Moderator: Jeremy Leipzig

gravatar for Jeremy Leipzig
Reputation:
16,180
Status:
Trusted
Location:
Philadelphia, PA
Website:
http://jermdemo.blogsp...
Scholar ID:
Google Scholar Page
Last seen:
13 hours ago
Joined:
6 years, 10 months ago
Email:
l******@gmail.com

Bioinformatics software developer working at a pediatric hospital.

Posts by Jeremy Leipzig

<prev • 757 results • page 1 of 76 • next >
2
votes
3
answers
559
views
3
answers
Comment: C: Example of how bioinformaticians can publish in Scientific Reports (by nature pu
... Right. Without source code this paper is certainly no example of reproducible research, even though being both *in silico* and based on public data, it was well suited to be an examplar. ...
written 17 days ago by Jeremy Leipzig16k
0
votes
3
answers
1.4k
views
3
answers
Answer: A: Bait/Target files for Picard HsMetrics (Exome Sequencing)
... cat nexterarapidcapture_exome_targetedregions_v1.2.bed | sed s/chr//g | sed s/M/MT/g > nexterarapidcapture_exome_targetedregions_v1.2.no_chr.MT.bed cat NexteraRapidCapture_Exome_Probes_v1.2.txt | grep CEX | sed -e 's/chrM/chrMT/g;s/chr//g;' | cut -f2,3,4 > NexteraRapidCapture_Exome_Pr ...
written 6 weeks ago by Jeremy Leipzig16k
0
votes
0
answers
2.2k
views
0
answers
Comment: C: Join us in building a bioinformatics resource: The Biostar Handbook
... I also feel there should be links to actual Biostars questions and tags at the bottom of each page. This handbook seems a bit divorced from Biostars as it stands. ...
written 11 weeks ago by Jeremy Leipzig16k
0
votes
1
answer
362
views
1
answers
Comment: C: How to analyze NGS data: An overview of nine different IT solutions
... it's probably wise to leave out examples - the whiners will come out in force claiming they have feature X or feature Y that makes the category meaningless ...
written 12 weeks ago by Jeremy Leipzig16k
0
votes
0
answers
2.2k
views
0
answers
Comment: C: Join us in building a bioinformatics resource: The Biostar Handbook
... OK so I will slowly provide replacements to the installation routines throughout this guide. By providing a universal means of specifying project dependencies, IMHO conda/bioconda have tremendous momentum in the bioinformatics community well outside of python. ...
written 12 weeks ago by Jeremy Leipzig16k
0
votes
0
answers
2.2k
views
0
answers
Comment: C: Join us in building a bioinformatics resource: The Biostar Handbook
... How would you feel if I replaced all the installation code with conda? Is that really less informative? ...
written 12 weeks ago by Jeremy Leipzig16k
0
votes
1
answer
2.3k
views
1
answers
Comment: C: Visualizing The Outputs Of Gatk/Depthofcoverage
... weird there are not more options for this as common as gatk is ...
written 3 months ago by Jeremy Leipzig16k
1
vote
2
answers
511
views
2
answers
Comment: C: edgeR and GO analysis using goana
... show us a snippet of mydata.txt ...
written 4 months ago by Jeremy Leipzig16k
1
vote
2
answers
196
views
2
answers
Comment: C: cutadapt does not keep sequences
... read the section on anchored 5' adapters http://cutadapt.readthedocs.io/en/stable/guide.html#anchored-5-adapters ...
written 4 months ago by Jeremy Leipzig16k
0
votes
1
answer
754
views
1
answers
Comment: C: Better for my career: Degree in computer science or Phd in bioinformatics?
... you are done with the MSc level. Don't repeat the BSc level in order to gain skills. That's an inefficient way to learn programming - just develop something on your own. ...
written 4 months ago by Jeremy Leipzig16k

Latest awards to Jeremy Leipzig

Popular Question 27 days ago, created a question with more than 1,000 views. For Is There A Convention For Representing Indels In Diploid Genome Sequences?
Student 6 weeks ago, asked a question with at least 3 up-votes. For Why Do Genbank And Refseq Have Different Coordinates For Mitochondrial Features?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How Much Does It Cost To Align A Flowcell In The Cloud?
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Making bioinformatics help and tutorials open
Scholar 4 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How Much Does It Cost To Align A Flowcell In The Cloud?
Appreciated 4 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Why Does Rna-Seq Read Count Fit Poisson Distribution?
Scholar 6 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Prophet 6 months ago, created a post with more than 20 followers. For Are There Websites Which Allow Users To Post Comments On Peer-Reviewed Articles?
Popular Question 6 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Popular Question 7 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Scholar 7 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Popular Question 7 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Appreciated 7 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: No Reads Ever Map To First 3Million Bases Of Chromosomes In Mouse Genome! Why?
Student 7 months ago, asked a question with at least 3 up-votes. For What Are The Most Common Stupid Mistakes In Bioinformatics?
Popular Question 9 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Popular Question 9 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Student 9 months ago, asked a question with at least 3 up-votes. For Is There A Convention For Representing Indels In Diploid Genome Sequences?
Good Answer 10 months ago, created an answer that was upvoted at least 5 times. For A: Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
Appreciated 10 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: No Reads Ever Map To First 3Million Bases Of Chromosomes In Mouse Genome! Why?
Scholar 10 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Appreciated 10 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 461 users visited in the last hour