User: Yuri

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Yuri1.5k
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Bethesda, MD
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5 years, 4 months ago
Joined:
8 years, 6 months ago
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Bioinformatics research of brain tumor, mostly with MATLAB.

Posts by Yuri

<prev • 49 results • page 1 of 5 • next >
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Comment: C: What Is A Good Strategy For Distributing Ngs Data From A Core Facility?
... +1 for aspera. Order of magnitude faster transfer comparing to ftp. ...
written 5.6 years ago by Yuri1.5k
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Comment: C: Mapping Y Chromosome Mutation Names And Dbsnp Ids
... Thanks a lot, very useful! ...
written 6.4 years ago by Yuri1.5k
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Answer: A: Genome Wide Plots In [R]
... I had a similar problem in the past. I had millions of whole genome points and i wanted to (1) show all the points, (2) save to PDF, (3) keep all text and lines as vector objects. The PDF (or AI) file with all the points was so heavy that it was almost impossible to work with. End up with the follow ...
written 6.5 years ago by Yuri1.5k
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Mapping Y Chromosome Mutation Names And Dbsnp Ids
... How to find corresponding dbSNP IDs (if exist, of course) for Y chromosome mutations summarized, for example, by The Y Chromosome Consortium here? (Or do you know a better list of mutations?) They can be used for haplogroups determination. I found a table in supplemental data of a recent article: ...
mutation snp written 6.5 years ago by Yuri1.5k • updated 6.5 years ago by Peixe530
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Comment: C: Distance Between The Genes.
... @Manu: Or may be |start-end|-1? If you want to count only intergenic bases. ...
written 6.6 years ago by Yuri1.5k
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Comment: C: Drawing Chromosome Ideogams With Data
... @maximilianh: Thanks! Sounds interesting. But i couldn't find any examples of the graphs. Do you know any? ...
written 6.8 years ago by Yuri1.5k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
... I like the last item. :) ...
written 7.3 years ago by Yuri1.5k
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Answer: A: Bio-Informatics Results Supporting Ongoing Evolution
... A new article with nice experimental data on bacterivorous protist species just came out in "Ecology Letters" (June 14, 2011): The paper: http://onlinelibrary.wiley.com/doi/10.1111/j.1461-0248.2011.01644.x/abstract Press release from Georgia Tech: http://www.gatech.edu/newsroom/release.html?nid=665 ...
written 7.3 years ago by Yuri1.5k
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Comment: C: Genomic Instability In Cancer
... Thank you, David. I do have experience working with Affymetrix SNP arrays (from 100K to SNP6), studying CNA profiles and recurrent aberrations. But I never seeing how to use those data to estimate and compare genomic instability. Many problems arise, mostly connected with samples quality and accurac ...
written 7.6 years ago by Yuri1.5k
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Comment: C: Genomic Instability In Cancer
... Tony, thank you for comments. You're right, ideally I meant to get a single number to characterize genomic instability. Or a way to visually compare samples for their genomic instability (for example, distributions of altered segments length). Your points were exactly the problems I faced with. ...
written 7.6 years ago by Yuri1.5k

Latest awards to Yuri

Voter 5.4 years ago, voted more than 100 times.
Supporter 5.4 years ago, voted at least 25 times.
Guru 5.4 years ago, received more than 100 upvotes.
Commentator 7.3 years ago, created a comment with at least 3 up-votes. For C: What Are The Most Common Stupid Mistakes In Bioinformatics?
Student 7.6 years ago, asked a question with at least 3 up-votes. For Genomic Instability In Cancer
Appreciated 7.6 years ago, created a post with more than 5 votes. For Genomic Instability In Cancer
Teacher 8.4 years ago, created an answer with at least 3 up-votes. For A: How To Turn A Som Into A Supervised Classifier?
Popular Question 8.4 years ago, created a question with more than 1,000 views. For How To Get Promoter Sequences For Human Genes?
Appreciated 8.4 years ago, created a post with more than 5 votes. For How To Get Promoter Sequences For Human Genes?
Student 8.4 years ago, asked a question with at least 3 up-votes. For How To Get Promoter Sequences For Human Genes?
Great Question 8.4 years ago, created a question with more than 5,000 views. For How To Get Promoter Sequences For Human Genes?
Good Question 8.4 years ago, asked a question that was upvoted at least 5 times. For How To Get Promoter Sequences For Human Genes?
Appreciated 8.4 years ago, created a post with more than 5 votes. For A: How Do You Manage Your Files & Directories For Your Projects ?
Teacher 8.4 years ago, created an answer with at least 3 up-votes. For A: How Do You Manage Your Files & Directories For Your Projects ?
Good Answer 8.4 years ago, created an answer that was upvoted at least 5 times. For A: How Do You Manage Your Files & Directories For Your Projects ?
Teacher 8.4 years ago, created an answer with at least 3 up-votes. For A: Info Needed Regarding Gene Id Conversion From Agilent To Others
Good Answer 8.5 years ago, created an answer that was upvoted at least 5 times. For A: How To Detect And Query Poly-Allelic Snps?
Teacher 8.5 years ago, created an answer with at least 3 up-votes. For A: How To Detect And Query Poly-Allelic Snps?
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: How To Detect And Query Poly-Allelic Snps?
Commentator 8.5 years ago, created a comment with at least 3 up-votes. For C: How To Map A Snp To A Gene Around +/- 60Kb ?
Good Question 8.5 years ago, asked a question that was upvoted at least 5 times. For What Do Different Bioinformatics Positions Mean?
Popular Question 8.5 years ago, created a question with more than 1,000 views. For What Do Different Bioinformatics Positions Mean?
Student 8.5 years ago, asked a question with at least 3 up-votes. For What Do Different Bioinformatics Positions Mean?
Appreciated 8.5 years ago, created a post with more than 5 votes. For What Do Different Bioinformatics Positions Mean?
Gold Standard 8.5 years ago, created a post with more than 25 bookmarks. For Drawing Chromosome Ideogams With Data

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