User: marongiu.luigi

gravatar for marongiu.luigi
Reputation:
380
Status:
Trusted
Location:
Germany, Mannheim, UMM
Last seen:
1 week, 5 days ago
Joined:
3 years, 7 months ago
Email:
m*************@gmail.com

Posts by marongiu.luigi

<prev • 335 results • page 1 of 34 • next >
0
votes
2
answers
1.4k
views
2
answers
Comment: C: Realign BAM files to other reference file
... Hi, what kind of 'not good'? I also found that recreating the fastq generates issues so I chose the second approach, merge the genome of reference in the other one and take it from there. ...
written 12 days ago by marongiu.luigi380
0
votes
2
answers
1.4k
views
2
answers
Comment: C: Realign BAM files to other reference file
... No, I realigned by coordinates as follows: # keep only pairs not aligned samtools view -u -f12 -F256 > # sort samtools sort -n -O BAM -o # convert bamToFastq -i -fq -fq2 ADDENDUM Anyway, I eventually used the following approach: (1) map to composite genome prim ...
written 13 days ago by marongiu.luigi380
0
votes
1
answer
126
views
1
answers
Comment: C: Retrieve family data using blastn command line
... I mentioned blastn because it has many options for retrieving codes, such as qseqid sseqid staxids sscinames. I thought it could retrieve also family names. ...
written 6 weeks ago by marongiu.luigi380
3
votes
1
answer
126
views
1
answer
Retrieve family data using blastn command line
... Dear all, it is possible to extract the family name of an organism using its version number and blastn command line? I have the accession code for some (actually many thousands) viruses, would be possible to determine what family do they belong? For instance, **NC_18874.1** should return *Herpe ...
genomes family name blast written 6 weeks ago by marongiu.luigi380 • updated 6 weeks ago by genomax68k
0
votes
0
answers
1.1k
views
0
answers
Comment: C: remote blast requires installation of taxdb database
... yes I did and also updated to blast 2.9 (I had 2.7). From NCBI they answered that the taxdb is required by 'sscinames' so I skipped that. I solved by grepping the taxonomy ID from the taxdb file. Less elegant but it works... ...
written 6 weeks ago by marongiu.luigi380
0
votes
0
answers
1.1k
views
0
answers
Comment: C: remote blast requires installation of taxdb database
... I also have this problem Is there any update? ...
written 7 weeks ago by marongiu.luigi380
0
votes
1
answer
302
views
1
answers
Comment: C: Oases Makefile:114: recipe for target 'obj/oases.o' failed
... I can see that: latex was missing and now it worked: `oases - Version 0.2.08` installed, thank you. ...
written 10 weeks ago by marongiu.luigi380
0
votes
1
answer
302
views
1
answers
Comment: C: Oases Makefile:114: recipe for target 'obj/oases.o' failed
... The OS is Ubuntu 18 with GCC 7.3.0. I tried also the absolute path but there is a still error: cd doc; make make[1]: Entering directory '/home/gigiux/src/oases/doc' cd manual && make make[2]: Entering directory '/home/gigiux/src/oases/doc/manual' pdflatex OasesManual ...
written 10 weeks ago by marongiu.luigi380
0
votes
1
answer
128
views
1
answers
Comment: C: How to define several regions in GFF3 file?
... Yep, I think you are right: the ID needs to be unique even for the different regions. Thanks. ...
written 11 weeks ago by marongiu.luigi380
0
votes
1
answer
302
views
1
answers
Comment: C: Oases Makefile:114: recipe for target 'obj/oases.o' failed
... but without such fun i wouldn't learn, would I? ...
written 11 weeks ago by marongiu.luigi380

Latest awards to marongiu.luigi

Popular Question 6 weeks ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 6 weeks ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 3 months ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 3 months ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Popular Question 3 months ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 4 months ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Great Question 4 months ago, created a question with more than 5,000 views. For run FASTQC on linux terminal as java script
Great Question 5 months ago, created a question with more than 5,000 views. For run FASTQC on linux terminal as java script
Popular Question 5 months ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 6 months ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 6 months ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Popular Question 6 months ago, created a question with more than 1,000 views. For whole genome fasta/gtf for cell lines
Popular Question 7 months ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 7 months ago, created a question with more than 1,000 views. For Trimmomatic becomes sleeping process
Popular Question 8 months ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Scholar 9 months ago, created an answer that has been accepted. For A: Realign BAM files to other reference file
Popular Question 9 months ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Supporter 10 months ago, voted at least 25 times.
Popular Question 11 months ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Realign BAM files to other reference file
Popular Question 12 months ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Popular Question 13 months ago, created a question with more than 1,000 views. For GRCh38 toplevel fasta is empty
Centurion 15 months ago, created 100 posts.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1032 users visited in the last hour