User: bhuwankhatri11

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Posts by bhuwankhatri11

<prev • 26 results • page 1 of 3 • next >
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Comment: C: How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding
... Thank you Alex. It worked! ...
written 4 months ago by bhuwankhatri1120
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How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
... Hi, I have two files: File1: chr1 73270408 73271242 XLOC_000129 chr1 83659841 83660368 XLOC_000153 chr1 163894423 163894714 XLOC_000257 chr1 55485657 55486215 XLOC_000374 chr1 155285623 155287724 XLOC_000553 chr1 155288475 155288592 XLOC_000553 chr1 155289366 155290 ...
bedtools bedops awk sed bash written 4 months ago by bhuwankhatri1120 • updated 4 months ago by Alex Reynolds24k
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Comment: C: Extracting genes from one file using coordinate from second file
... I am able to get chrZ but chromosomes chrW, chrM, LGE64 and LGE22C19W28_E50C23 are still missing. ...
written 8 months ago by bhuwankhatri1120
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Comment: C: Extracting genes from one file using coordinate from second file
... Thank you Alex for quick reply. I should say it worked partially because it is missing some genes list from chromosomes like chrZ, chrM, LGE64 and LGE22C19W28_E50C23. ...
written 8 months ago by bhuwankhatri1120
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Extracting genes from one file using coordinate from second file
... Hi Alex Reynolds, I am sorry to ask this question once again. Because I got some error from previous command line. My first file looks like: First.txt deletion chr10:1726501-1755000 28500 0.586226 9.73037E-05 715.754 0.00171548 3546.87 0.114216 1.17241 Second file looks like: ...
bash awk bedoops written 8 months ago by bhuwankhatri1120 • updated 8 months ago by Alex Reynolds24k
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Comment: C: Circos image for Copy Number Variation
... I had already tried this tutorial with my data but it did not work. May be I missed some tricks. If you have custom scripts, can you please share? Thanks. ...
written 8 months ago by bhuwankhatri1120
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Circos image for Copy Number Variation
... Hi, I am learning circos to make image for my CNV data, however I am not getting image that I wanted. Could any one please help me by sharing the circos.conf script to create circos image using CNV data? I will appreciate your help. Thank you! ...
circos image cnv written 8 months ago by bhuwankhatri1120 • updated 8 months ago by Samarth Kulshrestha140
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Comment: C: Compare between two columns of two different files and print common
... Hi Kevin, It worked! I am new to awk. Could you please explain how this code works? Thanks. ...
written 9 months ago by bhuwankhatri1120
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Comment: C: Compare between two columns of two different files and print common
... I tried matching $5 of file1 with $6 of file2, but it didn't work. awk 'NR==FNR{a[$5]=$1;next}a[$6]{print $0 "\t" a[$6]}' file1 file2 >outfile ...
written 9 months ago by bhuwankhatri1120
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Compare between two columns of two different files and print common
... Hi I have two files, File1 Chr1 NC_029516.1 19961 - LRRC16B Chr1 NC_029516.1 23408 - LOC107314597 Chr1 NC_029516.1 31174 + LOC107305688 Chr1 NC_029516.1 156107 - ACR Chr1 NC_029516.1 193750 + LOC107319936 Chr1 NC_029516.1 457876 + SHANK3 Chr1 NC_029516.1 549801 - DENND ...
awk bash written 9 months ago by bhuwankhatri1120 • updated 9 months ago by pfs250

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