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Comment: Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
15 days ago by Jeremy Leipzig 23k
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1
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2.3k
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Comment: Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
16 days ago by Jeremy Leipzig 23k
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9.2k
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Comment: Comment: Resource: A searchable library of 100,000+ scientific figures for visualization
22 days ago by Jeremy Leipzig 23k
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500
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Comment: Comment: VCF Header malformation
6 weeks ago by Jeremy Leipzig 23k
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484
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Comment: Comment: lifting over mitochondrial SNPs between reference genomes
6 weeks ago by Jeremy Leipzig 23k
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672
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Answer: Answer: Joint Calling for Large Germline WGS Cohort
9 weeks ago by Jeremy Leipzig 23k
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661
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Answer: Answer: Example of ClinVar pathogenic variant where the reference allele is pathogenic?
12 weeks ago by Jeremy Leipzig 23k
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1
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466
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Comment: Comment: how to use filter_vep to filter vcf file
12 weeks ago by Jeremy Leipzig 23k
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565
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Comment: Comment: How important are allele fractions when calling variants?
3 months ago by Jeremy Leipzig 23k
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1
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2.6k
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Comment: Comment: Bioinformatics Docker Images Project (https://pegi3s.github.io/dockerfiles/)
4 months ago by Jeremy Leipzig 23k
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0
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996
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Comment: Comment: Depth in Cram file does not match depth in VCF file
5 months ago by Jeremy Leipzig 23k
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1
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675
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Comment: Comment: Inconsistency between VCF and HGVS
5 months ago by Jeremy Leipzig 23k
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1.9k
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Comment: Comment: Reproducibility Crisis
5 months ago by Jeremy Leipzig 23k
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755
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Answer: Answer: VEP won't show symbols for all variants; SnpEff will, but won't for others
5 months ago by Jeremy Leipzig 23k
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776
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Comment: Comment: Seeking Help for Reanalysis of Raw WES Data
6 months ago by Jeremy Leipzig 23k
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0
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590
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Comment: Comment: How to compute DS (diploid dosage) from HDS (haploid dosage) in VCF?
6 months ago by Jeremy Leipzig 23k
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3.1k
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Comment: Comment: How are probabilities of insertions and deletions encoded in FASTQ?
6 months ago by Jeremy Leipzig 23k
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3.7k
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Comment: Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra
6 months ago by Jeremy Leipzig 23k
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599
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Comment: Comment: Short Survey on Genomic Data Management & Analysis Workflows
6 months ago by Jeremy Leipzig 23k
1
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0
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509
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Comment: Comment: Seafood Genomics course - Online, February 25-28
7 months ago by Jeremy Leipzig 23k
2
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2
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789
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Answer: Answer: Split genotypes in VCF file
7 months ago by Jeremy Leipzig 23k
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872
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Comment: Comment: Vcf Filtering
7 months ago by Jeremy Leipzig 23k
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1
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1.2k
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Answer: Answer: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
8 months ago by Jeremy Leipzig 23k
4
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1
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843
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Answer: Answer: How to Resolve Reference Mismatch While Extracting Gene Variants from 1000 Genom
8 months ago by Jeremy Leipzig 23k
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1.2k
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Comment: Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
8 months ago by Jeremy Leipzig 23k
1
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1.6k
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Comment: Comment: Non Variant Sites in GVCF File
8 months ago by Jeremy Leipzig 23k
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1
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1.6k
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Answer: Answer: Non Variant Sites in GVCF File
8 months ago by Jeremy Leipzig 23k
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805
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Answer: Answer: Does TCGA data only use host reads to make pre-processed data (CNV, Mutations st
8 months ago by Jeremy Leipzig 23k
1
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1.7k
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Comment: Comment: Blast with variable number of Ns
9 months ago by Jeremy Leipzig 23k
1
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0
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639
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Comment: Comment: Regarding ClinVar's VCF file
9 months ago by Jeremy Leipzig 23k
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0
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1.2k
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
9 months ago by Jeremy Leipzig 23k
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0
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1.2k
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
9 months ago by Jeremy Leipzig 23k
0
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1
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1.2k
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
9 months ago by Jeremy Leipzig 23k
1
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6
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1.2k
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English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded genotype (0/1)
genotypes vcf
9 months ago by Jeremy Leipzig 23k
0
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1
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1.9k
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Answer: Answer: Ensembl vep GRCh38 cache version
9 months ago by Jeremy Leipzig 23k
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0
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1.1k
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Comment: Comment: Can I combine variants called using T2T-CHM13 with GRCh38?
9 months ago by Jeremy Leipzig 23k
2
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0
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917
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Answer: Answer: Getting gnomAD allele frequencies for checking against populations
9 months ago by Jeremy Leipzig 23k
1
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1
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1.2k
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Comment: Comment: Experienced Bioinformatician Seeking Opportunities in NGS Data Analysis and Pipe
10 months ago by Jeremy Leipzig 23k
1
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1
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844
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Comment: Comment: A notebook for checking relatedness and X heterozygosity from sequencing data
10 months ago by Jeremy Leipzig 23k
0
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1
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1.4k
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Comment: Comment: Any Paper: Ultra-fast QA and literature search based on Pubmed papers.
10 months ago by Jeremy Leipzig 23k
1
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6
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1.6k
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What is a genomic range that would almost always get decent WGS coverage but is never covered by WES?
wes wgs
updated 10 months ago by 22k • written 10 months ago by 23k
0
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1
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1.6k
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Comment: Comment: What is a genomic range that would almost always get decent WGS coverage but is
10 months ago by Jeremy Leipzig 23k
0
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0
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1.6k
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Comment: Comment: What is a genomic range that would almost always get decent WGS coverage but is
10 months ago by Jeremy Leipzig 23k
0
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0
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2.5k
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Comment: Comment: failing to install rMATS
10 months ago by Jeremy Leipzig 23k
0
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0
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1.0k
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Comment: Comment: Snakemake expand(): using a helper function (zip) and imputing wildcards?
10 months ago by Jeremy Leipzig 23k
2
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2
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1.2k
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Answer: Answer: Why higher read counts in chromosome M/MT
10 months ago by Jeremy Leipzig 23k
0
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0
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1.3k
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Comment: Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
10 months ago by Jeremy Leipzig 23k
0
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1
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1.3k
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Comment: Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
10 months ago by Jeremy Leipzig 23k
0
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1
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1.3k
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Comment: Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
11 months ago by Jeremy Leipzig 23k
1
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0
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988
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Answer: Answer: Use of gVCF by clinical sequencing labs
11 months ago by Jeremy Leipzig 23k
1,409 results • Page 1 of 29
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