Moderator: WouterDeCoster

gravatar for WouterDeCoster
Reputation:
20,410
Status:
Trusted
Location:
Belgium
Website:
https://gigabaseorgiga...
Twitter:
wouter_decoster
Last seen:
24 minutes ago
Joined:
1 year, 5 months ago
Email:
d*************@gmail.com

I'm a PhD student at the University of Antwerp (VIB Center for Molecular Neurology) with a background in biochemistry. I mainly work on data generated by genome sequencing, exome sequencing, targeted resequencing, RNA-seq and Nanopore Sequencing using MinION.

Posts by WouterDeCoster

<prev • 4,092 results • page 1 of 410 • next >
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Comment: C: Working example for VCF visualization in Circos
... Thanks for sharing the solution, but there is no need to close the thread. ...
written 1 hour ago by WouterDeCoster20k
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Comment: C: Any implementation of the edgeR in python
... > I'm not comfortable with R. Eh, does one ever get comfortable with R? Anyway, as far as I know: no, there is no Python implementation. And using R is not that bad since the documentation for this package is decent. ...
written 2 hours ago by WouterDeCoster20k
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Comment: C: sequence in different line
... Exactly ;-) [just some slight Friday night trolling] ...
written 3 hours ago by WouterDeCoster20k
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Comment: C: Targeting causative variant in Exome-Sequence data
... Your question was rather broad and unclear. If you have more specific questions you will get more specific help. So feel free to come back (and open a new thread) when you need more help during your journey. But be as specific as possible. ...
written 5 hours ago by WouterDeCoster20k
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Comment: C: sequence in different line
... Bah, I prefer: sed -r 's|\s+|\n|' input >output ...
written 5 hours ago by WouterDeCoster20k
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Comment: C: sequence in different line
... cat yourinput | tr '\t' '\n' > youroutput.fa Although we can't see which whitespace is between your accession identifier and the actual sequence. ...
written 5 hours ago by WouterDeCoster20k
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Comment: C: Targeting causative variant in Exome-Sequence data
... So essentially you are looking for a filtering strategy and tools to accomplish that? I think a tool such as [Gemini][1] might be useful for you. [1]: https://gemini.readthedocs.io/en/latest/ ...
written 5 hours ago by WouterDeCoster20k
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Comment: C: Targeting causative variant in Exome-Sequence data
... > how to target causative variant/gene/SNP/INDEL in Exome/seq data?? Do you mean how to identify causal mutations? Please elaborate on your experimental setup (e.g. disease, the number of samples,...). ...
written 8 hours ago by WouterDeCoster20k
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Comment: C: Getting error in running GATK (GenomeAnalysisTK-3.7)?
... Well, then you can also tell "your colleagues" to remove those unnecessary upvotes. You are not helping yourself by gaming the system. ...
written 10 hours ago by WouterDeCoster20k
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Comment: C: readcufflinks shows error in R cummeRbund Package
... I'm not sure why this thread was deleted after it was answered... reopened. If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted. ![Upvote|Bookmark|Accept][1] [1]: http://i66.tinypic.com/14xdmh2.jpg Welcome to biostars. Interesting gui ...
written 11 hours ago by WouterDeCoster20k

Latest awards to WouterDeCoster

Scholar 3 hours ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Commentator 4 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Scholar 8 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Teacher 15 days ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Commentator 22 days ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Scholar 29 days ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Popular Question 4 weeks ago, created a question with more than 1,000 views. For Interesting bioinformatics blogs (2017 edition)
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Stranger Things: unexpected limitations of popular tools
Scholar 4 weeks ago, created an answer that has been accepted. For A: How to add single gene name in volcano plot ?
Scholar 5 weeks ago, created an answer that has been accepted. For A: generating midpoints on a bedfile
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Is there any way to install RStudio (or any other powerful IDE for R) without ro
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Is there any way to install RStudio (or any other powerful IDE for R) without ro
Scholar 5 weeks ago, created an answer that has been accepted. For A: generating midpoints on a bedfile
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Genes responsible for cancers
Scholar 5 weeks ago, created an answer that has been accepted. For A: generating midpoints on a bedfile
Scholar 5 weeks ago, created an answer that has been accepted. For A: generating midpoints on a bedfile
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Genes responsible for cancers
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Genes responsible for cancers
Scholar 7 weeks ago, created an answer that has been accepted. For A: generating midpoints on a bedfile
Scholar 7 weeks ago, created an answer that has been accepted. For C: How to extract trinity gene id
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Genes responsible for cancers
Scholar 8 weeks ago, created an answer that has been accepted. For A: how can I obtain benign / neutral snps?
Commentator 8 weeks ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Genes responsible for cancers

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