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Moderator: WouterDeCoster

gravatar for WouterDeCoster
Reputation:
33,660
Status:
Trusted
Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
10 minutes ago
Joined:
2 years, 8 months ago
Email:
d*************@gmail.com

I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION and PromethION.

Posts by WouterDeCoster

<prev • 6,313 results • page 1 of 632 • next >
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Comment: C: How to compare two dataframes and extract the matching entries as a row?
... What have you tried? This seems like a quite basic R subsetting/dataframe slicing question, of which you can find plenty of solutions online. ...
written 2 hours ago by WouterDeCoster ♦ 34k
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Answer: A: Detection of mtDNA
... What if you would just align your reads, and then go on with those aligned to the mitochondrial genome? ...
written 7 hours ago by WouterDeCoster ♦ 34k
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Comment: C: Pipelines and pseudocodes
... I'd suggest starting with the [biopython cookbook and tutorial][1]. The solution to your problem is in there. [1]: http://biopython.org/DIST/docs/tutorial/Tutorial.html ...
written 7 hours ago by WouterDeCoster ♦ 34k
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Comment: C: Python Data Visualization Course. Last 3 spots left
... I regret that you haven't communicated about this earlier - because deleting those is not our policy if those promotions are ontopic. I'll raise this issue on our moderator slack group. We don't want to scare any contributors away like this - so I care. ...
written 7 hours ago by WouterDeCoster ♦ 34k
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Comment: C: Should I specialise in bioinformatics?
... What is the added value of including that link in your post? Seems like spam to me. ...
written 8 hours ago by WouterDeCoster ♦ 34k
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Comment: C: Python Data Visualization Course. Last 3 spots left
... Agreed - that would make most sense. ...
written 8 hours ago by WouterDeCoster ♦ 34k
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Comment: C: Python Data Visualization Course. Last 3 spots left
... The current policy is that everyone is free to promote courses, if they're "real" (so no scam) and ontopic (bioinformatics or related). ...
written 8 hours ago by WouterDeCoster ♦ 34k
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Comment: C: Too many contig after genome assembly with Spades
... Not a bioinformatics solution, but your assembly could greatly improve by adding some long read sequencing data from Oxford Nanopore or PacBio, of which the former (MinION) can be reasonably cheap to obtain. ...
written 1 day ago by WouterDeCoster ♦ 34k
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Comment: C: Split a sequence in a fastq file
... I'd recommend going through some sections of the [Biopython cookbook and tutorial][1]. That would put you on track on how to solve this and further questions about handling common file formats. While one-liners like the one of Pierre are pretty (and efficient) it would probably take me less time t ...
written 1 day ago by WouterDeCoster ♦ 34k
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Comment: C: Keep special character in a .txt file
... Hello mostafarafiepour! We believe that this post does not fit this site. You repeatedly do not show any effort in solving basic unix questions yourselves. For this reason we have closed your question. If you disagree please tell us why in a reply below, we'll be happy to talk about it. Cheer ...
written 1 day ago by WouterDeCoster ♦ 34k

Latest awards to WouterDeCoster

Commentator 19 hours ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 5 days ago, created an answer with at least 3 up-votes. For A: The order of part processions of RNA-Seq data
Scholar 5 days ago, created an answer that has been accepted. For A: The order of part processions of RNA-Seq data
Teacher 6 days ago, created an answer with at least 3 up-votes. For A: The order of part processions of RNA-Seq data
Scholar 6 days ago, created an answer that has been accepted. For A: The order of part processions of RNA-Seq data
Scholar 7 days ago, created an answer that has been accepted. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Commentator 7 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Scholar 9 days ago, created an answer that has been accepted. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Commentator 10 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Scholar 12 days ago, created an answer that has been accepted. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Scholar 14 days ago, created an answer that has been accepted. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Commentator 14 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 16 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Appreciated 16 days ago, created a post with more than 5 votes. For The ethics of sci-hub
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Teacher 17 days ago, created an answer with at least 3 up-votes. For A: macs2 conda installation problem
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Commentator 20 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 20 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 23 days ago, created an answer with at least 3 up-votes. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Scholar 23 days ago, created an answer that has been accepted. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Scholar 28 days ago, created an answer that has been accepted. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Scholar 4 weeks ago, created an answer that has been accepted. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to (and where) download Zebrafish Reference Genome (other than Ensembl or US
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