Moderator: ATpoint
ATpoint ♦ 19k
- Reputation:
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- Last seen:
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- 3 years, 3 months ago
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I hate Western blots.
Posts by ATpoint
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... You have no control over what kinds of off-targets you capturing array binds. Of course you design it to minimize off-targets but this is not a perfect process. Therefore, you always align to the entire genome. ...
written 2 hours ago by
ATpoint ♦ 19k
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Comment:
C: Why samtools depth error
... There you already have your answer. The `chr` prefix must be removed. Please show how you removed it in the first place (command line). ...
written 3 hours ago by
ATpoint ♦ 19k
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... For these specific questions on `DESeq2` I suggest you post this over at https://support.bioconductor.org/ to get expertise from the developer right away. ...
written 3 hours ago by
ATpoint ♦ 19k
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... Whole genome, that filter for reads mapping to the genes you captured. Please use the search fucntion: https://www.biostars.org/p/787/ ...
written 4 hours ago by
ATpoint ♦ 19k
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Comment:
C: mRNA positions from vcf
... What is unclear? The page summarizing LOC729737 and there you see that based on Ensembl automatic analysis pipeline there is some yet not verified evidence for a protein-coding gene. ...
written 4 hours ago by
ATpoint ♦ 19k
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... Is this a common genome, such as human/mouse for which liftOver chain files exist? https://software.broadinstitute.org/gatk/documentation/tooldocs/4.0.0.0/picard_vcf_LiftoverVcf.php ...
written 5 hours ago by
ATpoint ♦ 19k
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Comment:
C: mRNA positions from vcf
... See [here][1]:
ID: C9J4L2_HUMAN
DESCRIPTION: SubName: Full=Uncharacterized protein;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.
[1]: https://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc0 ...
written 5 hours ago by
ATpoint ♦ 19k
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... Please ask this over at StackExchange as this is not bioinformatics-related. ...
written 5 hours ago by
ATpoint ♦ 19k
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... It would be a good start to show your command lines, which is good practice when asking questions, see https://www.biostars.org/p/357878/ ...
written 7 hours ago by
ATpoint ♦ 19k
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For C: How to justify the proteins by their pathways in the discussion for research pap
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For C: How to justify the proteins by their pathways in the discussion for research pap
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