User: arup

gravatar for arup
arup230
Reputation:
230
Status:
Trusted
Location:
India
Website:
http://www.wptron.com/
Twitter:
arupgsh
Scholar ID:
Google Scholar Page
Last seen:
3 days, 17 hours ago
Joined:
2 years, 4 months ago
Email:
a*******@yahoo.co.uk

JRF @ Institute of Life Science, Bhubaneswar

Posts by arup

<prev • 52 results • page 1 of 6 • next >
1
vote
1
answer
282
views
1
answers
Comment: C: Differential expression gene analysis
... Why you removed the gene name in the first place? If you are sure about 20530 will map to 20530th gene then merge the gene_id with res. ...
written 4 weeks ago by arup230
0
votes
1
answer
282
views
1
answers
Comment: C: Differential expression gene analysis
... How will you get any info if you are using a count matrix without gene id? ...
written 4 weeks ago by arup230
0
votes
0
answers
140
views
0
answers
Comment: C: Differential Coexpression Analysis
... Do you want to build a co-expression network? https://www.youtube.com/watch?v=OdqDE5EJSlA https://github.com/arupgsh/2016-summer-workshop/tree/master/3B-Hughitt-RNASeq-Coex-Network-Analysis ...
written 6 weeks ago by arup230
1
vote
2
answers
232
views
2
answers
Comment: C: How to retrieve article ids list from pubmed
... This tutorial will help, [https://www.tutorialspoint.com/python/python_database_access.htm][1] . Please mark the answer as accepted. [1]: https://www.tutorialspoint.com/python/python_database_access.htm ...
written 8 weeks ago by arup230
1
vote
2
answers
232
views
2
answers
Comment: C: How to retrieve article ids list from pubmed
... Sorry, what do you mean by "urls of specific word"? If you are talking about article URLs, use https://www.ncbi.nlm.nih.gov/pubmed/ as base URL and add the fetched PMIDs after it. ...
written 8 weeks ago by arup230
0
votes
2
answers
232
views
2
answers
Comment: C: How to retrieve article ids list from pubmed
... thanks for the suggestion. ...
written 8 weeks ago by arup230
1
vote
2
answers
232
views
2
answers
Answer: A: How to retrieve article ids list from pubmed
... Use Biopython. An example, `cancer` as a search term. from Bio import Entrez Entrez.email = "yourmail@gmail.com" handle = Entrez.esearch(db="pubmed", term="cancer", retmax="10", sort="relevance", retmode="xml") records = Entrez.read(handle) print(records["IdList"]) ...
written 8 weeks ago by arup230
0
votes
0
answers
638
views
0
answers
Comment: C: Obtaining Quality score of the mapped sequences - BBMap
... missing **'** after > awk -F "\t" '{print $5} ...
written 9 weeks ago by arup230
1
vote
2
answers
231
views
2
answers
Answer: A: Cufflinks and StringTie
... Compare the list of the transcript from both of the outputs with R/Python or just use [jvenn][1] with the list of transcripts. [1]: http://jvenn.toulouse.inra.fr/app/example.html ...
written 9 weeks ago by arup230
1
vote
2
answers
308
views
2
answers
Comment: C: Batch Renaming Files
... I don't know why it didn't work in your computer here I attached a [GIF Animation.][1] [1]: https://ibb.co/carxQn ...
written 9 weeks ago by arup230

Latest awards to arup

Scholar 11 weeks ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Supporter 11 weeks ago, voted at least 25 times.
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 942 users visited in the last hour