Moderator: WouterDeCoster

gravatar for WouterDeCoster
Reputation:
30,160
Status:
Trusted
Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
7 hours ago
Joined:
2 years, 4 months ago
Email:
d*************@gmail.com

I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION and PromethION.

Posts by WouterDeCoster

<prev • 5,846 results • page 1 of 585 • next >
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Comment: C: Looking for a tool like fastq screen but for ONT data
... Take a look at https://www.biorxiv.org/content/early/2018/07/20/372474 ...
written 7 hours ago by WouterDeCoster30k
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Comment: C: miRNA-seq Trimmomatic adapter file
... I have adapted your title to make it more explicit. ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Checking for a specific file type
... Glad to help and welcome to biostars. Interesting guidelines for posting can be found in the following posts: - https://www.biostars.org/p/75548/ - https://www.biostars.org/p/179963/ - https://www.biostars.org/p/180013/ ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Germline genome ground truth sets
... Not exactly answering your question, but this paper is worth reading in this context: [A synthetic-diploid benchmark for accurate variant-calling evaluation][1]. [1]: https://www.nature.com/articles/s41592-018-0054-7 ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Cutadapt installation - user defined directory
... I don't really see why you would like to do that, but good luck. ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Checking for a specific file type
... Great, but you haven't accepted the answer of https://www.biostars.org/u/20598/, although I believe that he solved your issue. ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Cutadapt installation - user defined directory
... Why? ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Cutadapt installation - user defined directory
... Then you need virtual [environments][1]. Which you can make with conda. E.g.: conda create -n myenv cutadapt=1.13 source activate myenv [1]: https://conda.io/docs/user-guide/tasks/manage-environments.html ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Linux: Error in make bwa
... Please use `ADD COMMENT` or `ADD REPLY` to answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your reaction but as you can see it's not optimal. Adding an answer should only be used for providing a solution to the question asked. ...
written 1 day ago by WouterDeCoster30k
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Comment: C: Cutadapt installation - user defined directory
... In my opinion the easiest would be to just install cutadapt using bioconda and then symlink to that user-defined directory, but it's unclear why you would want to do so. This also doesn't seem to be a pure bioinformatics question, which might be more suitable for StackOverflow. ...
written 1 day ago by WouterDeCoster30k

Latest awards to WouterDeCoster

Scholar 1 day ago, created an answer that has been accepted. For A: add header with awk
Scholar 1 day ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Teacher 1 day ago, created an answer with at least 3 up-votes. For A: add header with awk
Scholar 3 days ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar 8 days ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar 11 days ago, created an answer that has been accepted. For A: Nanopore data and downstream anlysis
Scholar 11 days ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Teacher 12 days ago, created an answer with at least 3 up-votes. For A: add header with awk
Commentator 12 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 12 days ago, created an answer with at least 3 up-votes. For A: add header with awk
Teacher 15 days ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar 15 days ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Teacher 17 days ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar 17 days ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Commentator 24 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 28 days ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar 28 days ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?
Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: Stranger Things: unexpected limitations of popular tools
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar 6 weeks ago, created an answer that has been accepted. For A: How to extract forward and reverse primer coordinates for soft clipping?
Appreciated 6 weeks ago, created a post with more than 5 votes. For A: Stranger Things: unexpected limitations of popular tools
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?

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