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Moderator: WouterDeCoster

gravatar for WouterDeCoster
Reputation:
21,740
Status:
Trusted
Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
7 hours ago
Joined:
1 year, 7 months ago
Email:
d*************@gmail.com

I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION.

Posts by WouterDeCoster

<prev • 4,323 results • page 1 of 433 • next >
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Comment: C: Kallisto rna seq tool
... Where did you find this would be the way to install kallisto? ...
written 8 hours ago by WouterDeCoster ♦ 22k
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Comment: C: Authorship conflict and resolution
... It could lead to retraction of your paper, or a corrigendum, in case the co-author would protest and disagree with being an author. ...
written 10 hours ago by WouterDeCoster ♦ 22k
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Comment: C: Looking for an article with data (a few samples) and codes available !
... You can use [-cough-][1] to access any paper you want. [1]: http://sci-hub.cc/ ...
written 1 day ago by WouterDeCoster ♦ 22k
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Answer: A: Any methods available to do QC analysis of Pacbio raw data??
... If the name of the package doesn't offend your sequencer you could use my tool [NanoPlot][1] which can be used for extracting various metrics from fastq and bam files and plotting those. It's -as you might have guessed- written for Oxford Nanopore sequencing data but I can't think of a reason that i ...
written 1 day ago by WouterDeCoster ♦ 22k
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Comment: C: Error when running edgeR
... I think you need the [tximport][1] package. [1]: https://bioconductor.org/packages/devel/bioc/vignettes/tximport/inst/doc/tximport.html ...
written 2 days ago by WouterDeCoster ♦ 22k
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Comment: C: Error when running edgeR
... I added code markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below: ![101010 Button][1] [1]: http://i66.tinypic.com/33kdnjt.png ...
written 2 days ago by WouterDeCoster ♦ 22k
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Comment: C: parsing problem (awk/bash/python/R)
... Correct me if I'm wrong, but this just looks like you would like to sort the file by the first column? ...
written 2 days ago by WouterDeCoster ♦ 22k
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Comment: C: Need help to add letter into matrix
... I added code markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below: ![101010 Button][1] [1]: http://i66.tinypic.com/33kdnjt.png ...
written 2 days ago by WouterDeCoster ♦ 22k
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Answer: A: Looking for an article with data (a few samples) and codes available !
... What about this paper: [Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown][1]. (If you can't get access to that publication, let me know and I'll -[cough][2]- help you.) [1]: http://www.nature.com/nprot/journal/v11/n9/full/nprot.2016.095.html [2]: ht ...
written 2 days ago by WouterDeCoster ♦ 22k
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Comment: C: Looking for an article with data (a few samples) and codes available !
... > Simply, It would be simple if you would specify a bit more what exactly you are looking for. ...
written 2 days ago by WouterDeCoster ♦ 22k

Latest awards to WouterDeCoster

Teacher 5 days ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Appreciated 6 days ago, created a post with more than 5 votes. For A: Stranger Things: unexpected limitations of popular tools
Scholar 10 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Teacher 10 days ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Teacher 11 days ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Commentator 11 days ago, created a comment with at least 3 up-votes. For C: secondaryFiles for bam: how to handle .bai or/and ^.bai ?
Scholar 11 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Scholar 12 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Commentator 13 days ago, created a comment with at least 3 up-votes. For C: secondaryFiles for bam: how to handle .bai or/and ^.bai ?
Scholar 13 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Scholar 15 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Scholar 15 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Appreciated 4 weeks ago, created a post with more than 5 votes. For Interesting bioinformatics blogs (2017 edition)
Appreciated 4 weeks ago, created a post with more than 5 votes. For DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Scholar 8 weeks ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Scholar 8 weeks ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Commentator 8 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Scholar 10 weeks ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
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