circos image using CNV data? I will appreciate your help. Thank you! ...
circos image cnv written 7 weeks ago by bhuwankhatri1110 • updated 7 weeks ago by Samarth Kulshrestha100
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Comment: C: Compare between two columns of two different files and print common
... Hi Kevin, It worked! I am new to awk. Could you please explain how this code works? Thanks. ...
written 8 weeks ago by bhuwankhatri1110
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Comment: C: Compare between two columns of two different files and print common
... I tried matching $5 of file1 with $6 of file2, but it didn't work. awk 'NR==FNR{a[$5]=$1;next}a[$6]{print $0 "\t" a[$6]}' file1 file2 >outfile ...
written 8 weeks ago by bhuwankhatri1110
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Compare between two columns of two different files and print common
... Hi I have two files, File1 Chr1 NC_029516.1 19961 - LRRC16B Chr1 NC_029516.1 23408 - LOC107314597 Chr1 NC_029516.1 31174 + LOC107305688 Chr1 NC_029516.1 156107 - ACR Chr1 NC_029516.1 193750 + LOC107319936 Chr1 NC_029516.1 457876 + SHANK3 Chr1 NC_029516.1 549801 - DENND ...
awk bash written 8 weeks ago by bhuwankhatri1110 • updated 8 weeks ago by pfs170
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Comment: C: Extract gene lists using two files
... Thank You Alex Reynolds! I worked now. I appreciate your help. ...
written 8 weeks ago by bhuwankhatri1110
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Comment: A: Extract gene lists using two files
... I removed headers of both of the files using sed command: `sed '1d' file1.txt` File1 becomes like this: deletion chr10:742501-778500 36000 0.654632 5.86769E-05 4097.15 0.00078794 12578 0.0298329 1.30923 deletion chr10:1726501-1755000 28500 0. ...
written 8 weeks ago by bhuwankhatri1110

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