Moderator: ATpoint
ATpoint ♦ 7.4k
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#! /usr/bin/Rscript class(ATpoint) > [1] 50% wet-lab rat > [2] 50% wannaba computational biologist cat(Research_Interests) > Impact of somatic mutations on the non-coding genome
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C: GRCh37.p13 download at NCBI FTP?
... Yes Ma'am. Apologies for my carelessness ;-) ...
written 5 hours ago by
ATpoint ♦ 7.4k
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... Assuming `"\t"` between columns and `whitespace` between animals, do:
while read p; do grep $p your_list.txt | cut -f1 | cat <(echo $p) <(cat /dev/stdin); done < <(cut -f2 your_list.txt | awk 'NR > 1 {gsub(" ", "\n"); print $0}' | awk NF | sort -k1,1 -u)
It takes the unique IDs ...
written 5 hours ago by
ATpoint ♦ 7.4k
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... What are the delimiters between the columns (I assume tab) and between the animals (I assume whitespace)? ...
written 5 hours ago by
ATpoint ♦ 7.4k
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... Hello hosein_salehi6!
Please do not post duplicates.
For this reason we have closed your question. This allows us to keep the site focused
on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!
...
written 5 hours ago by
ATpoint ♦ 7.4k
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Comment:
C: GRCh37.p13 download at NCBI FTP?
... You can get it [from Ensembl][1] ensemble =), downloading `Homo_sapiens.GRCh37.dna.primary_assembly.fa.gz`. Still GRCh19 is old. Any reason you do not go with GRCh38?
[1]: ftp://ftp.ensembl.org/pub/grch37/current/fasta/homo_sapiens/dna/ ...
written 6 hours ago by
ATpoint ♦ 7.4k
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Comment:
C: Parsing header of FASTA File
... Did it work for you @Shelle ? ...
written 7 hours ago by
ATpoint ♦ 7.4k
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... Did you read this one already: [Question: Is there a conceptual difference between vst/rlog transforms and lfcShrink?][1]?
[1]: https://support.bioconductor.org/p/104615/ ...
written 7 hours ago by
ATpoint ♦ 7.4k
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... Hi kgma225,
please reformat your question. There are multiple typos and a lack of details and content, as Ram already mentioned. Both might make you look lazy, demotivating people to help you. Putting some effort into your question will notably increase your chance of an elaborate answer. ...
written 22 hours ago by
ATpoint ♦ 7.4k
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... Are you pipe the output into a sorting tool that might take up some memory? ...
written 1 day ago by
ATpoint ♦ 7.4k
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Comment:
C: FRIP score ATAC-seq
... Good catch with the switched `-a/b`, didn't even notice that :) ...
written 1 day ago by
ATpoint ♦ 7.4k
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