Moderator: ATpoint
ATpoint ♦ 41k
- Reputation:
- 41,440
- Status:
- Trusted
- Location:
- Germany
- Last seen:
- 10 minutes ago
- Joined:
- 4 years, 7 months ago
- Email:
- a*********@gmail.com
Posts by ATpoint
<prev
• 6,097 results •
page 1 of 610 •
next >
0
votes
0
answers
29
views
0
answers
... https://pysam.readthedocs.io/en/latest/api.html ...
written 1 hour ago by
ATpoint ♦ 41k
0
votes
1
answer
65
views
1
answers
... Don't waste your time with SE Biology, imho it is mostly a dumpster fire, quality of questions there is abysmal and I have the feeling therefore experienced users often do not even visit it to give good answers, so better post it in a suitable subReddit. This is no offense again SE in particular, ju ...
written 2 hours ago by
ATpoint ♦ 41k
0
votes
0
answers
29
views
0
answers
... Check `pysam` rather than coming up with costom solutions, it is the swiss-army knife for sequencing data manipulation in python. ...
written 3 hours ago by
ATpoint ♦ 41k
0
votes
0
answers
28
views
0
answers
... You received answers in many of your previous questions. Please take the time to upvote and accept helpful ones. ...
written 3 hours ago by
ATpoint ♦ 41k
0
votes
0
answers
45
views
0
answers
... It is difficult to comment on anecdotal descriptions without seeing plots and having details on how you processed data. ...
written 4 hours ago by
ATpoint ♦ 41k
0
votes
0
answers
62
views
0
answers
Comment:
C: error in sed usage
... That's not what I mean. Please give a representative example of the content of each variable so we know what it contains, not code, just a string what they contain. ...
written 23 hours ago by
ATpoint ♦ 41k
0
votes
0
answers
56
views
0
answers
... This is not obviously related to bioinformatics. Please explain better or consider to ask over at CrossValidated after adding some details and clarity. ...
written 1 day ago by
ATpoint ♦ 41k
1
vote
1
answer
169
views
1
answers
... I cannot find the thread from `support.bioconductor.org` right now but if memory serves the `DESeq2` developer at some point stated that rounding floats to integers is ok since the difference from a float to its nearest integer is tiny while true biological changes between groups are expected to be ...
written 2 days ago by
ATpoint ♦ 41k
0
votes
1
answer
151
views
1
answers
Comment:
C: Analysis of RNA-seq data
... You are not getting my point. You can explicitely define an alternative hypothesis to test against differential expression the same way you test for differential expression in the standard workflow, but with this so-called `altHypothesis` you still take dispersion and baseMean into account and filte ...
written 2 days ago by
ATpoint ♦ 41k
2
votes
1
answer
87
views
1
answers
Comment:
C: Batch effect correction
... As said, perfect confounding cannot be magically removed. sva and any other package obeys the rules of linear algebra. Answer is unfortunately no. I mean you can perform DE without batch correction and take the results for hypothesis generation, but be aware that this is not reliable. If you then fi ...
written 3 days ago by
ATpoint ♦ 41k
Latest awards to ATpoint
Teacher
16 hours ago,
created an answer with at least 3 up-votes.
For A: Get sequence by genomic coordinates in R
Scholar
16 hours ago,
created an answer that has been accepted.
For A: Get sequence by genomic coordinates in R
Appreciated
1 day ago,
created a post with more than 5 votes.
For A: Get sequence by genomic coordinates in R
Scholar
1 day ago,
created an answer that has been accepted.
For A: Get sequence by genomic coordinates in R
Appreciated
1 day ago,
created a post with more than 5 votes.
For A: Get sequence by genomic coordinates in R
Popular Question
3 days ago,
created a question with more than 1,000 views.
For [[ Please read before posting a question ::: How To Ask A Good Question ]]
Scholar
5 days ago,
created an answer that has been accepted.
For C: Does BWA mem work with uBAM file?
Prophet
6 days ago,
created a post with more than 20 followers.
For [[ Please read before posting a question ::: How To Ask A Good Question ]]
Scholar
6 days ago,
created an answer that has been accepted.
For A: Get sequence by genomic coordinates in R
Scholar
9 days ago,
created an answer that has been accepted.
For C: Does BWA mem work with uBAM file?
Teacher
11 days ago,
created an answer with at least 3 up-votes.
For A: Get sequence by genomic coordinates in R
Scholar
11 days ago,
created an answer that has been accepted.
For A: Get sequence by genomic coordinates in R
Scholar
12 days ago,
created an answer that has been accepted.
For C: Does BWA mem work with uBAM file?
Teacher
13 days ago,
created an answer with at least 3 up-votes.
For C: Does BWA mem work with uBAM file?
Scholar
14 days ago,
created an answer that has been accepted.
For C: Does BWA mem work with uBAM file?
Scholar
14 days ago,
created an answer that has been accepted.
For C: Does BWA mem work with uBAM file?
Appreciated
16 days ago,
created a post with more than 5 votes.
For A: Get sequence by genomic coordinates in R
Teacher
19 days ago,
created an answer with at least 3 up-votes.
For A: Get sequence by genomic coordinates in R
Scholar
22 days ago,
created an answer that has been accepted.
For C: Does BWA mem work with uBAM file?
Good Answer
22 days ago,
created an answer that was upvoted at least 5 times.
For A: Get sequence by genomic coordinates in R
Appreciated
22 days ago,
created a post with more than 5 votes.
For A: Get sequence by genomic coordinates in R
Teacher
22 days ago,
created an answer with at least 3 up-votes.
For C: Does BWA mem work with uBAM file?
Commentator
22 days ago,
created a comment with at least 3 up-votes.
For C: How to justify the proteins by their pathways in the discussion for research pap
Appreciated
27 days ago,
created a post with more than 5 votes.
For A: Get sequence by genomic coordinates in R
Teacher
29 days ago,
created an answer with at least 3 up-votes.
For C: Does BWA mem work with uBAM file?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2136 users visited in the last hour