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Answer: Answer: How to determine n and c terminal nucleotide bases from fasta sequences via R or
8 months ago by bk11 ★ 3.1k
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758
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Comment: Comment: Cellranger: Demux pooled (hashing antibodies) GEX and VDJ 10x sequence fastq dat
10 months ago by bk11 ★ 3.1k
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Answer: Answer: dittoHeatmap; adding column labels on the heatmap
10 months ago by bk11 ★ 3.1k
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1.1k
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Comment: Comment: Bulk RNA seq PCA plot issues
11 months ago by bk11 ★ 3.1k
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1.9k
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Comment: Comment: Permutations FGSEA
11 months ago by bk11 ★ 3.1k
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1.6k
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Comment: Comment: Help with subset seurat object by a column in metadata
11 months ago by bk11 ★ 3.1k
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1.6k
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Answer: Answer: Dealing with 2 different layers of counts within RNA assay in seurat
11 months ago by bk11 ★ 3.1k
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860
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Comment: Comment: Pedigree information
11 months ago by bk11 ★ 3.1k
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1
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774
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Answer: Answer: Merging bfiles
11 months ago by bk11 ★ 3.1k
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684
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Comment: Comment: Extracting column from one seurat object based on common column and adding to th
11 months ago by bk11 ★ 3.1k
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599
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Comment: Comment: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
11 months ago by bk11 ★ 3.1k
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685
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Answer: Answer: Best approach for identifying top proteins in a single cluster in single-cell an
11 months ago by bk11 ★ 3.1k
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853
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Answer: Answer: High inconsistency between edgeR and DESeq2
12 months ago by bk11 ★ 3.1k
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1.2k
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Answer: Answer: Best practice for gene ontology/pathway/geneset enrichment in 10x data
12 months ago by bk11 ★ 3.1k
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1.7k
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Answer: Answer: Plink HWE QC question
12 months ago by bk11 ★ 3.1k
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656
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Comment: Comment: How to merge two species of scATAC data
12 months ago by bk11 ★ 3.1k
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1
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895
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Comment: Comment: CCA integration
12 months ago by bk11 ★ 3.1k
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879
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Answer: Answer: Enhanced Volcano not working on ANY data. Coerces everything to NaN
12 months ago by bk11 ★ 3.1k
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865
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Comment: Comment: Using findmarker of seurat with different test.use but getting the same resulat.
12 months ago by bk11 ★ 3.1k
2
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1.0k
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Answer: Answer: Updating phenotype column for .ped .fam files (PLINK --pheno not working)
12 months ago by bk11 ★ 3.1k
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1.7k
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Answer: Answer: Remove part of a header in a fasta file
12 months ago by bk11 ★ 3.1k
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2.0k
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Comment: Comment: Seurat V5 Subscript Out of Bounds Error
12 months ago by bk11 ★ 3.1k
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1
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909
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Comment: Comment: R package to visualize multiple aligned chromatograms
13 months ago by bk11 ★ 3.1k
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814
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Answer: Answer: Appending a Poly-A Tail to a Reference Transcriptome
13 months ago by bk11 ★ 3.1k
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1
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1.6k
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Answer: Answer: Plotting LD heat map with plink.ld result
13 months ago by bk11 ★ 3.1k
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1.3k
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Comment: Comment: Last against ncbi nr database
13 months ago by bk11 ★ 3.1k
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0
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559
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Comment: Comment: QC for UKB GWAS data
13 months ago by bk11 ★ 3.1k
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1
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1.3k
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Comment: Comment: Last against ncbi nr database
13 months ago by bk11 ★ 3.1k
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1
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869
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Comment: Comment: Where to find open access data of SNP arrays to perform GWAS
13 months ago by bk11 ★ 3.1k
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1.1k
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Comment: Comment: Unable to open HDF5 file
13 months ago by bk11 ★ 3.1k
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0
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800
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Comment: Comment: plink2 giving multiple errors
13 months ago by bk11 ★ 3.1k
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1
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800
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Comment: Comment: plink2 giving multiple errors
13 months ago by bk11 ★ 3.1k
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0
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485
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Comment: Comment: how to visualize Geno Ontology classification
14 months ago by bk11 ★ 3.1k
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1
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681
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Answer: Answer: Remove bacterial and protoza from Kraken2 EuPathDB
14 months ago by bk11 ★ 3.1k
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0
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2.1k
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Comment: Comment: Can't increase font size for x axis
14 months ago by bk11 ★ 3.1k
2
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1
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2.1k
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Answer: Answer: Can't increase font size for x axis
14 months ago by bk11 ★ 3.1k
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0
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4.6k
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Answer: Answer: Good Bioinformatics Jokes/Puns?
14 months ago by bk11 ★ 3.1k
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1
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2.2k
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Answer: Answer: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
14 months ago by bk11 ★ 3.1k
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1
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1.4k
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Comment: Comment: Histogram of normalized counts for each cell type
14 months ago by bk11 ★ 3.1k
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0
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1.5k
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Comment: Comment: ROH and Manhattan plot
14 months ago by bk11 ★ 3.1k
2
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1
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1.4k
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Answer: Answer: Histogram of normalized counts for each cell type
updated 15 months ago by 45k • written 15 months ago by ★ 3.1k
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1
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1.5k
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Comment: Comment: ROH and Manhattan plot
15 months ago by bk11 ★ 3.1k
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1
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2.2k
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Comment: Comment: Subset cells in Seurat data based on reads and gene expression
updated 15 months ago by 45k • written 15 months ago by ★ 3.1k
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1
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2.2k
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Answer: Answer: Subset cells in Seurat data based on reads and gene expression
updated 15 months ago by 45k • written 15 months ago by ★ 3.1k
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1
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1.6k
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Answer: Answer: Am I getting TPM correct from tcga?
updated 15 months ago by 45k • written 15 months ago by ★ 3.1k
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1.5k
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Comment: Comment: METAL ERROR: The command you issued could not be processed ...
15 months ago by bk11 ★ 3.1k
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1.2k
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Answer: Answer: Consistent cluster coloring
15 months ago by bk11 ★ 3.1k
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1
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2.0k
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Answer: Answer: Slot to pull data from for DoHeatmap
15 months ago by bk11 ★ 3.1k
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1
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938
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Comment: Comment: Phasing human samples with Shapeit4
15 months ago by bk11 ★ 3.1k
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0
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860
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Answer: Answer: MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.
15 months ago by bk11 ★ 3.1k
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