Moderator: Jeremy Leipzig

gravatar for Jeremy Leipzig
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Philadelphia, PA
Website:
http://jermdemo.blogsp...
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Last seen:
1 day, 16 hours ago
Joined:
6 years, 12 months ago
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Bioinformatics software developer working at a pediatric hospital.

Posts by Jeremy Leipzig

<prev • 758 results • page 1 of 76 • next >
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Comment: C: hppRNA: a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of
... do you have something against github or even bitbucket? sourceforge is a ghost town ...
written 26 days ago by Jeremy Leipzig16k
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Comment: C: Example of how bioinformaticians can publish in Scientific Reports (by nature pu
... Right. Without source code this paper is certainly no example of reproducible research, even though being both *in silico* and based on public data, it was well suited to be an examplar. ...
written 7 weeks ago by Jeremy Leipzig16k
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Answer: A: Bait/Target files for Picard HsMetrics (Exome Sequencing)
... cat nexterarapidcapture_exome_targetedregions_v1.2.bed | sed s/chr//g | sed s/M/MT/g > nexterarapidcapture_exome_targetedregions_v1.2.no_chr.MT.bed cat NexteraRapidCapture_Exome_Probes_v1.2.txt | grep CEX | sed -e 's/chrM/chrMT/g;s/chr//g;' | cut -f2,3,4 > NexteraRapidCapture_Exome_Pr ...
written 11 weeks ago by Jeremy Leipzig16k
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Comment: C: Join us in building a bioinformatics resource: The Biostar Handbook
... I also feel there should be links to actual Biostars questions and tags at the bottom of each page. This handbook seems a bit divorced from Biostars as it stands. ...
written 3 months ago by Jeremy Leipzig16k
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Comment: C: How to analyze NGS data: An overview of nine different IT solutions
... it's probably wise to leave out examples - the whiners will come out in force claiming they have feature X or feature Y that makes the category meaningless ...
written 4 months ago by Jeremy Leipzig16k
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Comment: C: Join us in building a bioinformatics resource: The Biostar Handbook
... OK so I will slowly provide replacements to the installation routines throughout this guide. By providing a universal means of specifying project dependencies, IMHO conda/bioconda have tremendous momentum in the bioinformatics community well outside of python. ...
written 4 months ago by Jeremy Leipzig16k
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Comment: C: Join us in building a bioinformatics resource: The Biostar Handbook
... How would you feel if I replaced all the installation code with conda? Is that really less informative? ...
written 4 months ago by Jeremy Leipzig16k
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Comment: C: Visualizing The Outputs Of Gatk/Depthofcoverage
... weird there are not more options for this as common as gatk is ...
written 4 months ago by Jeremy Leipzig16k
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Comment: C: edgeR and GO analysis using goana
... show us a snippet of mydata.txt ...
written 5 months ago by Jeremy Leipzig16k
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Comment: C: cutadapt does not keep sequences
... read the section on anchored 5' adapters http://cutadapt.readthedocs.io/en/stable/guide.html#anchored-5-adapters ...
written 5 months ago by Jeremy Leipzig16k

Latest awards to Jeremy Leipzig

Great Question 16 days ago, created a question with more than 5,000 views. For Are There Websites Which Allow Users To Post Comments On Peer-Reviewed Articles?
Good Answer 26 days ago, created an answer that was upvoted at least 5 times. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Is There A Convention For Representing Indels In Diploid Genome Sequences?
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Is There A Convention For Representing Indels In Diploid Genome Sequences?
Student 11 weeks ago, asked a question with at least 3 up-votes. For Why Do Genbank And Refseq Have Different Coordinates For Mitochondrial Features?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How Much Does It Cost To Align A Flowcell In The Cloud?
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: Making bioinformatics help and tutorials open
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How Much Does It Cost To Align A Flowcell In The Cloud?
Scholar 5 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Appreciated 5 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Good Answer 6 months ago, created an answer that was upvoted at least 5 times. For A: Why Does Rna-Seq Read Count Fit Poisson Distribution?
Scholar 7 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Prophet 7 months ago, created a post with more than 20 followers. For Are There Websites Which Allow Users To Post Comments On Peer-Reviewed Articles?
Popular Question 7 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Popular Question 8 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Scholar 8 months ago, created an answer that has been accepted. For A: Retrieve mutation position and ID for a mutation in hgvs format
Popular Question 8 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Appreciated 9 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: No Reads Ever Map To First 3Million Bases Of Chromosomes In Mouse Genome! Why?
Student 9 months ago, asked a question with at least 3 up-votes. For What Are The Most Common Stupid Mistakes In Bioinformatics?
Popular Question 10 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Popular Question 11 months ago, created a question with more than 1,000 views. For Why Isn'T Na12878 In All.2Of4Intersection.20100804.Genotypes.Vcf.Gz
Student 11 months ago, asked a question with at least 3 up-votes. For Is There A Convention For Representing Indels In Diploid Genome Sequences?
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
Appreciated 11 months ago, created a post with more than 5 votes. For A: Why Has The Cost Of Genome Sequencing Decline So Rapidly?

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