Moderator: Jeremy Leipzig
Jeremy Leipzig ♦ 18k
- Reputation:
- 17,550
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- Trusted
- Location:
- Philadelphia, PA
- Website:
- http://jermdemo.blogsp...
- Twitter:
- jermdemo
- Scholar ID:
- Google Scholar Page
- Last seen:
- 38 minutes ago
- Joined:
- 8 years, 9 months ago
- Email:
- l******@gmail.com
I am a bioinformatics software developer known mostly for my posts on big-ass servers, damn microarray papers, and the reproducible research guilt trip, as well as my review of pipeline frameworks. I have worked in virology, crop genomics, and on various pediatric diseases as a programmer, analyst, and architect. I'm currently a PhD student at Drexel.
Posts by Jeremy Leipzig
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Comment:
C: Cutadapt Or Fastx Clipper
... added recent entries trimmomatic (2014) and fastp (2018) ...
written 13 days ago by
Jeremy Leipzig ♦ 18k
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... > Databasing of Patients, Samples, NGS Experiments, Bioinformatics
> Applications, Analyses Results, or more
yeah TransMart I2B2
> Comprenhensive RESTful API with documentation
http://intermine.org ?
> NGS Assets Management (Permissions, Storage, Tracking)
sounds LIMS-y
> Automa ...
written 19 days ago by
Jeremy Leipzig ♦ 18k
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Comment:
C: Detection of mtDNA
... Why would this be when mitochondria outnumber autosomal chromosomes in each cell by several thousand X? ...
written 21 days ago by
Jeremy Leipzig ♦ 18k
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... Seems unlikely that Panorama could sponsor a visa for a typical applicant but I would encourage anyone interested to apply anyway ...
written 21 days ago by
Jeremy Leipzig ♦ 18k
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... This is where I work but don't let that discourage you. It's a great opportunity! ...
written 24 days ago by
Jeremy Leipzig ♦ 18k
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... **Job description:**
Panorama Medicine is seeking an experienced RNA Computational Biologist with a strong RNA biology background to analyze large-scale RNA data at their Philadelphia office in the new CiC Building.
**Responsibilities:**
Analyze large-scale RNA-seq data.
Discover underlying mech ...
written 24 days ago by
Jeremy Leipzig ♦ 18k
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... I think you need to have zlib or libdeflate somewhere in your LD_LIBRARY_PATH (and the -lz option) ...
written 6 weeks ago by
Jeremy Leipzig ♦ 18k
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... Dr. Yi Xing’s lab (https://xinglab.org/) at the Children’s Hospital of Philadelphia (CHOP) and the University of Pennsylvania (Penn) has multiple openings for Bioinformatics Data Scientist or Postdoctoral Fellow. Our lab is broadly interested in computational biology and genomics of RNA processing a ...
written 7 weeks ago by
Jeremy Leipzig ♦ 18k
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27
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... this is a nim solution
import strutils
var
line: string
seqCnt = 0
charCnt = 0
proc main()=
for line in stdin.lines:
if line.startsWith('>'):
inc seqCnt
else:
charCnt += len(line)
echo (charCnt/seqCnt)
ma ...
written 9 weeks ago by
Jeremy Leipzig ♦ 18k
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... Is there a package that takes a phylogenetic tree and allows you to specify fixed and random effects by specifying a level of the tree, so everything above is random and everything below is fixed (or vice-versa)?
So if you have a homologous SNP in some distant species and some phenotypic measure, y ...
written 9 weeks ago by
Jeremy Leipzig ♦ 18k
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For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
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For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
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For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
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For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
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For C: Big Ass Servers & Storage
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For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
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For What are the best examples of sample naming conventions?
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For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
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For C: Big Ass Servers & Storage
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For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
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8 months ago,
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For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
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8 months ago,
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For C: Big Ass Servers & Storage
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8 months ago,
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For C: Big Ass Servers & Storage
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8 months ago,
created a post with more than 5 votes.
For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
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9 months ago,
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For A: Retrieve mutation position and ID for a mutation in hgvs format
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For A: How Much Does It Cost To Align A Flowcell In The Cloud?
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For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
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