User: Ct586

gravatar for Ct586
Ct586530
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530
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Location:
China
Last seen:
11 months, 3 weeks ago
Joined:
7 years, 8 months ago
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c***************@163.com

Computional biologist!

Posts by Ct586

<prev • 40 results • page 1 of 4 • next >
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How to perform GO analysis for transposons
... Dear All, I wonder if there is a way to annotate the function of transposons.   One way I got is using for the nearest genes of each transposon to represent the function of the transposon. I wonder if there are other methods? Or what should I pay attention to when using neareset genes representin ...
enrichment transposon gene ontology go written 3.2 years ago by Ct586530 • updated 3.2 years ago by SES8.1k
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Comment: A: Can not find readline library when installing R
... @ Sebastian Kurscheid: Sorry that `ADD REPLY` link is not working for me. I have added operating system information and double checked environmental variables. Currently I can not get `configure` finished successfully. The command for configure is `./configure --prefix=/home/ct/softwares/R-3.2.0_ins ...
written 3.7 years ago by Ct586530
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(Closed) Can not find readline library when installing R
... Hi, all, When I was configuring R (R-3.2.0 and R-3.1.1), I met the following problems. ``` checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h pr ...
r readline written 3.7 years ago by Ct586530 • updated 3.7 years ago by Sebastian Kurscheid300
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Comment: C: intersectBed Segmentation fault or Received illegal bin number
... Anyway I think it is weird since it works fine for you. Maybe I will give bedtools 2.17.0 a try just for curiosity. ...
written 3.9 years ago by Ct586530
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Comment: C: intersectBed Segmentation fault or Received illegal bin number
... It is a great choice. Just before trying `bedops`, I found my coordinates are too large, which causing the problem. Anyway, I'd like to try `bedops` since I am attracted by its homepage. ...
written 3.9 years ago by Ct586530
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Comment: C: intersectBed Segmentation fault or Received illegal bin number
... Thanks! That's the problem. This may be a potential bug of `shuffleBed` since the bed file is generated using it with `-chrom` parameter given. ...
written 3.9 years ago by Ct586530
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Comment: C: intersectBed Segmentation fault or Received illegal bin number
... Thanks, the version I am using is bedtools 2.22.1.  ...
written 3.9 years ago by Ct586530
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intersectBed Segmentation fault or Received illegal bin number
... I have met an weird error. Here lists my two bed files ``` ==> a.bed <== chr1 645339590 645344590 chr1 645485603 645490603 chr1 646267584 646272584 chr1 651156159 651161159 chr1 652224601 652234601 chr1 654584466 654589466 chr1 656200028 656210028 chr1 658335720 658345720 chr1 672881471 6 ...
intersectbed written 3.9 years ago by Ct586530 • updated 3.9 years ago by Alex Reynolds26k
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Comment: C: Should Samtools Pileup Be Performed On Uniquely Mapped Reads Or All The Reads?
... That is a great way to pick unique alinments usually. But how to interpret the coexists of MAPQ 0 and XT:A:U in one alignment of bwa output? ...
written 6.8 years ago by Ct586530
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Comment: C: Software To Analyse Chromatin-Interaction Sequencing Datasets?
... I wonder if you tried this software package. The document is very short and lack of necessary information. I have not found a way to use it. Could you give some suggestions? ...
written 6.8 years ago by Ct586530

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Great Question 3.1 years ago, created a question with more than 5,000 views. For Can not find readline library when installing R
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Popular Question 3.1 years ago, created a question with more than 1,000 views. For Can not find readline library when installing R
Popular Question 3.1 years ago, created a question with more than 1,000 views. For How To Set The Parameter Of Detecting Conservation Using Psiblast Or Other Tools?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For How Can I Detect If A Protein Can Bind A Segment Of Dna Sequence In Vivo?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For What Is The Best Method To Find Orthologous Genes Of A Species?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For intersectBed Segmentation fault or Received illegal bin number
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