User: Maxime Lamontagne

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Location:
Québec
Website:
http://www.criucpq.ula...
Last seen:
31 minutes ago
Joined:
6 years, 2 months ago
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b*********@gmail.com

Posts by Maxime Lamontagne

<prev • 148 results • page 1 of 15 • next >
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Answer: A: literature review by a web server
... [IBioGuide][1] could hep you. [1]: https://www.advaitabio.com/ibioguide.html ...
written 2 days ago by Maxime Lamontagne1.9k
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Answer: A: logistic regression with PLINK
... Maybe the "--freq" command will give you this info. ...
written 9 days ago by Maxime Lamontagne1.9k
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Comment: C: Using Plink, get allele frequencies for a subset of individuals
... I gues one of your file is incorrectly formatted. If you want, I could take a quick look at them. ...
written 23 days ago by Maxime Lamontagne1.9k
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Comment: C: Using Plink, get allele frequencies for a subset of individuals
... Try this : ./plink --file /path/in_data --chr 1-22 --allow-extra-chr --keep NewFile.txt --make-bed --out Temp1 --allow-no-sex ./plink --bfile Temp1 --pheno /path/cases.txt --freq --out out_data_case --allow-no-sex ...
written 23 days ago by Maxime Lamontagne1.9k
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Answer: A: Using Plink, get allele frequencies for a subset of individuals
... Create a file with only the FID and IID of the subjects you want to keep (NewFile.txt). Then try this : ./plink --file /path/in_data --chr 1-22 --allow-extra-chr --keep NewFile.txt --pheno /path/cases.txt --freq --make-bed --out out_data_case ...
written 23 days ago by Maxime Lamontagne1.9k
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Answer: A: Convert SNPs from GrCh38 to 37
... Try UCSC LiftOver : https://genome.ucsc.edu/cgi-bin/hgLiftOver ...
written 4 weeks ago by Maxime Lamontagne1.9k
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Answer: A: How to get a unique target gene for each SNP from different chromosomes/genes in
... Try ANNOVAR (table_annovar.pl) : [http://annovar.openbioinformatics.org/en/latest/user-guide/startup/][1] [1]: http://annovar.openbioinformatics.org/en/latest/user-guide/startup/ ...
written 11 weeks ago by Maxime Lamontagne1.9k
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Answer: A: ANNOVAR - column description
... I found the meaning of these columns by downloading a Readme file from ExAC : > The loss-of-function Z score is highly correlated with gene length (r > = 0.57). This means that longer genes have higher (more intolerant) scores simply because we are more confident in their predictions. To > ...
written 11 weeks ago by Maxime Lamontagne1.9k
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ANNOVAR - column description
... Hi, I used ANNOVAR to annotate 1000 SNPs for a study. I've run the table_annovar.pl pipeline in the Quick Start-Up Guide page (http://annovar.openbioinformatics.org/en/latest/user-guide/startup/). In the output, I do not understand some columns and I can't find this information (pLi, pRec, pNul ...
annovar written 12 weeks ago by Maxime Lamontagne1.9k
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Answer: A: Feasible Annotation of 4 million unique SNPs
... I think ANNOVAR (http://annovar.openbioinformatics.org/en/latest/) could be useful. ...
written 3 months ago by Maxime Lamontagne1.9k

Latest awards to Maxime Lamontagne

Scholar 11 weeks ago, created an answer that has been accepted. For A: Plink MAF Calculation
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Snp Information From Ped File In Plink
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Plink: Quick Way To Combine Two Datasets Using Only Common Markers
Good Answer 6 months ago, created an answer that was upvoted at least 5 times. For A: Minor allele frequency calculation
Appreciated 7 months ago, created a post with more than 5 votes. For A: Snp Information From Ped File In Plink
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Snp Information From Ped File In Plink
Appreciated 13 months ago, created a post with more than 5 votes. For A: Snp Information From Ped File In Plink
Popular Question 13 months ago, created a question with more than 1,000 views. For How To Get Articles For A Snps List?
Popular Question 14 months ago, created a question with more than 1,000 views. For How To Get Articles For A Snps List?
Popular Question 16 months ago, created a question with more than 1,000 views. For Plotting Human Karyotype - Software
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Snp Information From Ped File In Plink
Appreciated 20 months ago, created a post with more than 5 votes. For A: Snp Information From Ped File In Plink
Good Answer 23 months ago, created an answer that was upvoted at least 5 times. For A: Minor allele frequency calculation
Epic Question 24 months ago, created a question with more than 10,000 views. For Bioinformatic Cartoon
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Post-Doctoral - Genomic Research Program On Cardio-Respiratory Diseases - Quebec City
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Snp Information From Ped File In Plink
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Plotting Human Karyotype - Software
Scholar 2.2 years ago, created an answer that has been accepted. For A: Plink MAF Calculation
Appreciated 2.5 years ago, created a post with more than 5 votes. For A: Snp Information From Ped File In Plink
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Plotting Human Karyotype - Software
Centurion 2.6 years ago, created 100 posts.
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: Snp Information From Ped File In Plink
Scholar 2.6 years ago, created an answer that has been accepted. For A: Minor allele frequency calculation
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: Snp Information From Ped File In Plink
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Plotting Human Karyotype - Software

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