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Moderator: WouterDeCoster

gravatar for WouterDeCoster
Reputation:
43,420
Status:
Trusted
Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
an hour ago
Joined:
4 years, 2 months ago
Email:
d*************@gmail.com

I am a postdoctoral researcher and research associate at the Center for Molecular Neurology, University of Antwerp & VIB, focussing on the analysis of sequencing data with the aim of identifying variants relevant to neurodegenerative diseases, and mainly structural variants using long read PromethION sequencing.

Posts by WouterDeCoster

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Comment: C: Problem to start Breakdancer
... > SV reading of my genome? It's your own genome? And you are going to dive into the data when you can't run a very basic command? With all respect, but that's highly irresponsible. You need someone with more experience. You can do whatever the hell you want with your own genome, but what do you ...
written 12 hours ago by WouterDeCoster ♦ 43k
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Comment: C: Interview presentation for postdoc
... The number of slides vs minutes depends entirely on your style, I guess. My slides usually have 5 or fewer words on them, the rest is graphs or pictures, and I usually have more slides than minutes. ...
written 3 days ago by WouterDeCoster ♦ 43k
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Comment: C: how to get fasta files for list of genes?
... > I am using window Please mention this from the beginning in your next questions. By using windows you are making things harder for yourself (because fewer tools are available) and for us (because most of us don't use windows for bioinformatics). ...
written 6 days ago by WouterDeCoster ♦ 43k
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Comment: C: how to run a tool (package) installed into anaconda environment ..using mac
... > So I think I need to go through the trimmomatic guide to more understand these terms. Yes, that's usually the best idea to start there before diving in trying out a new tool. ...
written 10 days ago by WouterDeCoster ♦ 43k
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Comment: C: Wild-Type and database SNPs effect
... All humans are equally wild. There is no such thing as wild-type for human variants. You can have the reference allele, which is the one that arbitrarily ended up in the reference genome, or you could think about selecting the most common allele in the population (either global or local). ...
written 10 days ago by WouterDeCoster ♦ 43k
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Comment: C: Finding enhancers of the whole human body
... Are you sure that makes biological sense? After all, a lot of regulation is tissue-specific. ...
written 10 days ago by WouterDeCoster ♦ 43k
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Comment: C: how to run a tool (package) installed into anaconda environment ..using mac
... > but no code could run the tool!!! What does that mean? Which error message did you get? You will have to be more specific if you expect help. What is the output of `conda list`? ...
written 10 days ago by WouterDeCoster ♦ 43k
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Comment: C: how to run a tool (package) installed into anaconda environment ..using mac
... After installation with conda you should just run `trimmomatic` rather than `java -jar etc` ...
written 11 days ago by WouterDeCoster ♦ 43k
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Comment: C: What's the probability of genotype error at the end of 10 repeated A variants? G
... I guess for many applications variants in homopolymer runs like this are best removed. They could be real, but with the evidence you have there is no way to tell and they are very often false positive. ...
written 11 days ago by WouterDeCoster ♦ 43k
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Answer: A: how to run a tool (package) installed into anaconda environment ..using mac
... After installation with conda the executable is named `trimmomatic`. ...
written 11 days ago by WouterDeCoster ♦ 43k

Latest awards to WouterDeCoster

Teacher 19 days ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Scholar 19 days ago, created an answer that has been accepted. For A: hg19 exon, intron, UTR region
Commentator 28 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Commentator 7 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Good Answer 7 weeks ago, created an answer that was upvoted at least 5 times. For A: Merging multiple vcfs with GATK's CombineVariants
Appreciated 8 weeks ago, created a post with more than 5 votes. For The ethics of sci-hub
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Popular Question 3 months ago, created a question with more than 1,000 views. For dbSNP Batch Query service will be discontinued June 2018: alternatives?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Appreciated 3 months ago, created a post with more than 5 votes. For methplotlib: visualization and analysis of modified nucleotides from nanopore sequencing
Scholar 3 months ago, created an answer that has been accepted. For A: hg19 exon, intron, UTR region
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: Merging multiple vcfs with GATK's CombineVariants
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Scholar 4 months ago, created an answer that has been accepted. For A: hg19 exon, intron, UTR region
Popular Question 4 months ago, created a question with more than 1,000 views. For DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Merging multiple vcfs with GATK's CombineVariants
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Merging multiple vcfs with GATK's CombineVariants
Appreciated 4 months ago, created a post with more than 5 votes. For A: Merging multiple vcfs with GATK's CombineVariants
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