Moderator: WouterDeCoster
WouterDeCoster ♦ 30k
- Reputation:
- 30,160
- Status:
- Trusted
- Location:
- Belgium
- Website:
- https://gigabaseorgiga...
- Twitter:
- wouter_decoster
- Last seen:
- 7 hours ago
- Joined:
- 2 years, 4 months ago
- Email:
- d*************@gmail.com
I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION and PromethION.
Posts by WouterDeCoster
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... Take a look at https://www.biorxiv.org/content/early/2018/07/20/372474 ...
written 7 hours ago by
WouterDeCoster ♦ 30k
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... I have adapted your title to make it more explicit. ...
written 1 day ago by
WouterDeCoster ♦ 30k
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Comment:
C: Checking for a specific file type
... Glad to help and welcome to biostars. Interesting guidelines for posting can be found in the following posts:
- https://www.biostars.org/p/75548/
- https://www.biostars.org/p/179963/
- https://www.biostars.org/p/180013/
...
written 1 day ago by
WouterDeCoster ♦ 30k
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C: Germline genome ground truth sets
... Not exactly answering your question, but this paper is worth reading in this context: [A synthetic-diploid benchmark for accurate variant-calling evaluation][1].
[1]: https://www.nature.com/articles/s41592-018-0054-7 ...
written 1 day ago by
WouterDeCoster ♦ 30k
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... I don't really see why you would like to do that, but good luck. ...
written 1 day ago by
WouterDeCoster ♦ 30k
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C: Checking for a specific file type
... Great, but you haven't accepted the answer of https://www.biostars.org/u/20598/, although I believe that he solved your issue. ...
written 1 day ago by
WouterDeCoster ♦ 30k
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... Then you need virtual [environments][1]. Which you can make with conda.
E.g.:
conda create -n myenv cutadapt=1.13
source activate myenv
[1]: https://conda.io/docs/user-guide/tasks/manage-environments.html ...
written 1 day ago by
WouterDeCoster ♦ 30k
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Comment:
C: Linux: Error in make bwa
... Please use `ADD COMMENT` or `ADD REPLY` to answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your reaction but as you can see it's not optimal.
Adding an answer should only be used for providing a solution to the question asked. ...
written 1 day ago by
WouterDeCoster ♦ 30k
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... In my opinion the easiest would be to just install cutadapt using bioconda and then symlink to that user-defined directory, but it's unclear why you would want to do so.
This also doesn't seem to be a pure bioinformatics question, which might be more suitable for StackOverflow. ...
written 1 day ago by
WouterDeCoster ♦ 30k
Latest awards to WouterDeCoster
Scholar
1 day ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar
3 days ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar
8 days ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar
11 days ago,
created an answer that has been accepted.
For A: Nanopore data and downstream anlysis
Scholar
11 days ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Commentator
12 days ago,
created a comment with at least 3 up-votes.
For C: Bioinformatics freelancers needed
Teacher
15 days ago,
created an answer with at least 3 up-votes.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar
15 days ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Teacher
17 days ago,
created an answer with at least 3 up-votes.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar
17 days ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Commentator
24 days ago,
created a comment with at least 3 up-votes.
For C: Bioinformatics freelancers needed
Teacher
28 days ago,
created an answer with at least 3 up-votes.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar
28 days ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Commentator
5 weeks ago,
created a comment with at least 3 up-votes.
For C: Bioinformatics freelancers needed
Teacher
5 weeks ago,
created an answer with at least 3 up-votes.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Good Answer
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For A: Stranger Things: unexpected limitations of popular tools
Scholar
5 weeks ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Teacher
6 weeks ago,
created an answer with at least 3 up-votes.
For A: How to extract forward and reverse primer coordinates for soft clipping?
Scholar
6 weeks ago,
created an answer that has been accepted.
For A: How to extract forward and reverse primer coordinates for soft clipping?
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created a post with more than 5 votes.
For A: Stranger Things: unexpected limitations of popular tools
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6 weeks ago,
created an answer with at least 3 up-votes.
For A: How to extract forward and reverse primer coordinates for soft clipping?
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