User: Elisabeth Gasteiger

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http://www.uniprot.org/
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Joined:
9 years ago
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Posts by Elisabeth Gasteiger

<prev • 200 results • page 1 of 20 • next >
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Answer: A: Translating a noval DNA sequence to protein
... For a very basic nucleotide to protein sequence translation tool you could try the Expasy Translate tool: https://web.expasy.org/translate/ ...
written 4 days ago by Elisabeth Gasteiger1.8k
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Comment: C: biomaRt error while converting ensembl gene Id to uniprot ID
... Yes, this is the EBI Proteins REST API. Other ways to access UniProt programmatically, including the website API, are listed here: https://www.uniprot.org/help/programmatic_access ...
written 8 days ago by Elisabeth Gasteiger1.8k
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News: UniProt survey: Tell us what protein information is important to you
... Please consider filling in this survey, on behalf of UniProt: As biological data is growing at an exponential rate, we also have to prioritise the protein information we present. In order to help us provide the data that is important to you, we would be grateful if you could fill in a short survey ...
genome proteome database news uniprot written 8 days ago by Elisabeth Gasteiger1.8k
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Answer: A: How to connect uniprot and rhea?
... The thread is old and I missed that I was tagged in a comment, sorry. If you are interested in connecting Rhea and UniProt, you may find this publication useful: Morgat A, Lombardot T, Coudert E, Axelsen K, Neto TB, Gehant S, Bansal P, Bolleman J, Gasteiger E, de Castro E, Baratin D, Pozzato M, Xen ...
written 8 days ago by Elisabeth Gasteiger1.8k
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Answer: A: biomaRt error while converting ensembl gene Id to uniprot ID
... Have you tried the UniProt IDmapping service at https://www.uniprot.org/uploadlists ? It allows to map gene names from and to UniProtKB ACs, you can specifiy an optional organism name and use it programmatically too if necessary (https://www.uniprot.org/help/api%5Fidmapping). ...
written 8 days ago by Elisabeth Gasteiger1.8k
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Answer: A: What is the difference between Uniprot Accession Numbers that start with O, P, o
... Confirmation from UniProt: Indeed accession numbers have no meaning and just serve as unique identifiers. This is the short answer, and below is some background: Originally, accession numbers started with P, later with O, P and Q, but due to the large increase in the number of protein sequences i ...
written 9 days ago by Elisabeth Gasteiger1.8k
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Answer: A: Script to obtain human protein sequences by the gene symbols
... You can also use UniProt's IDmapping tool at https://www.uniprot.org/uploadlists to map from gene names to UniProtKB, and then download the results in FASTA format. ...
written 3 months ago by Elisabeth Gasteiger1.8k
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Answer: A: What is the best public database for Homo-sapiens proteins ?
... You can upload your list of proteins using the batch retrieve service on the UniProt website (https://www.uniprot.org/uploadlists). Once you have your results, you can customize the layout of the table by adding or removing columns: Click on "Columns" and then start typing "Pfam" (or "domain", for ...
written 5 months ago by Elisabeth Gasteiger1.8k
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Answer: A: protein databases with GI numbers
... If you have UniProtKB identifiers for your proteins, you can try the UniProt IDmapping tool at https://www.uniprot.org/uploadlists to map from UniProt to GI numbers. However, the underlying data is based on the GI numbers that existed before NCBI obsoleted them, and the tool may therefore not be abl ...
written 8 months ago by Elisabeth Gasteiger1.8k
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Answer: A: How do I get FASTA if i have a protein ID (in 10000's) ?
... You can upload your list of identifiers to the UniProt batch retrieval tool at https://www.uniprot.org/uploadlists Please don't hesitate to contact the UniProt helpdesk if you have any additional questions. ...
written 8 months ago by Elisabeth Gasteiger1.8k

Latest awards to Elisabeth Gasteiger

Scholar 8 days ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Scholar 9 days ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 9 days ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Popular Question 6 months ago, created a question with more than 1,000 views. For Uniprotkb Accession Number Format To Be Extended To 10 Characters
Popular Question 6 months ago, created a question with more than 1,000 views. For Welcome to the new UniProt beta site!
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Supporter 13 months ago, voted at least 25 times.
Scholar 14 months ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Appreciated 21 months ago, created a post with more than 5 votes. For C: Proteins without genes ? Is that even possible ?
Popular Question 21 months ago, created a question with more than 1,000 views. For Welcome to the new UniProt beta site!
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 2.8 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 2.9 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 3.4 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Proteins without genes ? Is that even possible ?
Guru 3.8 years ago, received more than 100 upvotes.
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Uniprotkb Accession Number Format To Be Extended To 10 Characters
Scholar 3.9 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Centurion 4.4 years ago, created 100 posts.
Appreciated 4.4 years ago, created a post with more than 5 votes. For C: Proteins without genes ? Is that even possible ?

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