User: Elisabeth Gasteiger

Reputation:
1,680
Status:
Trusted
Location:
Geneva
Website:
http://www.uniprot.org/
Last seen:
an hour ago
Joined:
8 years, 1 month ago
Email:
e******************@gmail.com

Posts by Elisabeth Gasteiger

<prev • 188 results • page 1 of 19 • next >
1
vote
1
answer
102
views
1
answers
Answer: A: UniProt: Change of FT and CC section in UniProtKB text format
... Just a brief reminder about this upcoming format change - if you are parsing UniProtKB text format, your code is likely to stumble over this. Please have a look at the announcements! ...
written 1 day ago by Elisabeth Gasteiger1.7k
1
vote
0
answers
43
views
0
answers
Comment: C: problem using UniprotR's " GetFamily_Domains() "
... Your URL seems correct in principle, and the http request is redirected to https. But it might help to use https instead of http straightaway? I'm not familiar with this R package. https://www.uniprot.org/uniprot/?query=accession:Q9HCE5&format=tab&columns=comment(DOMAIN),comment(SIMILARITY) ...
written 11 days ago by Elisabeth Gasteiger1.7k
1
vote
1
answer
122
views
1
answers
Comment: C: Searching NCBI database for proteins with specific C terminus
... Yes, you are right, `sequence>` anchors `sequence` to the C-terminus. Thanks for spotting my mistake! ...
written 4 weeks ago by Elisabeth Gasteiger1.7k
2
votes
1
answer
122
views
1
answers
Answer: A: Searching NCBI database for proteins with specific C terminus
... You can use ScanProsite to submit MOTIFS to scan them against a PROTEIN sequence database: https://prosite.expasy.org/scanprosite/ Select option 2 and submit the N-terminal sequence, preceeded by "<" to anchor the sequence to the N-terminus: ...
written 4 weeks ago by Elisabeth Gasteiger1.7k
0
votes
0
answers
90
views
0
answers
News: UniProt: Change of annotation topic 'Interaction'
... Not before December 11, 2019 In the context of improving the [functional annotation of different gene products][1] in UniProtKB/Swiss-Prot, we are going to import more detailed data from [IntAct][2]. Our current representation of a binary protein-protein interaction provides details only for the pr ...
xml news format interaction uniprot written 8 weeks ago by Elisabeth Gasteiger1.7k
0
votes
0
answers
70
views
0
answers
News: UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
... Not before December 11, 2019 To reduce [database redundancy][1], the UniProtKB/Swiss-Prot policy is to describe, whenever possible, all protein products that are encoded by one gene in a given species in a single entry. This includes [isoforms][2] generated by alternative promoter usage, alternativ ...
format news uniprot xml protein parsing written 8 weeks ago by Elisabeth Gasteiger1.7k
0
votes
0
answers
67
views
0
answers
News: UniProt: Changes to Proteomes
... Not before December 11, 2019 The [UniProt Proteomes portal][1] is currently offering protein sequence sets obtained from the translation of completely sequenced genomes. Published genomes from [NCBI Genome][2] are brought into UniProt if they satisfy the following criteria: - The genome is annota ...
proteome news uniprot written 8 weeks ago by Elisabeth Gasteiger1.7k
0
votes
0
answers
72
views
0
answers
News: UniProt: Change of line length in UniProtKB text format
... Not before December 11, 2019 Historically, the lines of the UniProtKB text format have been wrapped at 75 characters for technical reasons (terminal screen size and data processing capabilities). When these technical restrictions vanished, we introduced exceptions for data like URLs, protein names ...
news format uniprot written 8 weeks ago by Elisabeth Gasteiger1.7k
2
votes
1
answer
102
views
1
answer
News: UniProt: Change of FT and CC section in UniProtKB text format
... Not before December 11, 2019 We are going to change the format of the [FT (feature table)][1] and [CC (comments)][2] sections of the UniProtKB text files. The changes of the FT section will likely affect all parsers and software will have to be adapted accordingly. The changes of the CC section are ...
news format protein uniprot parsing written 8 weeks ago by Elisabeth Gasteiger1.7k
1
vote
2
answers
178
views
2
answers
Answer: A: uniprot variant classification DB retireve
... Are you aware of the UniProt index of human polymorphisms and disease mutations, https://www.uniprot.org/docs/humsavar ? This file lists all missense variants annotated in human UniProtKB/Swiss-Prot entries. It provides a variant classification (which is intended for research purposes only, not for ...
written 4 months ago by Elisabeth Gasteiger1.7k

Latest awards to Elisabeth Gasteiger

Supporter 8 weeks ago, voted at least 25 times.
Scholar 12 weeks ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Appreciated 9 months ago, created a post with more than 5 votes. For C: Proteins without genes ? Is that even possible ?
Popular Question 10 months ago, created a question with more than 1,000 views. For Welcome to the new UniProt beta site!
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 22 months ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 23 months ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Isoforms Missing In Uniprot Isoforms Fasta File
Scholar 2.5 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Proteins without genes ? Is that even possible ?
Guru 2.9 years ago, received more than 100 upvotes.
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Uniprotkb Accession Number Format To Be Extended To 10 Characters
Scholar 2.9 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Centurion 3.4 years ago, created 100 posts.
Appreciated 3.4 years ago, created a post with more than 5 votes. For C: Proteins without genes ? Is that even possible ?
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: Proteins without genes ? Is that even possible ?
Scholar 3.5 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: Proteins without genes ? Is that even possible ?
Scholar 3.6 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: Proteins without genes ? Is that even possible ?
Scholar 4.1 years ago, created an answer that has been accepted. For A: How do MetaCyc and Expasy Enzyme database contents relate to each other?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2049 users visited in the last hour