User: Shicheng Guo

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Shicheng Guo8.0k
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Posts by Shicheng Guo

<prev • 754 results • page 1 of 76 • next >
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Comment: C: Metatranscriptome data analysis
... It will be helpful if you can provide your test dataset. ...
written 1 day ago by Shicheng Guo8.0k
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Comment: C: Humann2 for metatranscriptomic data
... According to the documents of HUMAnN2: MetaPhlAn2 and ChocoPhlAn pangenome database are used to facilitate fast, accurate, and organism-specific functional profiling, Organisms included are Archaea, Bacteria, `Eukaryotes`, and Viruses. It looks like the `Eukaryotes` genome has been included. ...
written 1 day ago by Shicheng Guo8.0k
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Comment: C: Options for cell type deconvolution from whole blood?
... Great. Thanks for these useful information ...
written 5 days ago by Shicheng Guo8.0k
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Comment: A: read.table does not read in all rows!
... My solution is like this: suppose `gene.tab.matrix.v4.txt` is the file you want to read. what you need to do is replace all special symbols such as `, `(`, `)` to `-` and then read it with `read.table`. `Perl` script to replace these special symbols is like this way: perl -p -i -e "s/\'/-/g" g ...
written 8 days ago by Shicheng Guo8.0k • updated 8 days ago by RamRS25k
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Comment: C: How to use SortMeRNA to receive rRNA reads from meta-RNAseq
... Sure, you are definitely a genius in this world. ...
written 8 days ago by Shicheng Guo8.0k
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Comment: C: How to use SortMeRNA to receive rRNA reads from meta-RNAseq
... That's why I ask this question. There is no exactly explain for this easy question in the usage documents. and that's why I come to ask for the confirmation from the experts and thanks you answered my question even that you didn't give a confirmed answer. Thanks all the same 30 second SIR ...
written 9 days ago by Shicheng Guo8.0k
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Comment: C: How to use SortMeRNA to receive rRNA reads from meta-RNAseq
... What's your point? the -- other file is rRNA reads? ...
written 9 days ago by Shicheng Guo8.0k
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Comment: C: How to use SortMeRNA to receive rRNA reads from meta-RNAseq
... No. that's why I said the usage is bad. ...
written 9 days ago by Shicheng Guo8.0k
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Comment: C: How to use SortMeRNA to receive rRNA reads from meta-RNAseq
... the usage document of sortmerna is too bad. ...
written 9 days ago by Shicheng Guo8.0k
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Comment: C: How to use SortMeRNA to receive rRNA reads from meta-RNAseq
... my problem is I want to the know which option could let me receive all the rRNA reads. ...
written 9 days ago by Shicheng Guo8.0k

Latest awards to Shicheng Guo

Teacher 2 days ago, created an answer with at least 3 up-votes. For A: Area under the ROC Curve for genetic data
Student 8 days ago, asked a question with at least 3 up-votes. For Public data access: Single-cell RNA-seq and Buck RNA-seq data
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Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Fastqc to BS-seq dataset (Methylation-seq quality control)
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Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Fastqc to BS-seq dataset (Methylation-seq quality control)
Appreciated 8 months ago, created a post with more than 5 votes. For A: What are chimeric reads?
Popular Question 8 months ago, created a question with more than 1,000 views. For Vector NTI in Window 10

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