Moderator: Jeremy Leipzig

gravatar for Jeremy Leipzig
Reputation:
17,550
Status:
Trusted
Location:
Philadelphia, PA
Website:
http://jermdemo.blogsp...
Twitter:
jermdemo
Scholar ID:
Google Scholar Page
Last seen:
38 minutes ago
Joined:
8 years, 9 months ago
Email:
l******@gmail.com

I am a bioinformatics software developer known mostly for my posts on big-ass serversdamn microarray papers, and the reproducible research guilt trip, as well as my review of pipeline frameworks. I have worked in virology, crop genomics, and on various pediatric diseases as a programmer, analyst, and architect. I'm currently a PhD student at Drexel.

Posts by Jeremy Leipzig

<prev • 829 results • page 1 of 83 • next >
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Comment: C: Cutadapt Or Fastx Clipper
... added recent entries trimmomatic (2014) and fastp (2018) ...
written 13 days ago by Jeremy Leipzig18k
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Answer: A: help identifying bioinformatics operations tools
... > Databasing of Patients, Samples, NGS Experiments, Bioinformatics > Applications, Analyses Results, or more yeah TransMart I2B2 > Comprenhensive RESTful API with documentation http://intermine.org ? > NGS Assets Management (Permissions, Storage, Tracking) sounds LIMS-y > Automa ...
written 19 days ago by Jeremy Leipzig18k
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Comment: C: Detection of mtDNA
... Why would this be when mitochondria outnumber autosomal chromosomes in each cell by several thousand X? ...
written 21 days ago by Jeremy Leipzig18k
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Comment: C: RNA Computational Biologist at Panorama Medicine in Philadelphia
... Seems unlikely that Panorama could sponsor a visa for a typical applicant but I would encourage anyone interested to apply anyway ...
written 21 days ago by Jeremy Leipzig18k
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Comment: C: RNA Computational Biologist at Panorama Medicine in Philadelphia
... This is where I work but don't let that discourage you. It's a great opportunity! ...
written 24 days ago by Jeremy Leipzig18k
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Job: RNA Computational Biologist at Panorama Medicine in Philadelphia
... **Job description:** Panorama Medicine is seeking an experienced RNA Computational Biologist with a strong RNA biology background to analyze large-scale RNA data at their Philadelphia office in the new CiC Building. **Responsibilities:** Analyze large-scale RNA-seq data. Discover underlying mech ...
job rna-seq written 24 days ago by Jeremy Leipzig18k
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Comment: C: Minimal example of using htslib from conda to build a simple c file?
... I think you need to have zlib or libdeflate somewhere in your LD_LIBRARY_PATH (and the -lz option) ...
written 6 weeks ago by Jeremy Leipzig18k
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Job: Bioinformatics Data Scientist and Postdoctoral Fellow - Xing lab @ CHOP
... Dr. Yi Xing’s lab (https://xinglab.org/) at the Children’s Hospital of Philadelphia (CHOP) and the University of Pennsylvania (Penn) has multiple openings for Bioinformatics Data Scientist or Postdoctoral Fellow. Our lab is broadly interested in computational biology and genomics of RNA processing a ...
splicing job rna-seq written 7 weeks ago by Jeremy Leipzig18k
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Answer: A: Mean Length Of Fasta Sequences
... this is a nim solution import strutils var line: string seqCnt = 0 charCnt = 0 proc main()= for line in stdin.lines: if line.startsWith('>'): inc seqCnt else: charCnt += len(line) echo (charCnt/seqCnt) ma ...
written 9 weeks ago by Jeremy Leipzig18k
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mixed models with phylogenetic trees
... Is there a package that takes a phylogenetic tree and allows you to specify fixed and random effects by specifying a level of the tree, so everything above is random and everything below is fixed (or vice-versa)? So if you have a homologous SNP in some distant species and some phenotypic measure, y ...
mixed-models written 9 weeks ago by Jeremy Leipzig18k

Latest awards to Jeremy Leipzig

Popular Question 17 days ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Popular Question 3 months ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Appreciated 3 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Popular Question 3 months ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Appreciated 3 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Big Ass Servers & Storage
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Popular Question 4 months ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Student 4 months ago, asked a question with at least 3 up-votes. For What are the best examples of sample naming conventions?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How Much Does It Cost To Align A Flowcell In The Cloud?
Popular Question 5 months ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: How Much Does It Cost To Align A Flowcell In The Cloud?
Scholar 6 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Epic Question 6 months ago, created a question with more than 10,000 views. For Where Can I Get The Asperasoft Command Line Client Ascp
Popular Question 6 months ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: Big Ass Servers & Storage
Appreciated 7 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Popular Question 8 months ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Big Ass Servers & Storage
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Big Ass Servers & Storage
Appreciated 8 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Popular Question 8 months ago, created a question with more than 1,000 views. For Is There A Samtools/Bcftools Setting To Call Variants No Matter How Infrequent?
Scholar 9 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: How Much Does It Cost To Align A Flowcell In The Cloud?
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?

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