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121,804 results • Page
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8.6k
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Job:
Resident Academic Full-Time Post in Bioinformatics (University of Malta)
bioinformatics
tenure
academia
9 days ago by
jp
▴ 130
0
votes
0
replies
8.4k
views
GO Terms significance Scoring
go
semantic
annotation
9 days ago by
Marek
• 0
2
votes
6
replies
9.9k
views
Human WGS analysis system requirements
Human
NGS
WGS
analysis
Server
updated 9 days ago by
GenoMax
153k • written 9 days ago by
genomics_buddy
• 0
5
votes
7
replies
19k
views
Help with Error in cellchat
cellchat
updated 5 days ago by
Arup Ghosh
3.4k • written 10 days ago by
Chris
▴ 360
1
vote
3
replies
13k
views
questioning about PCA graph in RNASeq analysis
bioinformatics-RNAseq
updated 5 days ago by
Arup Ghosh
3.4k • written 10 days ago by
Alaa
• 0
1
vote
1
reply
9.9k
views
statistical analysis
scRNA
statistics
updated 10 days ago by
ATpoint
89k • written 10 days ago by
archanaverma433
▴ 10
0
votes
0
replies
9.3k
views
News:
online course: Introduction to Python Programming for Biologists
Python
BioPython
Coding
10 days ago by
Physalia-courses
★ 2.6k
1
vote
1
reply
9.9k
views
Can I use raw read counts from the GTEx data for cross-tissue comparison?
rnaseq
gtex
statistics
normalization
updated 10 days ago by
GenoMax
153k • written 10 days ago by
mukherjeeliana24
• 0
5
votes
2
replies
11k
views
Forum:
FDR correction can sometimes lie to you!
correction
statistics
FDR
testing
multiple
updated 11 days ago by
LChart
5.0k • written 12 days ago by
Chakri
▴ 50
4
votes
9
replies
12k
views
Running metaSPAdes with 71M paired-end reads: RAM and swap memory concerns
metaspades
assembly
metagenomics
11 days ago by
sumah.1si21bt017
▴ 30
0
votes
1
reply
10k
views
Mageck RuntimeWarning overflow encountered in multiply
crispr
python
mageckmle
mageck
linux
updated 10 days ago by
ATpoint
89k • written 11 days ago by
liz.b
• 0
1
vote
5
replies
11k
views
Phage whole genome sequence submission by Bankit
phage
submission
updated 11 days ago by
acvill
▴ 350 • written 12 days ago by
Parto
• 0
0
votes
1
reply
10k
views
Any alternative way to do ASAP (Assemble Species by Automatic Partitioning)?
delimitation
Species
test
updated 11 days ago by
Mark
★ 1.7k • written 12 days ago by
Chatchapon
• 0
0
votes
1
reply
11k
views
How to determine the relative abundance
Abundance
Relative
Genomics
Metagenomics
updated 11 days ago by
sumah.1si21bt017
▴ 30 • written 3.5 years ago by
serene.s
• 0
0
votes
1
reply
10k
views
How to correctly report exon number for CRISPR-Cas9 knockout when genes have multiple isoforms?
numbering
exon
CRISPR-Cas9
updated 11 days ago by
ATpoint
89k • written 12 days ago by
jakob.vanek
• 0
0
votes
0
replies
9.8k
views
Read- and Assembly-based taxonomic classification of mixed (Prokaryote + Eukaryote) metagenomes
Shotgun
Taxonomy
metagenomic
12 days ago by
sumah.1si21bt017
▴ 30
0
votes
2
replies
10k
views
Refcall in VCF
pass
vcf
phasing
pipeline
Refcall
updated 11 days ago by
prasundutta87
▴ 720 • written 19 days ago by
Mahdi&Christ
▴ 20
2
votes
8
replies
790
views
Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
analysis
sequencing
scRNA
seurat
updated 2 days ago by
1769mkc
★ 1.3k • written 12 days ago by
Arindam
▴ 10
5
votes
7
replies
10k
views
how to download gene annotation for NCBI GENE ID
R
entrez
NCBI
updated 12 days ago by
josev.die
▴ 70 • written 16 days ago by
Bioinfonext
▴ 470
0
votes
0
replies
9.8k
views
News:
Genome Assembly using long-reads PacBio data
HIC
LongReads
GenomeAssembly
PacBio
13 days ago by
Physalia-courses
★ 2.6k
2
votes
2
replies
10k
views
Taxonomic classification of shotgun metagenomic data of rhizospheric soil (bacteria + fungi)
Shotgun
classification
Taxonomic
metagenomics
13 days ago by
sumah.1si21bt017
▴ 30
0
votes
2
replies
9.4k
views
I encountered an error while using R Diffbind for data analysis
Diffbind
R
12 days ago by
Pallondyle
• 0
0
votes
1
reply
8.3k
views
News:
Single-Cell RNA-Seq Data Analysis: A Practical Introduction (October 6-8 in Berlin, Germany)
scRNAseq
transcriptomics
singleCell
13 days ago by
ecSeq Bioinformatics
▴ 20
0
votes
1
reply
7.5k
views
Single cell multiomics data i.e, sc(RNA+ATAC) seq data tar file
single
omics
cell
multi
updated 13 days ago by
ATpoint
89k • written 15 days ago by
Rupanjali
• 0
5
votes
4
replies
7.6k
views
Rust-HTSlib Script Only Outputs BAM Header, Records Are Missing
Rust
BAM
rust_htslib
14 days ago by
plusone
▴ 50
4
votes
2
replies
6.7k
views
galaxy and RNA seq
seq
RNA
13 days ago by
nmozdoori
▴ 20
0
votes
0
replies
6.1k
views
DIABLO Multi-omics Integration
How
results
interpret
DIABLO
to
updated 14 days ago by
GenoMax
153k • written 14 days ago by
Haya
• 0
2
votes
1
reply
7.3k
views
Which metric is best to represent cell-level counts/features in Seurat: raw/log-normalized (nCount_RNA/nFeature_RNA) or SCTransform (nCount_SCT/nFeat…
R
visualization
updated 15 days ago by
ATpoint
89k • written 23 days ago by
solo.albif
• 0
0
votes
2
replies
5.6k
views
Job:
Help with bioinformatics/genetics content of my CV
terminology
CV
updated 16 days ago by
Anchal
• 0 • written 23 days ago by
mairena.hirschberg
• 0
0
votes
3
replies
3.5k
views
Where can I get Human microbiome dataset
microbiome
human
data
updated 13 days ago by
Arup Ghosh
3.4k • written 16 days ago by
Emily
▴ 70
0
votes
13
replies
6.9k
views
chimeraTE GTF format error
chimeraTE
updated 5 days ago by
lieven.sterck
15k • written 16 days ago by
frarodmar17
• 0
6
votes
6
replies
2.8k
views
Estimating copy number of heterologous genes from WGS data in Yarrowia lipolytica
wgs
CNVs
copy-number
updated 14 days ago by
colindaven
7.8k • written 18 days ago by
Giorgia
▴ 10
0
votes
0
replies
2.4k
views
News:
online course (4th edition): Structural Variant Detection & Comparison
LongReads
Nanopore
PacBio
StructuralVariations
16 days ago by
Physalia-courses
★ 2.6k
1
vote
0
replies
2.4k
views
News:
Cellosaurus release 53 + new SPARQL/RDF functionalities
database
biocuration
line
knowledgebase
cell
16 days ago by
Amos Bairoch
▴ 140
0
votes
2
replies
2.6k
views
Relative viral load estimation from NGS data – is it possible?
virology
updated 11 days ago by
Mark
★ 1.7k • written 17 days ago by
omicon
▴ 40
0
votes
0
replies
2.4k
views
Best Practice for Group Composition Plots in Phyloseq
phyloseq
microbiome
relative-abundance
17 days ago by
bioinfo
▴ 60
1
vote
1
reply
2.4k
views
primer
primer
updated 17 days ago by
GenoMax
153k • written 17 days ago by
elahe
• 0
0
votes
0
replies
2.4k
views
Help installing and running PITA & PicTar for miRNA target prediction
microRNA
PITA
PicTar
updated 17 days ago by
Ram
45k • written 17 days ago by
Andie
• 0
1
vote
3
replies
2.6k
views
Splitting VCF using phase information
phasing
bcftools
vcf
updated 13 days ago by
cmdcolin
★ 4.3k • written 17 days ago by
Kyra
• 0
0
votes
0
replies
2.3k
views
Generating VCF file from Illumina MEGA array
strand
VCF
SNP
illumina
microarray
17 days ago by
112233
• 0
3
votes
2
replies
2.3k
views
High discrepancy between mutation frequency values
MF
AF
gnomAD
TCGA
12 days ago by
Ana
▴ 10
9
votes
4
replies
2.3k
views
How to troubleshoot strange hyperparameter trace from BSLMM (GEMMA)
gemma
gwas
bslmm
13 days ago by
gina.maria
▴ 60
0
votes
1
reply
1.9k
views
Mean count in DESeq
in
DESeq
count
Mean
updated 17 days ago by
GenoMax
153k • written 17 days ago by
prerna
• 0
8
votes
11
replies
3.4k
views
is there publicly available tool for assembly of bionano data
OM
bionano
assembly
alignment
10 days ago by
eebloom
▴ 110
3
votes
4
replies
9.3k
views
7 follow
Any bacterial databases that contain Gram staining information?
gram-positive
gram-negative
written 9.1 years ago by
archaeopteryx
• 0
0
votes
1
reply
2.5k
views
detectRUNS R package error
mapping
detectRUNS
R
ROH
homozygosity
updated 17 days ago by
Miika
• 0 • written 3.0 years ago by
Roisin Marie
• 0
3
votes
1
reply
1.9k
views
Visualisation of big insertions by using Illumina emedgene
emedgene
updated 17 days ago by
GenoMax
153k • written 17 days ago by
Nina
▴ 30
2
votes
5
replies
2.1k
views
Integrity of bam files
integrity
RAN-seq
bam
samtools
17 days ago by
SHN
▴ 40
0
votes
0
replies
1.8k
views
News:
Course: RNA Sequencing Data with R/Bioconductor - online, 3–14 November
RNAseq
DifferentialExpressionAnalysis
R
Bioconductor
17 days ago by
Physalia-courses
★ 2.6k
0
votes
2
replies
2.7k
views
Clumping- cannot mtfrm
clumping
MR
updated 18 days ago by
Onyeubani
▴ 90 • written 7 months ago by
sp
• 0
121,804 results • Page
2 of 2437
Recent Votes
Universal Human Reference RNA Sample
Universal Human Reference RNA Sample
Are these 10x samples too low quality for downstream analysis?
Are these 10x samples too low quality for downstream analysis?
C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
Answer: Question about substitution of KEGG
Answer: Universal Human Reference RNA Sample
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Comment: Help with metagenomics viral
by
cfos4698
★ 1.1k
It's possible/likely that your sequencing simply didn't recover any virus reads, despite RT-PCR detection. Often there is too much 'other s…
Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
Jordan M Eizenga
▴ 740
I would say the answer is unfortunately no. It would be possible to make smaller individual XG indexes, but downstream subcommands in the V…
Comment: Question about substitution of KEGG
by
dxh0222
▴ 10
Thanks for your recommendation! I think kofam_scan is suitable for me.
Comment: How to use CAFE from Orthofinder Results
by
san96
▴ 190
Hi, are you referring to Orthogroups.GeneCount.tsv? Thank you.
Comment: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴ 80
For example you can see it here, this is the first one in the table (SRR1215996): https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=ru…
Answer: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴ 80
I believe here: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP025982 They are from the SEQC https://www-nature-com.proxy3.library.…
Answer: Question about substitution of KEGG
by
Mensur Dlakic
★ 29k
There is a tool that uses KEGG hidden Markov models and HMMer to scan individual proteins. It is not automated and may require some fiddlin…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
1769mkc
★ 1.3k
DRAGEN are you using dragen 4.4 release for your workflow?
Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
by
Jeremy Leipzig
23k
Your strategy sounds ok but we would need to see your modified file and the exact command you ran to know what happened.
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
Arindam
▴ 10
I think for mapping to the reference genome
Comment: Local Synteny Analysis with Uncharacterized Genes
by
Joe
22k
+1 for `clinker`, came here to make the same suggestion
Comment: Help with metagenomics viral
by
CECEL
• 0
Hi, thanks for answer! I'm using Kraken2, but the classified reads, when put on BLAST, didn't returned nothing, even in Viruses_db...
Comment: How to obtain a refFlat file for the Rat
by
GenoMax
153k
You can't mix and match genomes and annotation as we discussed in the prior thread. Are you using the genome from UCSC, if you are using th…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
1769mkc
★ 1.3k
"DRAGEN uses a newer method employing hashtables" you mean the reference builder?
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
李经纬
• 0
I use `vg construct --region chrom:start-end` to restrict graph to a chromosome region.
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