Moderator: ATpoint
ATpoint ♦ 9.5k
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Posts by ATpoint
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... What is of interest is the format of data you have. A BED file with the scores, fastq files, BAM files, bigwigs? That will decide what tool to be used (to be used first). ...
written 1 hour ago by
ATpoint ♦ 9.5k
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Answer:
A: Problem with vcf-merge
... You have to use `vcf-merge` on the gzipped and tabixed files directly. In your command you use them on the uncompressed ones:
bgzip file1.vcf > file1.vcf.gz
tabix -p file1.vcf.gz
vcf-merge file1.vcf.gz file2.vcf.gz > merged.vcf ...
written 2 hours ago by
ATpoint ♦ 9.5k
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... Did the indexing of the fasta file go without errors? ...
written 3 hours ago by
ATpoint ♦ 9.5k
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Comment:
C: Question Paper for ICAR NET
... Hello diptenl!
We believe that this post does not fit the main topic of this site.
Please respect that this is a technical Q/A community, not intended for that kind of question.
For this reason we have closed your question. This allows us to keep the site focused
on the topics that the community ...
written 10 hours ago by
ATpoint ♦ 9.5k
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... Does [this][1] help?
[1]: https://www.biostars.org/p/2349/ ...
written 10 hours ago by
ATpoint ♦ 9.5k
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... AC: Locus identifier / Accession number at Genbank & NCBI
gi: GI number (sometimes written in lower case, "gi") is simply a series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Accession number of the s ...
written 11 hours ago by
ATpoint ♦ 9.5k
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... Wouldn't you better ask this in a community where people indeed have **no** bioinformatics skills rather than a community such as this one where probably 99.9% have at least some basic understanding of bioinformatics and (in a broader sense) coding and related things? ...
written 11 hours ago by
ATpoint ♦ 9.5k
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... > H3K4me1 is a well known marker for active enhancers
No, it is a histone modification associated with enhancers (or regulatory elements in general, given that the word 'enhancer' is inflationarily used in the literature for almost everything that is not a promoter and associated with either ope ...
written 1 day ago by
ATpoint ♦ 9.5k
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... Simply convert fq to fa. Plenty of posts both on Biostars and the web on that available. ...
written 1 day ago by
ATpoint ♦ 9.5k
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... Hello rc16955!
We believe that this post does not fit the main topic of this site.
This question has been asked multiple times before, see e.g.:
[Get intronic and intergenic sequences based on GFF file][1]
For this reason we have closed your question. This allows us to keep the site focused
on ...
written 1 day ago by
ATpoint ♦ 9.5k
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For C: Does BWA mem work with uBAM file?
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For A: How many variants shall I expect in .vcf file?
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For C: Does BWA mem work with uBAM file?
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For C: To screen for a good aligner
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