User: Elisabeth Gasteiger

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Geneva
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http://www.uniprot.org/
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Joined:
9 years, 3 months ago
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Posts by Elisabeth Gasteiger

<prev • 207 results • page 1 of 21 • next >
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Comment: C: extract publication titles based on accession number from uniprot in python
... What kind of identifiers do you have if not UniProt identifiers? Have you had a look at the REST API of the UniProt website, https://www.uniprot.org/help/api ? ...
written 4 weeks ago by Elisabeth Gasteiger1.9k
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Answer: A: Uniprot different names / aliases
... You can configure the output format of your search result table to include the columns you want, and then download the results in tab- delimited format. This can be done for any query, including the wildcard query "*" which allows you to retrieve all entries. See https://www.uniprot.org/help/custom ...
written 4 weeks ago by Elisabeth Gasteiger1.9k
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Comment: C: Batch download UniProt proteomes with list of proteome IDs
... This RESTful URL should work: https://www.uniprot.org/uniprot/?query=proteome:UP000005640&format=fasta Please contact the UniProt helpdesk if the problem persists. If you include your code, we can look into your problem in detail. ...
written 4 weeks ago by Elisabeth Gasteiger1.9k
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Comment: C: Where/how do proteins with "-like" in their names get their names?
... > "As an aside here, do imported protein names (such as the one in my > example) get reviewed (and potentially re-annotated) by ARBA?" Yes. At every release, sequences go through the automatic annotation pipelines (see also https://www.uniprot.org/help/automatic_annotation) and if the conditi ...
written 6 weeks ago by Elisabeth Gasteiger1.9k
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Answer: A: Where/how do proteins with "-like" in their names get their names?
... In a UniProt entry, it is important to look at the evidence label in order to be able to distinguish - expert-curated and reviewed annotation - automatic annotation - information imported from an external database See https://www.uniprot.org/help/evidences Looking at the entries you cite: ...
written 6 weeks ago by Elisabeth Gasteiger1.9k
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Answer: A: Retrieve all proteomes from UniProt by taxid
... You may want to have a look at this UniProt help page https://www.uniprot.org/help/api_downloading Reference proteomes are also available for download from our FTP server, at https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/ Please don't hesitate to ...
written 6 weeks ago by Elisabeth Gasteiger1.9k
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Answer: A: Prediction of domains of a protein and LRR domains
... InterPro https://www.ebi.ac.uk/interpro/ ScanProsite https://prosite.expasy.org/scanprosite/ PROSITE LRR profile: https://prosite.expasy.org/PDOC51450 InterPro LRR: https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001611/ ...
written 10 weeks ago by Elisabeth Gasteiger1.9k
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Answer: A: Translating a noval DNA sequence to protein
... For a very basic nucleotide to protein sequence translation tool you could try the Expasy Translate tool: https://web.expasy.org/translate/ ...
written 11 weeks ago by Elisabeth Gasteiger1.9k
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Comment: C: biomaRt error while converting ensembl gene Id to uniprot ID
... Yes, this is the EBI Proteins REST API. Other ways to access UniProt programmatically, including the website API, are listed here: https://www.uniprot.org/help/programmatic_access ...
written 12 weeks ago by Elisabeth Gasteiger1.9k
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News: UniProt survey: Tell us what protein information is important to you
... Please consider filling in this survey, on behalf of UniProt: As biological data is growing at an exponential rate, we also have to prioritise the protein information we present. In order to help us provide the data that is important to you, we would be grateful if you could fill in a short survey ...
genome proteome database news uniprot written 12 weeks ago by Elisabeth Gasteiger1.9k

Latest awards to Elisabeth Gasteiger

Scholar 12 weeks ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Scholar 12 weeks ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Popular Question 9 months ago, created a question with more than 1,000 views. For Uniprotkb Accession Number Format To Be Extended To 10 Characters
Popular Question 9 months ago, created a question with more than 1,000 views. For Welcome to the new UniProt beta site!
Good Answer 10 months ago, created an answer that was upvoted at least 5 times. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Supporter 16 months ago, voted at least 25 times.
Scholar 17 months ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Appreciated 23 months ago, created a post with more than 5 votes. For C: Proteins without genes ? Is that even possible ?
Popular Question 24 months ago, created a question with more than 1,000 views. For Welcome to the new UniProt beta site!
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 3.0 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 3.1 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 3.6 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: Proteins without genes ? Is that even possible ?
Guru 4.0 years ago, received more than 100 upvotes.
Popular Question 4.1 years ago, created a question with more than 1,000 views. For Uniprotkb Accession Number Format To Be Extended To 10 Characters
Scholar 4.1 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Centurion 4.6 years ago, created 100 posts.
Appreciated 4.6 years ago, created a post with more than 5 votes. For C: Proteins without genes ? Is that even possible ?

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