Moderator: WouterDeCoster

gravatar for WouterDeCoster
Reputation:
15,900
Status:
Trusted
Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
5 hours ago
Joined:
1 year, 1 month ago
Email:
d*************@gmail.com

I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION.

Posts by WouterDeCoster

<prev • 3,260 results • page 1 of 326 • next >
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Comment: C: Best way to processing huge fasta files using python.
... You are right indeed. ...
written 5 hours ago by WouterDeCoster16k
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Comment: C: position of each codon and anti codon on transcriptome
... It's not completely clear what the input data is you have and what you aim to obtain. Can you please elaborate? ...
written 1 day ago by WouterDeCoster16k
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Answer: A: What is ploidy level for HaplotypeCaller ?
... Humans are diploid, so ploidy = 2, which is the default setting so you don't have to specify this. ...
written 1 day ago by WouterDeCoster16k
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Comment: C: Error encountered while running stattest from ballgown package
... I can understand why you would post it on both biostars and bioconductor support, but at least be honest and mention that. My first test would be to simplify the design and drop the 'variety' column and see if the error is reproduced. I think your design doesn't allow estimation of 'influence' of t ...
written 1 day ago by WouterDeCoster16k
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Answer: A: Reads length Distribution of ONT reads and Error rate
... It's impossible to make an accurate statement about the distribution of read lengths, since these are dependent on the length of the input DNA and how careful you treat the library. With the most common library prep you have reads of 6-10kb, with a long tail up to ~200kb. However, with an adapted ...
written 1 day ago by WouterDeCoster16k
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Comment: C: Error encountered while running stattest from ballgown package
... Would be nice to mention that you crossposted this to https://support.bioconductor.org/p/95379/ Cross-posting is discouraged, because as such two communities will spend time trying to help you. ...
written 1 day ago by WouterDeCoster16k
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Comment: C: Error encountered while running stattest from ballgown package
... Is your design correct? By looking at the ids you use, I think it's supposed to be: ids treatment variety 1 112-C control **112** 2 112-S stress 112 3 111-C control 111 4 111-S stress 111 ...
written 1 day ago by WouterDeCoster16k
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Comment: C: Heart Rate Variability of Asthma data for Research requirement
... Hello trminhthanhbuu04! We believe that this post does not fit the main topic of this site. Question not related to bioinformatics For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell u ...
written 1 day ago by WouterDeCoster16k
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Comment: C: StackExchange/Area51 bioinformatics is back
... Sounds like a good suggestion, but it doesn't guarantee that new users will really read it. Do you accept the terms and conditions? Whether it's practically feasible is a question for Istvan. ...
written 1 day ago by WouterDeCoster16k
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Comment: C: Interesting bioinformatics blogs (2017 edition)
... I hadn't come across that blog earlier. I've added it to my list above (and started following the blog too). Looks very interesting indeed! Thanks for your suggestion. > I know the blog is not from a PI or major name in the field That's irrelevant ;-) ...
written 1 day ago by WouterDeCoster16k

Latest awards to WouterDeCoster

Scholar 1 day ago, created an answer that has been accepted. For A: how can I obtain benign / neutral snps?
Prophet 2 days ago, created a post with more than 20 followers. For Interesting bioinformatics blogs (2017 edition)
Commentator 5 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 5 days ago, created an answer with at least 3 up-votes. For A: What tools were used to draw these phylogenetic trees?
Scholar 8 days ago, created an answer that has been accepted. For A: how can I obtain benign / neutral snps?
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: What does + stand for in sequence alignment (blastp)?
Commentator 9 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Appreciated 9 days ago, created a post with more than 5 votes. For A: What tools were used to draw these phylogenetic trees?
Commentator 9 days ago, created a comment with at least 3 up-votes. For C: GTF format that's acceptable for Tophat/Cufflinks
Teacher 17 days ago, created an answer with at least 3 up-votes. For A: What does + stand for in sequence alignment (blastp)?
Scholar 17 days ago, created an answer that has been accepted. For A: how can I obtain benign / neutral snps?
Commentator 23 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: What does + stand for in sequence alignment (blastp)?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: What does + stand for in sequence alignment (blastp)?
Scholar 6 weeks ago, created an answer that has been accepted. For A: how can I obtain benign / neutral snps?
Commentator 6 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Scholar 6 weeks ago, created an answer that has been accepted. For A: how can I obtain benign / neutral snps?
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: What does + stand for in sequence alignment (blastp)?

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