2
votes
0
replies
73
views
0
votes
3
replies
295
views
updated 1 day ago by
Jordan M Eizenga
▴
740
•
written 2 days ago by
李经纬
•
0
5
votes
2
replies
913
views
updated 2 days ago by
michael.j.apostolides
▴
80
•
written 4.0 years ago by
kstangline
▴
100
1
vote
2
replies
238
views
1 day ago by
dxh0222
▴
10
0
votes
0
replies
158
views
updated 2 days ago by
GenoMax
153k
•
written 2 days ago by
fra.r.silvestro
▴
10
1
vote
1
reply
232
views
845
votes
170
replies
196k
views
112 follow
updated 4 months ago by
Biostar
3.6k
•
written 8.7 years ago by
Istvan Albert
103k
0
votes
0
replies
143
views
2
votes
3
replies
337
views
0
votes
3
replies
264
views
1
vote
3
replies
373
views
2
votes
3
replies
406
views
updated 2 days ago by
Jeremy Leipzig
23k
•
written 3 days ago by
stuckinanendlessfebruary
•
0
0
votes
0
replies
220
views
3 days ago by
Physalia-courses
★
2.6k
2
votes
5
replies
517
views
0
votes
0
replies
265
views
1
vote
4
replies
629
views
updated 3 days ago by
benformatics
4.1k
•
written 4 days ago by
biock
▴
70
0
votes
0
replies
285
views
1
vote
0
replies
327
views
2
votes
2
replies
2.3k
views
2
votes
2
replies
3.0k
views
0
votes
2
replies
588
views
0
votes
0
replies
334
views
4 days ago by
felix_langschied
•
0
0
votes
0
replies
324
views
0
votes
1
reply
415
views
updated 2 days ago by
Arup Ghosh
3.4k
•
written 5 days ago by
ramiro.barrantes
▴
60
0
votes
3
replies
1.3k
views
2
votes
2
replies
4.7k
views
updated 5 days ago by
colindaven
7.8k
•
written 5 days ago by
magatam
•
0
1
vote
2
replies
6.1k
views
2
votes
2
replies
5.9k
views
0
votes
0
replies
4.2k
views
1
vote
4
replies
13k
views
0
votes
3
replies
8.5k
views
updated 5 days ago by
yura.grabovska
▴
810
•
written 6 days ago by
R.L.
•
0
2
votes
2
replies
11k
views
0
votes
4
replies
9.2k
views
1
vote
0
replies
7.2k
views
0
votes
2
replies
14k
views
updated 6 days ago by
katherinedrotos
•
0
•
written 13 days ago by
Begonia_pavonina
▴
210
1
vote
1
reply
11k
views
updated 6 days ago by
jared.andrews07
★
19k
•
written 6 days ago by
Ayushman
•
0
0
votes
2
replies
10k
views
0
votes
0
replies
7.9k
views
0
votes
0
replies
7.9k
views
updated 6 days ago by
GenoMax
153k
•
written 6 days ago by
Transmitting Science communication
▴
70
0
votes
0
replies
7.9k
views
updated 6 days ago by
GenoMax
153k
•
written 6 days ago by
Transmitting Science communication
▴
70
0
votes
0
replies
8.0k
views
2
votes
2
replies
12k
views
updated 7 days ago by
kalavattam
▴
380
•
written 7 days ago by
张炘荣
•
0
0
votes
3
replies
10k
views
6
votes
3
replies
13k
views
updated 6 days ago by
ATpoint
89k
•
written 9 days ago by
HarperReed
•
0
0
votes
0
replies
8.0k
views
1
vote
7
replies
12k
views
6
votes
4
replies
9.2k
views
0
votes
0
replies
8.5k
views
9 days ago by
UCSDBioSci
▴
30
1
vote
1
reply
8.9k
views
updated 9 days ago by
Jouni Sirén
▴
760
•
written 9 days ago by
cassiwatt
▴
10
0
votes
1
reply
8.7k
views
Recent Votes
Recent Locations •
All
Canada, 5 minutes ago
Australia, 12 minutes ago
Taiwan, 28 minutes ago
Russia, 1 hour ago
Canada, 1 hour ago
Australia, 1 hour ago
United States, 1 hour ago
Recent Awards •
All
Popular Question to
AHerik
▴
40
Popular Question to
mohammedtoufiq91
▴
270
Popular Question to
Matteo Ungaro
▴
130
Popular Question to
anasjamshed
▴
140
Popular Question to
m90
▴
30
Recent Replies
Comment: Help with metagenomics viral
by
cfos4698
★
1.1k
It's possible/likely that your sequencing simply didn't recover any virus reads, despite RT-PCR detection. Often there is too much 'other s…
Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
Jordan M Eizenga
▴
740
I would say the answer is unfortunately no. It would be possible to make smaller individual XG indexes, but downstream subcommands in the V…
Comment: Question about substitution of KEGG
by
dxh0222
▴
10
Thanks for your recommendation! I think kofam_scan is suitable for me.
Comment: How to use CAFE from Orthofinder Results
by
san96
▴
190
Hi, are you referring to Orthogroups.GeneCount.tsv?
Thank you.
Comment: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴
80
For example you can see it here, this is the first one in the table (SRR1215996):
https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=ru…
Answer: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴
80
I believe here:
https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP025982
They are from the SEQC
https://www-nature-com.proxy3.library.…
Answer: Question about substitution of KEGG
by
Mensur Dlakic
★
29k
There is a tool that uses KEGG hidden Markov models and HMMer to scan individual proteins. It is not automated and may require some fiddlin…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
1769mkc
★
1.3k
DRAGEN are you using dragen 4.4 release for your workflow?
Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
by
Jeremy Leipzig
23k
Your strategy sounds ok but we would need to see your modified file and the exact command you ran to know what happened.
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
Arindam
▴
10
I think for mapping to the reference genome
Comment: Local Synteny Analysis with Uncharacterized Genes
by
Joe
22k
+1 for `clinker`, came here to make the same suggestion
Comment: Help with metagenomics viral
by
CECEL
•
0
Hi, thanks for answer!
I'm using Kraken2, but the classified reads, when put on BLAST, didn't returned nothing, even in Viruses_db...
Comment: How to obtain a refFlat file for the Rat
by
GenoMax
153k
You can't mix and match genomes and annotation as we discussed in the prior thread. Are you using the genome from UCSC, if you are using th…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
1769mkc
★
1.3k
"DRAGEN uses a newer method employing hashtables" you mean the reference builder?
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
李经纬
•
0
I use `vg construct --region chrom:start-end` to restrict graph to a chromosome region.
Traffic: 1808 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6