Moderator: WouterDeCoster

gravatar for WouterDeCoster
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27,990
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Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
2 hours ago
Joined:
2 years, 2 months ago
Email:
d*************@gmail.com

I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION and PromethION.

Posts by WouterDeCoster

<prev • 5,486 results • page 1 of 549 • next >
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Comment: C: How to set up a server for NGS analysis
... You need a lot of help to get this up, more than an online Q&A forum can offer. And it's off topic for biostars. You may have more luck on more specialised fora. ...
written 1 day ago by WouterDeCoster28k
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Comment: C: How to set up a server for NGS analysis
... Hello mjoyraj! We believe that this post does not fit the main topic of this site. Not related to bioinformatics For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply b ...
written 1 day ago by WouterDeCoster28k
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Answer: A: Align Reads from PacBio
... I suggest minimap2: https://github.com/lh3/minimap2 > and would it be possible to use something with a GUI? Nope, but a command line is not that bad and it's better to bite the bullet now and spend some time with it to get comfortable. You'll thank yourself in the future. ...
written 1 day ago by WouterDeCoster28k
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Comment: C: I get almost the same fastqc report for a fastq file before and after using Trim
... https://www.biostars.org/p/309884/ ...
written 1 day ago by WouterDeCoster28k
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Comment: C: Finding restriction sites when the gene is on the negative strand
... It usually helps your reasoning to draw, a chromosome, a gene in both directions, and the identified sites. ...
written 1 day ago by WouterDeCoster28k
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Comment: C: Example of processed RNASeq datasets
... [recount2][1] has a lot of processed count matrices for different phenotypes. It's not in RPKM, but that's not a good normalisation method anyway. [1]: https://jhubiostatistics.shinyapps.io/recount/ ...
written 1 day ago by WouterDeCoster28k
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Comment: C: output differents value between samtools depth and pysam
... If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted. ![Upvote|Bookmark|Accept][1] [1]: https://image.ibb.co/dfsqrx/upvote_accept_bookmark.png ...
written 1 day ago by WouterDeCoster28k
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Comment: C: plot the distribution
... Please select a more meaningful title for your question. In addition, see https://www.biostars.org/p/309884/ ...
written 1 day ago by WouterDeCoster28k
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Comment: C: Error for reading .gtf file in R
... I added code markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below: ![101010 Button][1] [1]: http://i66.tinypic.com/33kdnjt.png ...
written 1 day ago by WouterDeCoster28k
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Comment: C: Edit FASTA header to add organism name after the accession number using perl or
... Please use `ADD COMMENT` or `ADD REPLY` to answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your reaction but as you can see it's not optimal. Adding an answer should only be used for providing a solution to the question asked. If a ...
written 2 days ago by WouterDeCoster28k

Latest awards to WouterDeCoster

Teacher 8 days ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?
Appreciated 11 days ago, created a post with more than 5 votes. For Interesting bioinformatics blogs (2017 edition)
Teacher 11 days ago, created an answer with at least 3 up-votes. For A: How to extract forward and reverse primer coordinates for soft clipping?
Teacher 19 days ago, created an answer with at least 3 up-votes. For A: How to parallel task in bash elegantly?
Scholar 19 days ago, created an answer that has been accepted. For A: Nanopore data and downstream anlysis
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Scholar 29 days ago, created an answer that has been accepted. For A: Nanopore data and downstream anlysis
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Scholar 8 weeks ago, created an answer that has been accepted. For A: Nanopore data and downstream anlysis
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