User: Shicheng Guo

gravatar for Shicheng Guo
Shicheng Guo4.5k
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2 years, 2 months ago
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Posts by Shicheng Guo

<prev • 340 results • page 1 of 34 • next >
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Comment: C: IBD vs IBS
... Quite clear answer! might be clear. ...
written 25 days ago by Shicheng Guo4.5k
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Forum: Genetic linkage analysis software tools and comparison
... Here, we hope to talk about the comparison between different genetic linkage analysis software tools. Several years ago, I used ***Merlin*** to do linkage analysis to a NGS genome-wide SNP dataset (family data). Now, I tried to apply some other genetic linkage analysis software tools and hope to kno ...
forum linkage analysis genetic written 4 weeks ago by Shicheng Guo4.5k
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Tool: Multiplex PCR Primer Design Tools
... This page were applied to list all the computational tools for multiplex PCR primer design for Oligo Design for Multiplex PCR & High Throughput SNP/RNA/BSP and Analysis. 1, http://www.premierbiosoft.com/primerplex/index.html 2, https://omictools.com/msre-htprimer-tool 3, https://omictools.co ...
tools multiplex pcr tool written 4 weeks ago by Shicheng Guo4.5k • updated 4 weeks ago by genomax33k
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Comment: C: TF motif binding region searching script in human genome
... Yes. It is exactly what I need. Thanks. ...
written 3 months ago by Shicheng Guo4.5k
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6 follow
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TF motif binding region searching script in human genome
... Hi All, I have one interest TF and its motif sequence is known (both logo and frequency matrix) and I want to identify all the related genomic regions. Is there any Perl, R or Python script to share? You can find that the perl script works perfect. therefore, I suggest you to use perl script. b ...
motif logo written 3 months ago by Shicheng Guo4.5k
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Comment: C: Phred score check for BAM files
... I hope to achieve the phred score from bam files which download from public database with this script. ...
written 3 months ago by Shicheng Guo4.5k
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Comment: C: How to provide re-analysis link to previous dataset in GEO page
... GEO (least 20 characters) ...
written 4 months ago by Shicheng Guo4.5k
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How to provide re-analysis link to previous dataset in GEO page
... Suppose I want to upload some of my own dataset with some GEO provious dataset. In order to keep all these data tracked, How can I also provide the corresponding links to these pre-existed GEO dataset? Just like this page: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE46644 I also want t ...
geo written 4 months ago by Shicheng Guo4.5k • updated 4 months ago by igor4.5k
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Answer: A: SRX from SRR IDs
... I can share my perl script to collect SRR and SRX information together. You can make further adoption #!/usr/bin/perl -w # A perl script to build config file for SRS Bam Merge # Version 1.3 # Go to http://sra.dnanexus.com/studies/SRP028600/samples # Select SRS and Click Re ...
written 4 months ago by Shicheng Guo4.5k
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Phred score check for BAM files
... Hi All, I finish a perl script to check the phred score for bam files. I just want to make sure there is no bugs in it. Thanks. > Usage: perl bam2phred.pl input.bam #!/usr/bin/perl use strict; if ($ARGV[0] =~ /^-[h?]/) { print "Usage: determine-phred FILE Reads a ...
33 score bam phred 64 written 4 months ago by Shicheng Guo4.5k • updated 4 months ago by Biostar ♦♦ 20

Latest awards to Shicheng Guo

Popular Question 10 weeks ago, created a question with more than 1,000 views. For Relationship table between SRX and SRR in SRA database
Librarian 10 weeks ago, created a post with more than 10 bookmarks. For Good Habit for Bioinformatics Analyst or Scientist
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Relationship table between SRX and SRR in SRA database
Popular Question 3 months ago, created a question with more than 1,000 views. For Relationship table between SRX and SRR in SRA database
Popular Question 3 months ago, created a question with more than 1,000 views. For Relationship table between SRX and SRR in SRA database
Student 3 months ago, asked a question with at least 3 up-votes. For Converting Phred64 fastq to Phred33 fastq
Student 3 months ago, asked a question with at least 3 up-votes. For Converting Phred64 fastq to Phred33 fastq
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: What is a typical workflow to correlate methylation and expression data?
Appreciated 3 months ago, created a post with more than 5 votes. For A: What is a typical workflow to correlate methylation and expression data?
Popular Question 3 months ago, created a question with more than 1,000 views. For Relationship table between SRX and SRR in SRA database
Popular Question 4 months ago, created a question with more than 1,000 views. For Relationship table between SRX and SRR in SRA database
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: error in running R
Popular Question 5 months ago, created a question with more than 1,000 views. For Relationship table between SRX and SRR in SRA database
Great Question 5 months ago, created a question with more than 5,000 views. For Protocol To Downlad TCGA Data From GDC
Popular Question 5 months ago, created a question with more than 1,000 views. For bedGraphToBigWig Tutorial and Report
Popular Question 7 months ago, created a question with more than 1,000 views. For How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
Gold Standard 7 months ago, created a post with more than 25 bookmarks. For Good Habit for Bioinformatics Analyst or Scientist
Popular Question 7 months ago, created a question with more than 1,000 views. For fastq-dump split-spot and skip-technical
Popular Question 7 months ago, created a question with more than 1,000 views. For fastq-dump split-spot and skip-technical
Popular Question 9 months ago, created a question with more than 1,000 views. For fastq-dump split-spot and skip-technical
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: error in running R
Student 10 months ago, asked a question with at least 3 up-votes. For Definition and formula of methylation heterogeneity
Popular Question 10 months ago, created a question with more than 1,000 views. For fastq-dump split-spot and skip-technical
Popular Question 10 months ago, created a question with more than 1,000 views. For Gallery: Computational tools for DNA methylation
Popular Question 10 months ago, created a question with more than 1,000 views. For Fold change > 2 and P-value<0.05 in micro-array differential analysis

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