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User: Shicheng Guo

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Shicheng Guo • 7.8k
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Posts by Shicheng Guo

<prev • 669 results • page 1 of 67 • next >
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Comment: C: Build repeat genome index using STAR
... Why not remove the repeat region maps with repeatmask regions after the alignment? ...
written 1 day ago by Shicheng Guo • 7.8k
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novel approaches to the functional assessment of genomic and/or epigenomic variants
... Hi All, A job description said **the positon focused on novel approaches to the functional assessment of genomic and/or epigenomic variants associated with cancer and other human diseases.** What kinds of skill is required for this position? Thanks ...
functional assessment variants written 5 days ago by Shicheng Guo • 7.8k • updated 5 days ago by jared.andrews07 • 3.9k
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Comment: C: How To Identify The Protein Domains Of A Specific Protein?
... Is there any tutorial to use pfam + prosite together? ...
written 15 days ago by Shicheng Guo • 7.8k
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Structure change caused by R275C mutation in COL2A1
... Hi All, I found a R275C mutation in COL2A1 and I want to check what's the effect of this mutation to the structure of COL2A1. Any [tools][1] to [suggest][2]? Thanks. [1]: https://icn3d.page.link/jFHy [2]: https://swissmodel.expasy.org/interactive/45wkNr/models/ ...
r275c col2a1 written 15 days ago by Shicheng Guo • 7.8k
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Comment: C: Linux sort P-values with scientific notation
... interesting. remove `n` numeric works. and works very well ...
written 16 days ago by Shicheng Guo • 7.8k
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Linux sort P-values with scientific notation
... Hi All, I want to sort P-values in `bash` with `sort` command. The P-values are as the following: A 1.14e-06 B 4.35e-05 C 0.5361 D 0.7278 When you use `sort -k2n,2 input.txt`, the result is as the following: C 0.5361 D 0.7278 A 1.14e-06 B ...
pvalue sort scientific notation written 16 days ago by Shicheng Guo • 7.8k • updated 16 days ago by zx8754 ♦ 8.4k
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Comment: C: miRWalk and Cytoscape to show microRNA-mRNA interactions
... Thanks Leite, Your suggestion is really helpful!! ...
written 17 days ago by Shicheng Guo • 7.8k
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How to identify similar scientists based on published abstracts
... Hi All, Here is the idea. I want to identify a group of scientists based on their published abstracts. Any R packages? Thanks ...
R helioblast peer jane written 17 days ago by Shicheng Guo • 7.8k
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Detecting copy number variants from whole-exome sequencing data
... Hi All, 1. Which tool could provide the most accurate CNV calling to whole-exome sequencing data? 2. Is there any publicly available data have both WGS and WEX to the same sample to be used for CNV calling evaluation. Thanks. ...
exome-seq cnv written 19 days ago by Shicheng Guo • 7.8k • updated 19 days ago by hafiz.talhamalik • 210
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miRWalk and Cytoscape to show microRNA-mRNA interactions
... Hi All, I have about 5 miRNAs and each of them I have some confirmed mRNA target, I want to use the following figure to show the network among these miRNA and mRNA. Is there any protocol? Thanks. ![enter image description here][1] [1]: https://raw.githubusercontent.com/Shicheng-Guo/Shiche ...
microrna-mrna cytoscape mirwalk written 22 days ago by Shicheng Guo • 7.8k

Latest awards to Shicheng Guo

Popular Question 9 days ago, created a question with more than 1,000 views. For Development Layer Specific Gene Expression Atlas in Human
Commentator 13 days ago, created a comment with at least 3 up-votes. For C: Fastqc to BS-seq dataset (Methylation-seq quality control)
Popular Question 19 days ago, created a question with more than 1,000 views. For Development Layer Specific Gene Expression Atlas in Human
Popular Question 29 days ago, created a question with more than 1,000 views. For Development Layer Specific Gene Expression Atlas in Human
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Great Question 7 weeks ago, created a question with more than 5,000 views. For fastq-dump split-spot and skip-technical
Great Question 10 weeks ago, created a question with more than 5,000 views. For fastq-dump split-spot and skip-technical
Popular Question 3 months ago, created a question with more than 1,000 views. For BSP Primers Alignment Option Optimization (Bismark)
Popular Question 3 months ago, created a question with more than 1,000 views. For BSP Primers Alignment Option Optimization (Bismark)
Popular Question 4 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Great Question 4 months ago, created a question with more than 5,000 views. For fastq-dump split-spot and skip-technical
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Fastqc to BS-seq dataset (Methylation-seq quality control)
Appreciated 5 months ago, created a post with more than 5 votes. For A: What are chimeric reads?
Popular Question 5 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 5 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 5 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 5 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 5 months ago, created a question with more than 1,000 views. For LD plot for both microsatellites and SNP data (Haploview)
Popular Question 5 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
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Popular Question 6 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 7 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
Popular Question 7 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10
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