Moderator: Arup Ghosh

gravatar for Arup Ghosh
Arup Ghosh2.7k
Reputation:
2,660
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Trusted
Location:
India
Website:
https://arup.dev/
Twitter:
arupgsh
Scholar ID:
Google Scholar Page
Last seen:
4 hours ago
Joined:
4 years, 9 months ago
Email:
a*******@gmail.com

PhD student @ Institute of Life Science, Bhubaneswar

Posts by Arup Ghosh

<prev • 339 results • page 1 of 34 • next >
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Comment: C: Change Y axis font size wit Scanpy
... The same has been answered in this SO thread: https://stackoverflow.com/questions/63925267/how-to-change-font-size-in-scanpy ...
written 23 hours ago by Arup Ghosh2.7k
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Comment: C: Error while converting sra to fastq
... Have you checked the `vdb-config` (`vdb-config -i `) file? ...
written 3 days ago by Arup Ghosh2.7k
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Comment: C: For loop error for merging HTSeq counts
... Why you are not using featureCounts? ...
written 5 weeks ago by Arup Ghosh2.7k
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Answer: C: ERROR while adding gene names
... Use `keytype = "ENSEMBLTRANS"`. ...
written 5 weeks ago by Arup Ghosh2.7k
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Comment: C: peoblem with trimmomatic
... Make sure the adapter sequence file is properly formatted and present in the location you have mentioned. ...
written 6 weeks ago by Arup Ghosh2.7k
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Comment: C: Circos plot with heatmap
... Check the methylation example in [circlize][1]. [1]: https://jokergoo.github.io/circlize_book/book/circos-heatmap.html ...
written 7 weeks ago by Arup Ghosh2.7k
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Comment: C: Human mitochondrial DNA annotation in SnpEff
... Click on `Send to` option on the top right corner of the page. ![enter image description here][1] [1]: https://i.imgur.com/fEdZr4Y.png ...
written 8 weeks ago by Arup Ghosh2.7k
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Comment: C: KissDE doesn't work with R 4.0.2 (?)
... Use docker or conda environments to avoid dependency conflicts and version issues. ...
written 9 weeks ago by Arup Ghosh2.7k
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Answer: A: Download multiple fastq files
... Save the links in a text file and use GNU parallel with wget to download the files simultaneously. parallel --verbose "wegt {}" ::: $(cat download.txt) If you want to use multiple connections for download use [aria2][1]. parallel --verbose "aria2c -x {}" ::: $(cat download.txt) [1]: h ...
written 9 weeks ago by Arup Ghosh2.7k
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Comment: C: venn diagram of rna seq and microarray datasets
... Before comparing the lists convert the array ids to the ensemble gene ids. Check the attached thread to know how to convert microarray ids. https://www.biostars.org/p/76097/ ...
written 9 weeks ago by Arup Ghosh2.7k

Latest awards to Arup Ghosh

Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Good Answer 6 weeks ago, created an answer that was upvoted at least 5 times. For A: How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly ident
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 3 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 3 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Scholar 3 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Scholar 5 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 6 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Popular Question 7 months ago, created a question with more than 1,000 views. For Seurat vs Monocle
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Commentator 10 months ago, created a comment with at least 3 up-votes. For C: Errors with SRA-toolkit: not enough space on the disk. (112)
Scholar 11 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: Errors with SRA-toolkit: not enough space on the disk. (112)
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 12 months ago, created an answer that has been accepted. For A: scatter plot in ggplot2 two colour for two different condition
Scholar 12 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Good Answer 12 months ago, created an answer that was upvoted at least 5 times. For A: How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly ident
Scholar 12 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio

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