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Comment: Comment: Cellranger: Demux pooled (hashing antibodies) GEX and VDJ 10x sequence fastq dat
4 weeks ago by bk11 ★ 3.0k
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1
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669
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Answer: Answer: dittoHeatmap; adding column labels on the heatmap
6 weeks ago by bk11 ★ 3.0k
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463
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Comment: Comment: Bulk RNA seq PCA plot issues
7 weeks ago by bk11 ★ 3.0k
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0
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766
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Comment: Comment: Permutations FGSEA
7 weeks ago by bk11 ★ 3.0k
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1
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644
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Comment: Comment: Help with subset seurat object by a column in metadata
9 weeks ago by bk11 ★ 3.0k
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1
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425
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Answer: Answer: Dealing with 2 different layers of counts within RNA assay in seurat
9 weeks ago by bk11 ★ 3.0k
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0
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415
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Comment: Comment: Pedigree information
10 weeks ago by bk11 ★ 3.0k
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1
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331
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Answer: Answer: Merging bfiles
10 weeks ago by bk11 ★ 3.0k
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0
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337
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Comment: Comment: Extracting column from one seurat object based on common column and adding to th
10 weeks ago by bk11 ★ 3.0k
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0
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291
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Comment: Comment: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
10 weeks ago by bk11 ★ 3.0k
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0
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379
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Answer: Answer: Best approach for identifying top proteins in a single cluster in single-cell an
11 weeks ago by bk11 ★ 3.0k
2
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0
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429
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Answer: Answer: High inconsistency between edgeR and DESeq2
11 weeks ago by bk11 ★ 3.0k
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1
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527
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Answer: Answer: Best practice for gene ontology/pathway/geneset enrichment in 10x data
11 weeks ago by bk11 ★ 3.0k
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0
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366
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Answer: Answer: Plink HWE QC question
11 weeks ago by bk11 ★ 3.0k
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1
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309
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Comment: Comment: How to merge two species of scATAC data
3 months ago by bk11 ★ 3.0k
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1
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340
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Comment: Comment: CCA integration
3 months ago by bk11 ★ 3.0k
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0
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469
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Answer: Answer: Enhanced Volcano not working on ANY data. Coerces everything to NaN
3 months ago by bk11 ★ 3.0k
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0
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416
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Comment: Comment: Using findmarker of seurat with different test.use but getting the same resulat.
3 months ago by bk11 ★ 3.0k
2
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0
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391
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Answer: Answer: Updating phenotype column for .ped .fam files (PLINK --pheno not working)
3 months ago by bk11 ★ 3.0k
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0
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1.1k
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Answer: Answer: Remove part of a header in a fasta file
3 months ago by bk11 ★ 3.0k
0
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0
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533
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Comment: Comment: Seurat V5 Subscript Out of Bounds Error
3 months ago by bk11 ★ 3.0k
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1
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405
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Comment: Comment: R package to visualize multiple aligned chromatograms
3 months ago by bk11 ★ 3.0k
1
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1
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418
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Answer: Answer: Appending a Poly-A Tail to a Reference Transcriptome
4 months ago by bk11 ★ 3.0k
2
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1
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596
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Answer: Answer: Plotting LD heat map with plink.ld result
4 months ago by bk11 ★ 3.0k
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0
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567
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Comment: Comment: Last against ncbi nr database
4 months ago by bk11 ★ 3.0k
1
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0
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241
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Comment: Comment: QC for UKB GWAS data
4 months ago by bk11 ★ 3.0k
1
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1
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567
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Comment: Comment: Last against ncbi nr database
4 months ago by bk11 ★ 3.0k
1
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1
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413
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Comment: Comment: Where to find open access data of SNP arrays to perform GWAS
4 months ago by bk11 ★ 3.0k
0
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0
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457
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Comment: Comment: Unable to open HDF5 file
4 months ago by bk11 ★ 3.0k
1
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0
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397
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Comment: Comment: plink2 giving multiple errors
4 months ago by bk11 ★ 3.0k
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1
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397
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Comment: Comment: plink2 giving multiple errors
4 months ago by bk11 ★ 3.0k
0
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0
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267
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Comment: Comment: how to visualize Geno Ontology classification
4 months ago by bk11 ★ 3.0k
1
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1
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292
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Answer: Answer: Remove bacterial and protoza from Kraken2 EuPathDB
4 months ago by bk11 ★ 3.0k
1
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0
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863
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Comment: Comment: Can't increase font size for x axis
4 months ago by bk11 ★ 3.0k
2
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1
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863
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Answer: Answer: Can't increase font size for x axis
4 months ago by bk11 ★ 3.0k
0
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0
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2.0k
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Answer: Answer: Good Bioinformatics Jokes/Puns?
5 months ago by bk11 ★ 3.0k
0
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1
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804
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Answer: Answer: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
5 months ago by bk11 ★ 3.0k
0
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1
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742
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Comment: Comment: Histogram of normalized counts for each cell type
5 months ago by bk11 ★ 3.0k
1
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0
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797
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Comment: Comment: ROH and Manhattan plot
5 months ago by bk11 ★ 3.0k
2
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1
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742
views
Answer: Answer: Histogram of normalized counts for each cell type
updated 5 months ago by 44k • written 5 months ago by ★ 3.0k
1
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1
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797
views
Comment: Comment: ROH and Manhattan plot
5 months ago by bk11 ★ 3.0k
0
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1
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974
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Comment: Comment: Subset cells in Seurat data based on reads and gene expression
updated 5 months ago by 44k • written 5 months ago by ★ 3.0k
0
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1
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974
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Answer: Answer: Subset cells in Seurat data based on reads and gene expression
updated 5 months ago by 44k • written 5 months ago by ★ 3.0k
1
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1
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719
views
Answer: Answer: Am I getting TPM correct from tcga?
updated 5 months ago by 44k • written 5 months ago by ★ 3.0k
0
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0
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777
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Comment: Comment: METAL ERROR: The command you issued could not be processed ...
6 months ago by bk11 ★ 3.0k
2
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1
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573
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Answer: Answer: Consistent cluster coloring
6 months ago by bk11 ★ 3.0k
1
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1
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854
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Answer: Answer: Slot to pull data from for DoHeatmap
6 months ago by bk11 ★ 3.0k
1
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1
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461
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Comment: Comment: Phasing human samples with Shapeit4
6 months ago by bk11 ★ 3.0k
1
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0
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358
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Answer: Answer: MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.
6 months ago by bk11 ★ 3.0k
1
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1
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797
views
Comment: Comment: ROH and Manhattan plot
6 months ago by bk11 ★ 3.0k
473 results • Page 1 of 10
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