Moderator: ATpoint

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ATpoint9.5k
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Posts by ATpoint

<prev • 1,304 results • page 1 of 131 • next >
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Comment: C: Mapping methylation pattern and translocation breakpoints
... What is of interest is the format of data you have. A BED file with the scores, fastq files, BAM files, bigwigs? That will decide what tool to be used (to be used first). ...
written 1 hour ago by ATpoint9.5k
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Answer: A: Problem with vcf-merge
... You have to use `vcf-merge` on the gzipped and tabixed files directly. In your command you use them on the uncompressed ones: bgzip file1.vcf > file1.vcf.gz tabix -p file1.vcf.gz vcf-merge file1.vcf.gz file2.vcf.gz > merged.vcf ...
written 2 hours ago by ATpoint9.5k
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Comment: C: Error in normalizing lines of sequence in a fasta file using NormalizeFasta (Pi
... Did the indexing of the fasta file go without errors? ...
written 3 hours ago by ATpoint9.5k
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Comment: C: Question Paper for ICAR NET
... Hello diptenl! We believe that this post does not fit the main topic of this site. Please respect that this is a technical Q/A community, not intended for that kind of question. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community ...
written 10 hours ago by ATpoint9.5k
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Comment: C: How to divide a chromosome into arms and center?
... Does [this][1] help? [1]: https://www.biostars.org/p/2349/ ...
written 10 hours ago by ATpoint9.5k
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Answer: A: Heading format for GRCh38 reference file.
... AC: Locus identifier / Accession number at Genbank & NCBI gi: GI number (sometimes written in lower case, "gi") is simply a series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Accession number of the s ...
written 11 hours ago by ATpoint9.5k
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Comment: C: Survey - Tell me about your Bioinformatics struggles
... Wouldn't you better ask this in a community where people indeed have **no** bioinformatics skills rather than a community such as this one where probably 99.9% have at least some basic understanding of bioinformatics and (in a broader sense) coding and related things? ...
written 11 hours ago by ATpoint9.5k
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Comment: C: How can I correlate ATAC-seq peak signal with enhancer ChIP-seq mark signal (H3K
... > H3K4me1 is a well known marker for active enhancers No, it is a histone modification associated with enhancers (or regulatory elements in general, given that the word 'enhancer' is inflationarily used in the literature for almost everything that is not a promoter and associated with either ope ...
written 1 day ago by ATpoint9.5k
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Comment: C: Calculate CG content in a fastq file
... Simply convert fq to fa. Plenty of posts both on Biostars and the web on that available. ...
written 1 day ago by ATpoint9.5k
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Comment: C: Make bed files for different functional group given GFF3 file
... Hello rc16955! We believe that this post does not fit the main topic of this site. This question has been asked multiple times before, see e.g.: [Get intronic and intergenic sequences based on GFF file][1] For this reason we have closed your question. This allows us to keep the site focused on ...
written 1 day ago by ATpoint9.5k

Latest awards to ATpoint

Scholar 8 hours ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Scholar 9 hours ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 10 hours ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 21 hours ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 21 hours ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 21 hours ago, created an answer with at least 3 up-votes. For A: How many variants shall I expect in .vcf file?
Popular Question 2 days ago, created a question with more than 1,000 views. For Signal-to-Noise Plots for NGS Data; Selection of Background Regions
Teacher 5 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Commentator 5 days ago, created a comment with at least 3 up-votes. For C: To screen for a good aligner
Scholar 10 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 12 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 12 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Commentator 13 days ago, created a comment with at least 3 up-votes. For C: To screen for a good aligner
Scholar 14 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Scholar 15 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Commentator 19 days ago, created a comment with at least 3 up-votes. For C: To screen for a good aligner
Scholar 19 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 21 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 23 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 26 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 28 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 29 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 4 weeks ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?

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