User: Shicheng Guo
Shicheng Guo • 4.5k
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Posts by Shicheng Guo
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1.3k
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Comment:
C: IBD vs IBS
... Quite clear answer! might be clear. ...
written 25 days ago by
Shicheng Guo • 4.5k
0
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133
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... Here, we hope to talk about the comparison between different genetic linkage analysis software tools. Several years ago, I used ***Merlin*** to do linkage analysis to a NGS genome-wide SNP dataset (family data). Now, I tried to apply some other genetic linkage analysis software tools and hope to kno ...
written 4 weeks ago by
Shicheng Guo • 4.5k
2
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answers
221
views
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... This page were applied to list all the computational tools for multiplex PCR primer design for Oligo Design for Multiplex PCR & High Throughput SNP/RNA/BSP and Analysis.
1, http://www.premierbiosoft.com/primerplex/index.html
2, https://omictools.com/msre-htprimer-tool
3, https://omictools.co ...
written 4 weeks ago by
Shicheng Guo • 4.5k
• updated
4 weeks ago by
genomax ♦ 33k
0
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1
answer
216
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1
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... Yes. It is exactly what I need. Thanks. ...
written 3 months ago by
Shicheng Guo • 4.5k
4
votes
1
answer
216
views
6 follow
1
answer
... Hi All,
I have one interest TF and its motif sequence is known (both logo and frequency matrix) and I want to identify all the related genomic regions. Is there any Perl, R or Python script to share? You can find that the perl script works perfect. therefore, I suggest you to use perl script.
b ...
written 3 months ago by
Shicheng Guo • 4.5k
0
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0
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274
views
0
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Comment:
C: Phred score check for BAM files
... I hope to achieve the phred score from bam files which download from public database with this script. ...
written 3 months ago by
Shicheng Guo • 4.5k
0
votes
1
answer
206
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1
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... GEO (least 20 characters) ...
written 4 months ago by
Shicheng Guo • 4.5k
0
votes
1
answer
206
views
1
answer
... Suppose I want to upload some of my own dataset with some GEO provious dataset. In order to keep all these data tracked, How can I also provide the corresponding links to these pre-existed GEO dataset?
Just like this page: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE46644
I also want t ...
written 4 months ago by
Shicheng Guo • 4.5k
• updated
4 months ago by
igor • 4.5k
0
votes
4
answers
1.8k
views
4
answers
Answer:
A: SRX from SRR IDs
... I can share my perl script to collect SRR and SRX information together. You can make further adoption
#!/usr/bin/perl -w
# A perl script to build config file for SRS Bam Merge
# Version 1.3
# Go to http://sra.dnanexus.com/studies/SRP028600/samples
# Select SRS and Click Re ...
written 4 months ago by
Shicheng Guo • 4.5k
1
vote
0
answers
274
views
0
answers
... Hi All,
I finish a perl script to check the phred score for bam files. I just want to make sure there is no bugs in it.
Thanks.
> Usage: perl bam2phred.pl input.bam
#!/usr/bin/perl
use strict;
if ($ARGV[0] =~ /^-[h?]/) {
print "Usage: determine-phred FILE
Reads a ...
written 4 months ago by
Shicheng Guo • 4.5k
• updated
4 months ago by
Biostar ♦♦ 20
Latest awards to Shicheng Guo
Popular Question
10 weeks ago,
created a question with more than 1,000 views.
For Relationship table between SRX and SRR in SRA database
Librarian
10 weeks ago,
created a post with more than 10 bookmarks.
For Good Habit for Bioinformatics Analyst or Scientist
Popular Question
10 weeks ago,
created a question with more than 1,000 views.
For Relationship table between SRX and SRR in SRA database
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Relationship table between SRX and SRR in SRA database
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Relationship table between SRX and SRR in SRA database
Student
3 months ago,
asked a question with at least 3 up-votes.
For Converting Phred64 fastq to Phred33 fastq
Student
3 months ago,
asked a question with at least 3 up-votes.
For Converting Phred64 fastq to Phred33 fastq
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3 months ago,
created an answer that was upvoted at least 5 times.
For A: What is a typical workflow to correlate methylation and expression data?
Appreciated
3 months ago,
created a post with more than 5 votes.
For A: What is a typical workflow to correlate methylation and expression data?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Relationship table between SRX and SRR in SRA database
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Relationship table between SRX and SRR in SRA database
Popular Question
5 months ago,
created a question with more than 1,000 views.
For Relationship table between SRX and SRR in SRA database
Great Question
5 months ago,
created a question with more than 5,000 views.
For Protocol To Downlad TCGA Data From GDC
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For bedGraphToBigWig Tutorial and Report
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For How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
Gold Standard
7 months ago,
created a post with more than 25 bookmarks.
For Good Habit for Bioinformatics Analyst or Scientist
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7 months ago,
created a question with more than 1,000 views.
For fastq-dump split-spot and skip-technical
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7 months ago,
created a question with more than 1,000 views.
For fastq-dump split-spot and skip-technical
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9 months ago,
created a question with more than 1,000 views.
For fastq-dump split-spot and skip-technical
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10 months ago,
asked a question with at least 3 up-votes.
For Definition and formula of methylation heterogeneity
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For fastq-dump split-spot and skip-technical
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For Gallery: Computational tools for DNA methylation
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For Fold change > 2 and P-value<0.05 in micro-array differential analysis
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