User: cicindel

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cicindel10
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Last seen:
9 months ago
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1 year, 11 months ago
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Posts by cicindel

<prev • 6 results • page 1 of 1 • next >
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Answer: A: plink produces does pruning according to log file but prune.in is full of dots
... I wrote a script to solve exactly this, you can find it here as a [gist][1]. In the script I also explain what's going on. https://gist.github.com/janxkoci/25d495e6cb9f21d5ee4af3005fb3c77a [1]: https://gist.github.com/janxkoci/25d495e6cb9f21d5ee4af3005fb3c77a ...
written 9 months ago by cicindel10 • updated 9 months ago by genomax75k
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Comment: C: Assessing The Quality Of De Novo Assembled Data
... I think I've found all main dependencies in conda repos (you can search them on [anaconda.org][1]) so it should be as simple as few conda commands. And if you don't use conda already (esp with [Bioconda channel][2]), you all should start right now :p PS: I also found haskell in brew, but I dunno ho ...
written 12 months ago by cicindel10
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Comment: C: Sanger sequencing is no longer the gold standard?
... Hi Kevin, would it be possible to upload the unpublished manuscript to some preprint server like bioRxiv, arXiv, or PeerJ? So the research community can still benefit from your findings - and they are free to use. I would understand if the clinical setting makes it difficult. Thanks for considerin ...
written 12 months ago by cicindel10
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Comment: C: tabix for multiple vcf
... I'm not familiar with vcf-merge, but you can at least use wildcards to simplify your syntax, because to unix/linux commandline the `A.vcf.gz B.vcf.gz C.vcf.gz` and `*vcf.gz` are the same thing. `*vcf.gz` will expand to your list of files. ...
written 13 months ago by cicindel10
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Comment: C: Splitting A Fasta File
... Oh cool, thanks - that seems to work exactly as I want it :) ...
written 23 months ago by cicindel10
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Comment: C: Splitting A Fasta File
... Hi Frédéric, both of these scripts work well, however I'm puzzled by how your solution works at all - Pierre's version has the `next` statement in it, but I'd expect yours to print just the names and not the sequence - but it does :D Do you care to explain where the magic happens please? I'm no expe ...
written 23 months ago by cicindel10

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