Moderator: WouterDeCoster

gravatar for WouterDeCoster
Reputation:
35,390
Status:
Trusted
Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
5 hours ago
Joined:
2 years, 10 months ago
Email:
d*************@gmail.com

I am a research associate at the Center for Molecular Neurology, University of Antwerp & VIB, focussing on analysis of sequencing data with the aim of identifying variants relevant to neurodegenerative diseases, and mainly structural variants using long read PromethION sequencing.

Posts by WouterDeCoster

<prev • 6,578 results • page 1 of 658 • next >
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Comment: C: Cross-platform Assembly (PacBio & Ion Torrent)
... The term you are looking for is a "hybrid assembly". Using that for googling will give you plenty of hits. ...
written 8 hours ago by WouterDeCoster35k
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Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
... Yes. You filter the obtained RPKM counts to only keep genes with expression above that cut-off. ...
written 16 hours ago by WouterDeCoster35k
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Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
... Those which have their RPKM/FPKM above a certain threshold are considered "expressed". ...
written 16 hours ago by WouterDeCoster35k
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Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
... See for example this blog post: https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/ ...
written 17 hours ago by WouterDeCoster35k
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Comment: C: find data examples to practice INSeq analysis
... I converted your post to a "Question" (because that's what it is) and shortened the title to make it more concise. ...
written 17 hours ago by WouterDeCoster35k
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Comment: C: Combining two rnaseq platforms in one
... > I want to merge two platforms to have 3700 genes together. Probably important to state what the aim of your downstream analysis is. ...
written 18 hours ago by WouterDeCoster35k
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Comment: C: What can be done to separate the healthy and patient samples in PCA plot and Dis
... https://www.biostars.org/p/309884/ ...
written 20 hours ago by WouterDeCoster35k
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Comment: C: How to merge several FPKM files?
... Both cufflinks and FPKM are NOT recommended anymore. What is the aim of your analysis? ...
written 20 hours ago by WouterDeCoster35k
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Comment: C: AfterQC what is the reason killed
... > 250 gb SSD but as i know Afterqc needs just 4 gb You are confusing RAM with hard disk. Your error message is incomplete. ...
written 20 hours ago by WouterDeCoster35k
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Comment: C: for loop over bwa aln
... Put an echo in your loop to see how it looks like: for i in $(cat READ1_list | sed s'/\-READ1.fastq.gz//' | sort) do echo "bwa sampe reference/reference.unaligned.fasta $i\-READ1.sai $i\-READ2.sai $i\-READ1.fastq.gz $i\-READ2.fastq.gz \ | samtools view -bS - > $i\-pe.bam" ...
written 20 hours ago by WouterDeCoster35k

Latest awards to WouterDeCoster

Commentator 3 days ago, created a comment with at least 3 up-votes. For C: Plot number of mutations in each cancer type in VCF files?
Teacher 5 days ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Commentator 6 days ago, created a comment with at least 3 up-votes. For C: Plot number of mutations in each cancer type in VCF files?
Teacher 7 days ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Scholar 15 days ago, created an answer that has been accepted. For A: The order of part processions of RNA-Seq data
Commentator 22 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 25 days ago, created a comment with at least 3 up-votes. For C: Plot number of mutations in each cancer type in VCF files?
Commentator 25 days ago, created a comment with at least 3 up-votes. For C: Plot number of mutations in each cancer type in VCF files?
Teacher 27 days ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Great Question 28 days ago, created a question with more than 5,000 views. For Interesting bioinformatics blogs (2017 edition)
Appreciated 28 days ago, created a post with more than 5 votes. For The ethics of sci-hub
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Scholar 5 weeks ago, created an answer that has been accepted. For A: The order of part processions of RNA-Seq data
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Scholar 5 weeks ago, created an answer that has been accepted. For A: The order of part processions of RNA-Seq data
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Commentator 6 weeks ago, created a comment with at least 3 up-votes. For C: Plot number of mutations in each cancer type in VCF files?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: mapping of rna seq read to reference seq
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: The order of part processions of RNA-Seq data
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: The order of part processions of RNA-Seq data
Commentator 6 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Commentator 7 weeks ago, created a comment with at least 3 up-votes. For C: Plot number of mutations in each cancer type in VCF files?

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