User: DataStoryTeller

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Posts by DataStoryTeller

<prev • 18 results • page 1 of 2 • next >
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Forum: What programming language do you use the most in your work? Which one do you like the best?
... Which language do you use the most in your work? Which language do you prefer? With regards to programming language, which direction do you see the bioinformatics field going? Thanks! ...
R forum python scripting programming written 14 days ago by DataStoryTeller30 • updated 13 days ago by 5heikki9.3k
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I am having trouble running tmodhg with ECC library?
... ECC.gmt <- read.gmt("~/Desktop/Research/Tools_and_Databases/gmtfiles/ENCODE_and_ChEA_Consensus_TFs_from_ChIP-X.gmt") #-------------------------------------------------------# # Hypergeometric Enrichment # create a character vector of DEGs that are up and down - fix for your data ...
tmodhg microarray analysis written 3 months ago by DataStoryTeller30 • updated 12 weeks ago by cpad011215k
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Comment: C: I am having trouble downloading msigdb_v7.2.xml
... This works thank you so much! ...
written 3 months ago by DataStoryTeller30
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I am having trouble downloading msigdb_v7.2.xml
... ![https://ibb.co/LhrLksC][1] Look at the linked image. I do not know why I cannot download this file. This is what happens when I try to download msigdb_v7.2.xml [1]: https://i.ibb.co/mF0LDPH/Screen-Shot-2020-11-17-at-12-21-55-PM.png ...
msigdb written 3 months ago by DataStoryTeller30 • updated 3 months ago by GenoMax96k
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Need some help with next steps after getting fGSEA results from Microarray data.
... Hello all! I am relatively new to bioinformatics. I am currently a PhD student who works on the data science side of bioinformatics. I currently work with Microarray and RNAseq data but plan on working with other NGS data. I want to be good at what I do and understand the decision making process beh ...
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Answer: A: Getting error when using lmfit (LIMMA) for Microarray data analysis
... This is solved thank you for your help. I'm sorry I took up so much of both your time. It was as simple as reinstalling the limma package. Thank you so much for your help, its been essential! ...
written 5 months ago by DataStoryTeller30
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Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
... What do you use instead of RStudio?, I did try a fresh r ression. I'll try restarting my computer ...
written 5 months ago by DataStoryTeller30
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Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
... Do you use Mac OS, because even when i run this lmfit is not working. Could this be a Mac issue. Im going to try to download the data again. EDIT: I still get the same error setwd("/Users/ashaypatel/Desktop/Research/GSE5281") #Set Working directory celpath<-"~/Desktop/Research/GSE5281" ...
written 5 months ago by DataStoryTeller30 • updated 5 months ago by ATpoint45k
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Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
... So I fixed that error. It seems to be one of data type which is strange. If I use PreProcessedDataframe instead of PreProcessedData is works. However now I need help with annotation. It won't let me use fdata to annotate here is my code: ``` #Get Raw Data from cell files setwd("/Users/as ...
written 5 months ago by DataStoryTeller30
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Comment: C: Getting error when using lmfit (LIMMA) for Microarray data analysis
... Sorry, because my account is new, it woudn't let me post more. No this does not work. I did recently update my mac os to catalina 10.15.6 ...
written 5 months ago by DataStoryTeller30

Latest awards to DataStoryTeller

Scholar 5 months ago, created an answer that has been accepted. For A: Getting error when using lmfit (LIMMA) for Microarray data analysis

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