Moderator: WouterDeCoster
WouterDeCoster ♦ 20k
- Reputation:
- 20,410
- Status:
- Trusted
- Location:
- Belgium
- Website:
- https://gigabaseorgiga...
- Twitter:
- wouter_decoster
- Last seen:
- 24 minutes ago
- Joined:
- 1 year, 5 months ago
- Email:
- d*************@gmail.com
I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION.
Posts by WouterDeCoster
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... Thanks for sharing the solution, but there is no need to close the thread. ...
written 1 hour ago by
WouterDeCoster ♦ 20k
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... > I'm not comfortable with R.
Eh, does one ever get comfortable with R?
Anyway, as far as I know: no, there is no Python implementation. And using R is not that bad since the documentation for this package is decent. ...
written 2 hours ago by
WouterDeCoster ♦ 20k
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Comment:
C: sequence in different line
... Exactly ;-)
[just some slight Friday night trolling] ...
written 3 hours ago by
WouterDeCoster ♦ 20k
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... Your question was rather broad and unclear. If you have more specific questions you will get more specific help. So feel free to come back (and open a new thread) when you need more help during your journey. But be as specific as possible. ...
written 5 hours ago by
WouterDeCoster ♦ 20k
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Comment:
C: sequence in different line
... Bah, I prefer:
sed -r 's|\s+|\n|' input >output ...
written 5 hours ago by
WouterDeCoster ♦ 20k
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Comment:
C: sequence in different line
... cat yourinput | tr '\t' '\n' > youroutput.fa
Although we can't see which whitespace is between your accession identifier and the actual sequence. ...
written 5 hours ago by
WouterDeCoster ♦ 20k
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... So essentially you are looking for a filtering strategy and tools to accomplish that? I think a tool such as [Gemini][1] might be useful for you.
[1]: https://gemini.readthedocs.io/en/latest/ ...
written 5 hours ago by
WouterDeCoster ♦ 20k
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... > how to target causative variant/gene/SNP/INDEL in Exome/seq data??
Do you mean how to identify causal mutations?
Please elaborate on your experimental setup (e.g. disease, the number of samples,...). ...
written 8 hours ago by
WouterDeCoster ♦ 20k
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... Well, then you can also tell "your colleagues" to remove those unnecessary upvotes. You are not helping yourself by gaming the system. ...
written 10 hours ago by
WouterDeCoster ♦ 20k
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... I'm not sure why this thread was deleted after it was answered... reopened.
If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted.
![Upvote|Bookmark|Accept][1]
[1]: http://i66.tinypic.com/14xdmh2.jpg
Welcome to biostars. Interesting gui ...
written 11 hours ago by
WouterDeCoster ♦ 20k
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