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0
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227
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How to perform custom annotation using garfield_annotate_uk10k.sh script in GARFIELD tool?
awk R GWAS bash
7 months ago by bk11 ▴ 40
3
votes
8
replies
906
views
combine columns from multiple files
bash
updated 23 months ago by ▴ 90 • written 3.0 years ago by ▴ 40
1
vote
4
replies
1.5k
views
cvnkit: what is the problem here?
CNV NGS
updated 2.2 years ago by 20 • written 4.1 years ago by ▴ 40
2
votes
13
replies
1.2k
views
Extract gene lists using two files
Unix awk shell script
updated 2.4 years ago by 20 • written 4.0 years ago by ▴ 40
0
votes
0
replies
9.5k
views
Comment: C: Merging bed bim fam files from chromosome 1 to 22 at one time
2.8 years ago by bk11 ▴ 40
1
vote
3
replies
2.6k
views
Problem with newSCESet(countData=all.counts) function
single cell experiment single cell RNA seq
updated 2.8 years ago by 5.4k • written 2.8 years ago by ▴ 40
0
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0
replies
2.6k
views
Comment: C: Problem with newSCESet(countData=all.counts) function
2.8 years ago by bk11 ▴ 40
0
votes
0
replies
987
views
Comment: C: target gene selection for miRNA
2.8 years ago by bk11 ▴ 40
1
vote
10
replies
1.8k
views
bedtools complement error
bedtools
updated 2.9 years ago by 33k • written 2.9 years ago by ▴ 40
0
votes
1
reply
1.8k
views
Comment: C: bedtools complement error
2.9 years ago by bk11 ▴ 40
0
votes
2
replies
1.8k
views
Comment: C: bedtools complement error
2.9 years ago by bk11 ▴ 40
0
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1
reply
1.1k
views
Comment: C: How to identify RNA-seq mapped reads to reference genome but not identified by f
2.9 years ago by bk11 ▴ 40
0
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1
reply
1.1k
views
Comment: C: How to identify RNA-seq mapped reads to reference genome but not identified by f
2.9 years ago by bk11 ▴ 40
2
votes
6
replies
1.1k
views
How to identify RNA-seq mapped reads to reference genome but not identified by featurecounts of Subread package?
RNA-Seq featureCounts HISAT2
updated 2.9 years ago by ★ 3.7k • written 2.9 years ago by ▴ 40
5
votes
17
replies
1.7k
views
awk and sed in bash script and no output
bash sed awk
updated 2.9 years ago by 33k • written 2.9 years ago by ▴ 40
0
votes
1
reply
1.7k
views
Comment: C: awk and sed in bash script and no output
2.9 years ago by bk11 ▴ 40
0
votes
1
reply
1.7k
views
Comment: C: awk and sed in bash script and no output
2.9 years ago by bk11 ▴ 40
0
votes
0
replies
1.7k
views
Comment: C: awk and sed in bash script and no output
2.9 years ago by bk11 ▴ 40
0
votes
1
reply
1.7k
views
Comment: C: awk and sed in bash script and no output
2.9 years ago by bk11 ▴ 40
0
votes
1
reply
906
views
Comment: C: combine columns from multiple files
3.0 years ago by bk11 ▴ 40
0
votes
1
reply
748
views
Comment: C: Add text in somewhere middle of line using information from the same line in fil
updated 3.0 years ago by 34k • written 3.0 years ago by ▴ 40
1
vote
1
reply
748
views
Comment: C: Add text in somewhere middle of line using information from the same line in fil
3.0 years ago by bk11 ▴ 40
12
votes
12
replies
748
views
Add text in somewhere middle of line using information from the same line in file.
sed awk unix
updated 3.0 years ago by 19k • written 3.0 years ago by ▴ 40
0
votes
1
reply
748
views
Comment: C: Add text in somewhere middle of line using information from the same line in fil
3.0 years ago by bk11 ▴ 40
0
votes
1
reply
733
views
Comment: C: Heatmap using publicly available Chip-Seq data
3.0 years ago by bk11 ▴ 40
0
votes
1
reply
733
views
Comment: C: Heatmap using publicly available Chip-Seq data
3.0 years ago by bk11 ▴ 40
0
votes
5
replies
733
views
Heatmap using publicly available Chip-Seq data
ChIP-Seq heatmap bigBed bigWig Blueprint
3.0 years ago by bk11 ▴ 40
1
vote
3
replies
591
views
Calculating average using information from three different columns of a file.
Unix R Python
updated 3.1 years ago by 10k • written 3.1 years ago by ▴ 40
0
votes
1
reply
2.0k
views
Comment: C: Quantile Normalization in R and output data
3.1 years ago by bk11 ▴ 40
1
vote
3
replies
2.0k
views
Quantile Normalization in R and output data
R Data normalization
3.1 years ago by bk11 ▴ 40
0
votes
1
reply
12k
views
Comment: C: Quantile Normalization in R
3.1 years ago by bk11 ▴ 40
0
votes
0
replies
1.3k
views
Comment: C: How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding
3.6 years ago by bk11 ▴ 40
8
votes
3
replies
1.3k
views
How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedops bedtools awk sed bash
updated 3.6 years ago by 33k • written 3.6 years ago by ▴ 40
0
votes
1
reply
991
views
Comment: C: Extracting genes from one file using coordinate from second file
4.0 years ago by bk11 ▴ 40
0
votes
1
reply
991
views
Comment: C: Extracting genes from one file using coordinate from second file
4.0 years ago by bk11 ▴ 40
1
vote
5
replies
991
views
Extracting genes from one file using coordinate from second file
awk bash bedoops
updated 4.0 years ago by 33k • written 4.0 years ago by ▴ 40
0
votes
1
reply
2.2k
views
Comment: C: Circos image for Copy Number Variation
4.0 years ago by bk11 ▴ 40
0
votes
3
replies
2.2k
views
Circos image for Copy Number Variation
CNV Circos image
updated 4.0 years ago by ▴ 230 • written 4.0 years ago by ▴ 40
0
votes
1
reply
3.2k
views
Comment: C: Compare between two columns of two different files and print common
4.0 years ago by bk11 ▴ 40
0
votes
0
replies
3.2k
views
Comment: C: Compare between two columns of two different files and print common
4.0 years ago by bk11 ▴ 40
5
votes
7
replies
3.2k
views
Compare between two columns of two different files and print common
awk bash
updated 3 months ago by 78k • written 4.0 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Comment: C: Extract gene lists using two files
4.0 years ago by bk11 ▴ 40
0
votes
2
replies
1.2k
views
Comment: A: Extract gene lists using two files
4.0 years ago by bk11 ▴ 40
0
votes
2
replies
1.2k
views
Comment: C: Extract gene lists using two files
4.0 years ago by bk11 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Extract gene lists using two files
4.0 years ago by bk11 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Extract gene lists using two files
4.0 years ago by bk11 ▴ 40
0
votes
0
replies
775
views
VISUALIZING SPECIFIED REGIONS using CNVnator
CNV
4.0 years ago by bk11 ▴ 40
0
votes
0
replies
1.5k
views
Comment: A: cvnkit: what is the problem here?
4.1 years ago by bk11 ▴ 40
0
votes
2
replies
1.9k
views
How to find target genes of long non coding RNA
RNA-Seq
updated 4.1 years ago by 46k • written 4.2 years ago by ▴ 40
0
votes
0
replies
2.1k
views
Comment: C: About bedtools closest command line output understanding
4.1 years ago by bk11 ▴ 40
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