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346
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Answer:
Answer: Joint Calling for Large Germline WGS Cohort
4 days ago by
Jeremy Leipzig
23k
3
votes
1
reply
534
views
Answer:
Answer: Example of ClinVar pathogenic variant where the reference allele is pathogenic?
21 days ago by
Jeremy Leipzig
23k
0
votes
1
reply
405
views
Comment:
Comment: how to use filter_vep to filter vcf file
23 days ago by
Jeremy Leipzig
23k
1
vote
0
replies
479
views
Comment:
Comment: How important are allele fractions when calling variants?
7 weeks ago by
Jeremy Leipzig
23k
0
votes
1
reply
2.5k
views
Comment:
Comment: Bioinformatics Docker Images Project (https://pegi3s.github.io/dockerfiles/)
10 weeks ago by
Jeremy Leipzig
23k
0
votes
0
replies
872
views
Comment:
Comment: Depth in Cram file does not match depth in VCF file
3 months ago by
Jeremy Leipzig
23k
0
votes
1
reply
619
views
Comment:
Comment: Inconsistency between VCF and HGVS
3 months ago by
Jeremy Leipzig
23k
1
vote
0
replies
1.5k
views
Comment:
Comment: Reproducibility Crisis
3 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
598
views
Answer:
Answer: VEP won't show symbols for all variants; SnpEff will, but won't for others
3 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
666
views
Comment:
Comment: Seeking Help for Reanalysis of Raw WES Data
4 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
490
views
Comment:
Comment: How to compute DS (diploid dosage) from HDS (haploid dosage) in VCF?
4 months ago by
Jeremy Leipzig
23k
0
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0
replies
2.9k
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Comment:
Comment: How are probabilities of insertions and deletions encoded in FASTQ?
4 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
3.6k
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Comment:
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra
4 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
550
views
Comment:
Comment: Short Survey on Genomic Data Management & Analysis Workflows
4 months ago by
Jeremy Leipzig
23k
1
vote
0
replies
450
views
Comment:
Comment: Seafood Genomics course - Online, February 25-28
5 months ago by
Jeremy Leipzig
23k
2
votes
2
replies
673
views
Answer:
Answer: Split genotypes in VCF file
5 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
765
views
Comment:
Comment: Vcf Filtering
5 months ago by
Jeremy Leipzig
23k
1
vote
1
reply
1.1k
views
Answer:
Answer: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
6 months ago by
Jeremy Leipzig
23k
4
votes
1
reply
762
views
Answer:
Answer: How to Resolve Reference Mismatch While Extracting Gene Variants from 1000 Genom
6 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
1.1k
views
Comment:
Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
6 months ago by
Jeremy Leipzig
23k
1
vote
0
replies
1.4k
views
Comment:
Comment: Non Variant Sites in GVCF File
6 months ago by
Jeremy Leipzig
23k
1
vote
1
reply
1.4k
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Answer:
Answer: Non Variant Sites in GVCF File
6 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
718
views
Answer:
Answer: Does TCGA data only use host reads to make pre-processed data (CNV, Mutations st
6 months ago by
Jeremy Leipzig
23k
1
vote
0
replies
1.5k
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Comment:
Comment: Blast with variable number of Ns
6 months ago by
Jeremy Leipzig
23k
1
vote
0
replies
564
views
Comment:
Comment: Regarding ClinVar's VCF file
7 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
1.0k
views
Comment:
Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
7 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
1.0k
views
Comment:
Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
7 months ago by
Jeremy Leipzig
23k
0
votes
1
reply
1.0k
views
Comment:
Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
7 months ago by
Jeremy Leipzig
23k
1
vote
6
replies
1.0k
views
English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded genotype (0/1)
genotypes
vcf
7 months ago by
Jeremy Leipzig
23k
0
votes
1
reply
1.4k
views
Answer:
Answer: Ensembl vep GRCh38 cache version
7 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
966
views
Comment:
Comment: Can I combine variants called using T2T-CHM13 with GRCh38?
7 months ago by
Jeremy Leipzig
23k
2
votes
0
replies
728
views
Answer:
Answer: Getting gnomAD allele frequencies for checking against populations
7 months ago by
Jeremy Leipzig
23k
1
vote
1
reply
1.1k
views
Comment:
Comment: Experienced Bioinformatician Seeking Opportunities in NGS Data Analysis and Pipe
8 months ago by
Jeremy Leipzig
23k
1
vote
1
reply
776
views
Comment:
Comment: A notebook for checking relatedness and X heterozygosity from sequencing data
8 months ago by
Jeremy Leipzig
23k
0
votes
1
reply
1.3k
views
Comment:
Comment: Any Paper: Ultra-fast QA and literature search based on Pubmed papers.
8 months ago by
Jeremy Leipzig
23k
1
vote
6
replies
1.5k
views
What is a genomic range that would almost always get decent WGS coverage but is never covered by WES?
wes
wgs
updated 8 months ago by
i.sudbery
21k • written 8 months ago by
Jeremy Leipzig
23k
0
votes
1
reply
1.5k
views
Comment:
Comment: What is a genomic range that would almost always get decent WGS coverage but is
8 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
1.5k
views
Comment:
Comment: What is a genomic range that would almost always get decent WGS coverage but is
8 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
2.1k
views
Comment:
Comment: failing to install rMATS
8 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
936
views
Comment:
Comment: Snakemake expand(): using a helper function (zip) and imputing wildcards?
8 months ago by
Jeremy Leipzig
23k
2
votes
2
replies
1.1k
views
Answer:
Answer: Why higher read counts in chromosome M/MT
8 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
1.2k
views
Comment:
Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
8 months ago by
Jeremy Leipzig
23k
0
votes
1
reply
1.2k
views
Comment:
Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
8 months ago by
Jeremy Leipzig
23k
0
votes
1
reply
1.2k
views
Comment:
Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
8 months ago by
Jeremy Leipzig
23k
1
vote
0
replies
893
views
Answer:
Answer: Use of gVCF by clinical sequencing labs
8 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
893
views
Comment:
Comment: Use of gVCF by clinical sequencing labs
8 months ago by
Jeremy Leipzig
23k
0
votes
0
replies
705
views
Answer:
Answer: Where can I find a database of healthy genotypes as well as a database of geneti
9 months ago by
Jeremy Leipzig
23k
0
votes
2
replies
3.0k
views
Answer:
Answer: Can't reproduce harmony results in Seurat
10 months ago by
Jeremy Leipzig
23k
2
votes
0
replies
660
views
Answer:
Answer: Why does the AD value of my VCF file display 3 values?
10 months ago by
Jeremy Leipzig
23k
1
vote
0
replies
1.2k
views
Comment:
Comment: Ancestry estimation using 1000 genomes as reference
10 months ago by
Jeremy Leipzig
23k
1,404 results • Page
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