User: Shicheng Guo
Shicheng Guo • 7.3k
- Reputation:
- 7,330
- Status:
- Trusted
- Location:
- Last seen:
- 17 hours ago
- Joined:
- 3 years, 6 months ago
- Email:
- s***********@hotmail.com
Posts by Shicheng Guo
<prev
• 515 results •
page 1 of 52 •
next >
0
votes
0
answers
120
views
0
answers
... Anyone have the candidate SNP list for Polygenic Risk Scores estimation for Lung Cancers?
Thanks. ...
written 20 days ago by
Shicheng Guo • 7.3k
• updated
5 days ago by
Biostar ♦♦ 20
0
votes
0
answers
138
views
0
answers
... Hi All,
I run a imputation and phasing with 'michigan imputation server' for exom-beadchip array data and I found some of genotyped SNPs in the exom-chip were lost in the output file. Is it common or I made some mistake in the option selection or others?
Thanks.
...
written 4 weeks ago by
Shicheng Guo • 7.3k
0
votes
0
answers
869
views
0
answers
... any updates after 2.2 years? ...
written 5 weeks ago by
Shicheng Guo • 7.3k
0
votes
1
answer
1.3k
views
1
answers
... Hi ATpoint, How to apply Aspera in Linux server? ...
written 5 weeks ago by
Shicheng Guo • 7.3k
0
votes
3
answers
20k
views
3
answers
... How about `Generate_SSD_SetID` function in `SKAT` R package?
library("SKAT")
SKAT.input<-Generate_SSD_SetID(File.Bed, File.Bim, File.Fam, File.SetID, File.SSD, File.Info)
SSD.INFO<-Open_SSD(File.SSD, File.Info)
SSD.INFO$nSample
SSD.INFO$nSets
Result.SKAT<-SKAT.SSD.A ...
written 6 weeks ago by
Shicheng Guo • 7.3k
0
votes
3
answers
20k
views
3
answers
... Missing genotypes can be imputed advance to avoid un-expected error. ...
written 6 weeks ago by
Shicheng Guo • 7.3k
0
votes
1
answer
1.1k
views
1
answers
Comment:
C: Finding SNPs in LD with GWAS hits
... The SNAP application has been taken down due to a lack of resources to support it and because the data sets used were increasingly dated since 2017
...
written 8 weeks ago by
Shicheng Guo • 7.3k
3
votes
1
answer
171
views
1
answers
... Only select tag-SNPs and run the relatedness2, the less SNPs you use, the faster it is.
```plink --vcf input.vcf --indep-pairwise 50 10 0.8 --recode vcf --out output
```
the third parameter 0.8 is R2 threshold. you can try 0.6 0.5 or different values to control the number of SNPs. `plink` is a sof ...
written 9 weeks ago by
Shicheng Guo • 7.3k
2
votes
2
answers
711
views
2
answers
... Simple bi-allelic SNPs without structure: `PLINK`
Coalescent approaches: `GENOME`
Forward-time approaches: `MetaSim` and `simuPop`
Resampling approaches: `Hapgen2`
...
written 9 weeks ago by
Shicheng Guo • 7.3k
2
votes
1
answer
533
views
1
answers
... Simple bi-allelic SNPs without structure: `PLINK`
Coalescent approaches: `GENOME`
Forward-time approaches: `MetaSim` and `simuPop`
Resampling approaches: `Hapgen2`
...
written 9 weeks ago by
Shicheng Guo • 7.3k
Latest awards to Shicheng Guo
Good Answer
4 days ago,
created an answer that was upvoted at least 5 times.
For A: How to change the default fold of the downloading sra data using prefetch ?
Appreciated
4 days ago,
created a post with more than 5 votes.
For bedGraphToBigWig Tutorial and Report
Popular Question
12 days ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Popular Question
28 days ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Popular Question
5 weeks ago,
created a question with more than 1,000 views.
For Multiplex PCR Primer Design Tools
Popular Question
5 weeks ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Popular Question
6 weeks ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Popular Question
6 weeks ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Great Question
7 weeks ago,
created a question with more than 5,000 views.
For Good Habit for Bioinformatics Analyst or Scientist
Great Question
7 weeks ago,
created a question with more than 5,000 views.
For fastq-dump split-spot and skip-technical
Popular Question
8 weeks ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Student
8 weeks ago,
asked a question with at least 3 up-votes.
For Definition and formula of methylation heterogeneity
Great Question
9 weeks ago,
created a question with more than 5,000 views.
For fastq-dump split-spot and skip-technical
Scholar
9 weeks ago,
created an answer that has been accepted.
For A: significant differential expressed gene validation
Popular Question
9 weeks ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Student
11 weeks ago,
asked a question with at least 3 up-votes.
For Public data access: Single-cell RNA-seq and Buck RNA-seq data
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Student
3 months ago,
asked a question with at least 3 up-votes.
For Public data access: Single-cell RNA-seq and Buck RNA-seq data
Appreciated
3 months ago,
created a post with more than 5 votes.
For A: What is a typical workflow to correlate methylation and expression data?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Vector NTI in Window 10
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1980 users visited in the last hour