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2
votes
1
reply
9.2k
views
Answer: A: Reformat minimac imputated files to plink file
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 2.3k
0
votes
2
replies
20k
views
Comment: C: Accounting for problem SNPS when merging multiple plink files
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 2.3k
8
votes
1
reply
20k
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Answer: A: Accounting for problem SNPS when merging multiple plink files
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 2.3k
0
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0
replies
2.4k
views
Answer: A: PLINK ERROR: ERROR: --ld-snp {marker} not found
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.3k
0
votes
0
replies
2.6k
views
Answer: A: functional analysis of intronic and neargene SNPs
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 2.3k
4
votes
1
reply
16k
views
Answer: A: Converting Between Impute2 And Ped/Map After Imputation - 1St Column Dashes Prob
updated 3.2 years ago by 38k • written 11.1 years ago by ★ 2.3k
2
votes
0
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11k
views
Answer: A: Flip Gwas Data To Positive Strand (Hg19 Build 37)
updated 3.3 years ago by 38k • written 8.9 years ago by ★ 2.3k
1
vote
0
replies
2.3k
views
Comment: C: MAF in QC of genetic association study
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
1
vote
2
replies
25k
views
Comment: C: Converting SNP from chr:pos to rs number using PLINK?
updated 3.3 years ago by 38k • written 7.0 years ago by ★ 2.3k
6
votes
3
replies
25k
views
Comment: C: Converting SNP from chr:pos to rs number using PLINK?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
4
votes
2
replies
25k
views
Comment: C: Converting SNP from chr:pos to rs number using PLINK?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
0
votes
1
reply
25k
views
Comment: C: Converting SNP from chr:pos to rs number using PLINK?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.3k
0
votes
0
replies
9.6k
views
Comment: C: Genome Wide Plots In [R]
updated 3.3 years ago by 38k • written 11.0 years ago by ★ 2.3k
0
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0
replies
4.9k
views
Comment: C: PLINK .bim file shows chromosome 0 on Affymetrix chip
updated 3.3 years ago by 38k • written 7.4 years ago by ★ 2.3k
0
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0
replies
13k
views
Comment: C: How To Extract Random Snps From Whole Genome Data?
updated 3.6 years ago by 38k • written 11.2 years ago by ★ 2.3k
5
votes
2
replies
13k
views
Answer: A: How To Extract Random Snps From Whole Genome Data?
updated 3.6 years ago by 38k • written 11.2 years ago by ★ 2.3k
1
vote
0
replies
30k
views
Answer: A: Bioinformatic Cartoon
updated 4.4 years ago by 70k • written 9.2 years ago by ★ 2.3k
1
vote
0
replies
3.8k
views
Comment: C: How to run PLINK from a personal computer
5.1 years ago by Maxime Lamontagne ★ 2.3k
0
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1
reply
3.8k
views
Comment: C: How to run PLINK from a personal computer
5.1 years ago by Maxime Lamontagne ★ 2.3k
0
votes
1
reply
4.9k
views
Comment: C: PLINK .bim file shows chromosome 0 on Affymetrix chip
5.3 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
2.6k
views
Comment: C: What people do with the probes that doesn't have any GENE SYMBOL in annotation d
5.3 years ago by Maxime Lamontagne ★ 2.3k
6
votes
2
replies
2.6k
views
Answer: A: What does people do with the probes that doesn't have any GENE SYMBOL in annotat
5.3 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
1.5k
views
Answer: A: literature review by a web server
5.4 years ago by Maxime Lamontagne ★ 2.3k
0
votes
0
replies
3.1k
views
Answer: A: logistic regression with PLINK
5.5 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
4.2k
views
Comment: C: Using Plink, get allele frequencies for a subset of individuals
5.5 years ago by Maxime Lamontagne ★ 2.3k
0
votes
0
replies
4.2k
views
Comment: C: Using Plink, get allele frequencies for a subset of individuals
5.5 years ago by Maxime Lamontagne ★ 2.3k
1
vote
2
replies
4.2k
views
Answer: A: Using Plink, get allele frequencies for a subset of individuals
5.5 years ago by Maxime Lamontagne ★ 2.3k
1
vote
0
replies
9.0k
views
Answer: A: Convert SNPs from GrCh38 to 37
5.5 years ago by Maxime Lamontagne ★ 2.3k
1
vote
0
replies
1.5k
views
Answer: A: How to get a unique target gene for each SNP from different chromosomes/genes in
5.6 years ago by Maxime Lamontagne ★ 2.3k
2
votes
3
replies
3.6k
views
ANNOVAR - column description
ANNOVAR
5.6 years ago by Maxime Lamontagne ★ 2.3k
2
votes
2
replies
3.6k
views
Answer: A: ANNOVAR - column description
5.6 years ago by Maxime Lamontagne ★ 2.3k
1
vote
1
reply
1.7k
views
Answer: A: Feasible Annotation of 4 million unique SNPs
5.7 years ago by Maxime Lamontagne ★ 2.3k
3
votes
0
replies
4.0k
views
Answer: A: How to make bed file for existing bim and fam file
5.8 years ago by Maxime Lamontagne ★ 2.3k
0
votes
1
reply
4.2k
views
Answer: A: Grep Position List
updated 5.8 years ago by 47k • written 5.8 years ago by ★ 2.3k
0
votes
0
replies
8.2k
views
Answer: A: Merge ped files in PLINK
6.1 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
3.1k
views
Comment: C: Sorted hetamap using R
6.1 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
6.0k
views
Comment: A: Mirror Manhattan Plot
6.2 years ago by Maxime Lamontagne ★ 2.3k
1
vote
1
reply
1.7k
views
Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
6.2 years ago by Maxime Lamontagne ★ 2.3k
1
vote
1
reply
1.7k
views
Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
6.2 years ago by Maxime Lamontagne ★ 2.3k
1
vote
1
reply
1.7k
views
Answer: A: Calculate pairwise LD for two given genomic loci (not rsIDs)?
6.2 years ago by Maxime Lamontagne ★ 2.3k
0
votes
0
replies
11k
views
Comment: C: PLINK 1.9 - Converting PED/MAP to BED/BIM/FAM with missing values
6.7 years ago by Maxime Lamontagne ★ 2.3k
2
votes
1
reply
5.6k
views
Answer: A: Plink --freq case-control output format
6.9 years ago by Maxime Lamontagne ★ 2.3k
0
votes
0
replies
5.5k
views
Comment: Comment: Trouble with PLINK's logistic regression analysis and covariates
updated 8 months ago by 38k • written 7.1 years ago by ★ 2.3k
0
votes
1
reply
5.5k
views
Answer: Answer: Trouble with PLINK's logistic regression analysis and covariates
updated 8 months ago by 38k • written 7.1 years ago by ★ 2.3k
0
votes
0
replies
5.5k
views
Comment: C: Trouble with PLINK's logistic regression analysis and covariates
7.1 years ago by Maxime Lamontagne ★ 2.3k
0
votes
1
reply
5.5k
views
Comment: Comment: Trouble with PLINK's logistic regression analysis and covariates
updated 8 months ago by 38k • written 7.1 years ago by ★ 2.3k
0
votes
0
replies
8.2k
views
Answer: A: PLINK --update-name command error due to multiple SNPs with same chr:pos but dif
7.2 years ago by Maxime Lamontagne ★ 2.3k
2
votes
1
reply
2.3k
views
Answer: Answer: MAF in QC of genetic association study
updated 10 months ago by 38k • written 7.2 years ago by ★ 2.3k
0
votes
0
replies
2.2k
views
Answer: Answer: How to find annotation file version from CDF file
updated 7 months ago by 38k • written 7.3 years ago by ★ 2.3k
0
votes
0
replies
4.0k
views
Comment: C: How to use 1000 Genomes data for LDheatmap package in R
7.3 years ago by Maxime Lamontagne ★ 2.3k
147 results • Page 1 of 3
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