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109,194 results • Page
2 of 2184
Sort: Rank
Rank
Views
Votes
Replies
0
votes
4
replies
220
views
Problem in retrieving geo data sets
geo
2 days ago by
anasjamshed
▴ 120
1
vote
0
replies
122
views
News:
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 2 days ago by
Ram
38k • written 2 days ago by
ATpoint
71k
3
votes
7
replies
300
views
Diffbind dba.count doesn't give FRiP score
Diffbind
FRiP
updated 1 day ago by
Rory Stark
★ 1.7k • written 2 days ago by
gyspace
• 0
0
votes
2
replies
237
views
Diffbind: how to get raw read counts and normalized read counts
Diffbind
rawcount
1 day ago by
soda
▴ 40
5
votes
11
replies
468
views
Align miRNA library (small RNA-seq) without trimming
BOWTIE2
RNA-SEQ
BOWTIE
2 days ago by
Paola
▴ 10
2
votes
4
replies
416
views
VCF file generated by Gridss not recognised by VEP
NGS
variant-calling
VEP
Gridss
updated 2 days ago by
Ryangguk Kim
▴ 90 • written 26 days ago by
Reda
• 0
1
vote
3
replies
186
views
Convert .bam file from version 1.6 to 1.4
bam
samtools
updated 2 days ago by
Istvan Albert
97k • written 2 days ago by
Abhi
• 0
1
vote
2
replies
168
views
ChIPseeker Warning Message
ChIPseeker
2 days ago by
Jen
▴ 40
0
votes
0
replies
97
views
Use GraphQL to query miltiple rsIDs from GWAS study in Open Targets
OpenTargets
GWAS
GraphQL
2 days ago by
dzisis1986
▴ 60
2
votes
6
replies
266
views
How to remove unknown batch-batch effects from GEO datasets
batch-effect
GEO
updated 2 days ago by
Ram
38k • written 2 days ago by
2317711200
• 0
0
votes
8
replies
418
views
How to get subset of a Seurat object based on metadata?
scRNA-seq
Seurat
updated 1 day ago by
fracarb8
▴ 940 • written 3 days ago by
sunyeping
▴ 80
10
votes
8
replies
469
views
7 follow
Forum:
Any tips in landing a bioinformatic job?
Spain
R
2 days ago by
Jorge
▴ 30
1
vote
2
replies
290
views
Extract data from Signac RegionMatrix?
Signac
r
seurat
sc-atac
updated 2 days ago by
Chironex
▴ 40 • written 6 weeks ago by
andrea.rubiop88
• 0
1
vote
5
replies
346
views
Total No of Genes of GENCODE Release 43
gencode
gene
2 days ago by
ahmad
• 0
0
votes
1
reply
164
views
How to make "Custom annotation File" for GO analysis using TOPgo
enrichment
GO
analysis
TOPGO
updated 2 days ago by
Shred
★ 1.1k • written 2 days ago by
hellokwmin
• 0
0
votes
0
replies
99
views
topGO error: KS elim test
KS
topGO
enrichment-analysis
updated 2 days ago by
Ram
38k • written 2 days ago by
Priya Rao
• 0
1
vote
2
replies
271
views
How can I use bcftools mpileup or an alternative to find ALL variants without any probabilistic inference?
Fgbio
UMI
variant-calling
2 days ago by
chaco001
▴ 20
3
votes
3
replies
230
views
PTM-aware protein folding / docking
docking
protein-structure
folding
updated 1 day ago by
Mensur Dlakic
★ 23k • written 3 days ago by
LChart
2.2k
0
votes
5
replies
4.1k
views
6 follow
Admixture cv error
Structure
CV-Error-Rates
Admixture
updated 2 days ago by
Ram
38k • written 7.1 years ago by
s.bourne
• 0
8
votes
2
replies
319
views
What is the NCBI's definition of an "atypical genome"?
NCBI
genome
annotation
updated 3 days ago by
MirianT_NCBI
▴ 530 • written 3 days ago by
acvill
▴ 290
1
vote
2
replies
196
views
Best way to visualize .paf or .sam alignment to a fasta file
visualization
sam
fasta
paf
alignment
updated 2 days ago by
colindaven
4.6k • written 3 days ago by
Mark
• 0
0
votes
0
replies
115
views
Problem when downloading dataset from ArrayExpress
Bioconductor
ArrayExpress
3 days ago by
cogen859
• 0
0
votes
3
replies
213
views
using CITE-seq data to cluster single cells
clustering
cite-seq
k-means
10x
updated 2 days ago by
ATpoint
71k • written 3 days ago by
chi.delta
▴ 40
0
votes
0
replies
105
views
Extract cluster genes
fasta
cluster
updated 2 days ago by
Ram
38k • written 3 days ago by
BATMAN
• 0
1
vote
2
replies
172
views
Analysing the Effect of a Drug on the Morphological Changes of a Cell Type
drug-effect
statistical-analysis
3 days ago by
E-HR
• 0
0
votes
0
replies
150
views
Job:
Job: Bioinformatics Engineer position at Stanford; part of NIH-funded GREGoR Consortium
bioinformatics-engineer
updated 2 days ago by
Ram
38k • written 3 days ago by
lmeador
• 0
1
vote
3
replies
456
views
Post-Imputation QC Problem
Imputation
3 days ago by
Jesse
• 0
1
vote
2
replies
164
views
Module color label in WGCNA
labels2colors
WGCNA
3 days ago by
kivanvan
• 0
3
votes
1
reply
148
views
Why not use ONLY promoter-bound peaks when testing for enrichment in differentially-bound regions?
ChIP-seq
ChIPseeker
GO
updated 3 days ago by
Ram
38k • written 3 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
109
views
Clustering method for CT values of two group
PCA
Clustering
bioconductor
R
3 days ago by
Maria17
▴ 10
1
vote
1
reply
134
views
Integration of RNA seq data aligned to different reference genome versions
scRNA-seq
RNA-seq
updated 3 days ago by
Ram
38k • written 3 days ago by
susibing
▴ 20
0
votes
0
replies
105
views
UK BioBank HLA imputation
ukbb
hla
imputation
3 days ago by
hla_help
• 0
0
votes
4
replies
211
views
Update MitoZ 3.4 to 3.5
ubuntu
mitoZ
updated 3 days ago by
Ram
38k • written 3 days ago by
manaswiniparija3
▴ 10
0
votes
0
replies
115
views
ABSOLUTE for tumour purity with WES
tumour-purity
ABSOLUTE
WES
updated 3 days ago by
Ram
38k • written 3 days ago by
Cvlind
• 0
1
vote
4
replies
222
views
Suggestion for approaching multiple conditions scRNA-seq
scRNA-seq
3 days ago by
Eisuan
▴ 20
1
vote
1
reply
162
views
Dealing with very large gene-lists in GSEA
R
fgsea
GSEA
updated 3 days ago by
Trivas
▴ 760 • written 3 days ago by
yura.grabovska
▴ 50
0
votes
2
replies
374
views
Which GPU for local Colabfold
GPU
Alphafold
updated 3 days ago by
matt_arnold_bio
• 0 • written 4 months ago by
Arjen Ten Have
▴ 360
0
votes
2
replies
204
views
boxplot issue
DESeq2
Boxplot
updated 2 days ago by
ATpoint
71k • written 3 days ago by
kalyani
• 0
0
votes
1
reply
152
views
heatmap issue
heatmap
DESeq2
updated 3 days ago by
yura.grabovska
▴ 50 • written 3 days ago by
kalyani
• 0
3
votes
4
replies
395
views
differential gene analysis
DGE
3 days ago by
kalyani
• 0
1
vote
3
replies
203
views
merge vcf.gz file
vcf.gz
bcftools
3 days ago by
Mali
• 0
2
votes
4
replies
272
views
GO enrichment analysis
enrichment
analysis
GO
updated 3 days ago by
Jeremy
▴ 780 • written 3 days ago by
hellokwmin
• 0
6
votes
6
replies
2.5k
views
Sites for Computer Aided Drug Designing
CADD
Simulations
in-silico
Docking
written 8.3 years ago by
ruchikabhat31
▴ 60
0
votes
3
replies
677
views
database on patients treated with CAR T-cell therapies
cancer
written 16 months ago by
yueli7
▴ 240
0
votes
1
reply
140
views
installation of Snapgene tool in Ubuntu
installation
snapgene
Ubuntu
updated 3 days ago by
ATpoint
71k • written 3 days ago by
Fizzah
▴ 20
1
vote
3
replies
199
views
mpileup to sync file
AF
samtools
selection
vcf
popoolation
updated 3 days ago by
Pierre Lindenbaum
153k • written 3 days ago by
qstefano
▴ 20
0
votes
2
replies
209
views
Quality control of Chip-seq data (NRF and PCB)
control
library
quality
PCB
Chip-seq
NRF
9 hours ago by
michelafrancesconi9
• 0
2
votes
2
replies
289
views
Variant caller reports a homozygous variant genotype, but more reads are associated with reference
bcftools
variants
2 days ago by
rebeliscu
▴ 50
0
votes
0
replies
106
views
News:
Cellosaurus release 45 is available
knowledgebase
news
cell
line
3 days ago by
Amos Bairoch
▴ 110
0
votes
2
replies
2.8k
views
demultiplexing with guppy_basecaller and guppy_barcoder using --detect_mid_strand_adapter --detect_mid_strand_barcodes produce > 90% of unclassified …
demultiplexing
guppy
3 days ago by
andres.firrincieli
3.2k
109,194 results • Page
2 of 2184
Recent Votes
Answer: how can i filter a sam file from a paf file
Answer: Align miRNA library (small RNA-seq) without trimming
Answer: Snakemake workflow for trimmomatic
C: Adjust for covariates
Comment: syntax errors when running part3 all-against-all
Picard LiftOver rejecting all Variants
Comment: pyCirclize - Circular visualization in Python
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Recent Awards •
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Popular Question
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anasjamshed
▴ 120
Teacher
to
Papyrus
★ 2.4k
Popular Question
to
smrutimayipanda
▴ 20
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mohammedtoufiq91
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Recent Replies
Comment: how can i filter a sam file from a paf file
by
colindaven
4.6k
Just save yourself a lot of pain and learn to filter the sam/bam file efficiently. It is much more of a widespread standard than PAF.
Comment: Snakemake workflow for trimmomatic
by
GenoMax
127k
Please accept this answer (green check mark) to provide closure to this thread.
Comment: syntax errors when running part3 all-against-all
by
Sofia
• 0
When I started with the gz all-vs-all files for CHICK and ANOCA and started oma, everything ran fine, I got output. Then, in the same direc…
Comment: Quality control of Chip-seq data (NRF and PCB)
by
michelafrancesconi9
• 0
Can you explain me better? Because for the NRF I do : a) samtools view -c .bam b)samtools view -c -F 260 .bam then b/a and as a bam fi…
Comment: pyCirclize - Circular visualization in Python
by
karenkvn
▴ 40
Thank you for responding so quickly - this works perfectly!
Comment: pyCirclize - Circular visualization in Python
by
moshi
▴ 110
Please install Biopython with v1.80 or higher. If biopython>=1.80, there should be no errors.
Comment: Gene family classification using RNA-seq data
by
Dion
• 0
well, I have been given the task to retrieve gene family/categorization. I found sveral papers on family classification, but no actual pack…
Comment: pyCirclize - Circular visualization in Python
by
karenkvn
▴ 40
Thank you for this wonderful programme! I am plotting a bacterial chromosome and find that when I plot the NC_000913 chromosome using the e…
Comment: SKAT in R
by
Eliza
▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Comment: Snakemake workflow for trimmomatic
by
antoine.fauchois92
• 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
GenoMax
127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
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