User: Shicheng Guo
Shicheng Guo • 8.5k
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Posts by Shicheng Guo
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... Nope! What about you? ...
written 2 days ago by
Shicheng Guo • 8.5k
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3
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3.8k
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3
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Answer:
A: Prediction Of Mutation Impact
... AlphaFold V2 increase protein 3D structure prediction accuracy to next level (~90%). AlphaFold received a very high score which is around 90, even for some worst situation, distance score test come up to 80+. You can try to take genetic variants into the model and check what will happen to the new 3 ...
written 27 days ago by
Shicheng Guo • 8.5k
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201
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... [Data-Field 5986][1] has 114 array. How to figure out how these 114 array are generated?
5,758,563 items of data are available, covering 95,140 participants.
Defined-instances run from 0 to 1, labelled using Instancing 2.
Array indices run from 0 to 113.
Units of measurement are seconds
Thanks Sa ...
written 27 days ago by
Shicheng Guo • 8.5k
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165
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1
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Answer:
A: compare two GWAS results
... Create a mirrored Manhattan plot using GWAS data
https://github.com/anastasia-lucas/hudson
![enter image description here][1]
[1]: https://camo.githubusercontent.com/911f78e8b1ad866b4cc382ecc2c4540d3911c17ab2eda40793ae0e5a8659efa7/68747470733a2f2f692e696d6775722e636f6d2f394c794b5069352e706e67 ...
written 7 weeks ago by
Shicheng Guo • 8.5k
10
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162
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6 follow
1
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... Hi All,
Do we have timeline for human hg39 genome? I ask these questions because I have lots of hg37 data need to transfer to hg38, but I am wondering if hg39 come out soon, then I think I can wait for hg39 version.
Thanks ...
written 7 weeks ago by
Shicheng Guo • 8.5k
• updated
7 weeks ago by
Pierre Lindenbaum ♦ 133k
2
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... Hi All,
How to understand the structural variation with bedpe format?
For example, the first one is duplication, how to know which region is duplicated ? how many duplicates happened?
what does start1 and end1 mean? why they are always having 1b difference?
chrom1 start1 end1 chrom2 start ...
written 8 weeks ago by
Shicheng Guo • 8.5k
0
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1.6k
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... any update to the question? ...
written 8 weeks ago by
Shicheng Guo • 8.5k
0
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1
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137
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1
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... downloaded the data from dbGAP and find the data is mess. ...
written 8 weeks ago by
Shicheng Guo • 8.5k
0
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0
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151
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... Hi All,
I want to check the developmental gene expression pattern for some genes of interest. For example, the changes of gene expression pattern in infant, young, adult and old age stage.
Thanks. ...
written 8 weeks ago by
Shicheng Guo • 8.5k
0
votes
1
answer
1.0k
views
1
answers
... Hi genomax, do you know how to access individual-level Million veterans project data? ...
written 9 weeks ago by
Shicheng Guo • 8.5k
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For trim_galore and cutadapt to paired-end DNA sequencing
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For Biomarker for Cancer TNM Stage
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For A: Area under the ROC Curve for genetic data
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For Protocol To Downlad TCGA Data From GDC
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For A: What is a typical workflow to correlate methylation and expression data?
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For A: What is a typical workflow to correlate methylation and expression data?
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For Bismark: Minimum MAPQ threshold (MMT) and Minimum Phred threshold (MPT)
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For Bismark: Minimum MAPQ threshold (MMT) and Minimum Phred threshold (MPT)
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For Bismark: Minimum MAPQ threshold (MMT) and Minimum Phred threshold (MPT)
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For Bismark: Minimum MAPQ threshold (MMT) and Minimum Phred threshold (MPT)
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