User: arup

gravatar for arup
arup1.9k
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Website:
http://arupgsh.github.io/
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1 day, 3 hours ago
Joined:
3 years, 11 months ago
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PhD student @ Institute of Life Science, Bhubaneswar

Posts by arup

<prev • 228 results • page 1 of 23 • next >
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Comment: C: Extract genes sequence from .gb file
... Check this thread https://www.biostars.org/p/249500/ . ...
written 12 days ago by arup1.9k
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Comment: C: Bulk Query with ExAC REST API in Python
... Have you checked the [Bulk Query][1] section? [1]: http://exac.hms.harvard.edu/#Bulk ...
written 18 days ago by arup1.9k
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Answer: C: bcl2fastq can't find config.xml
... Looks like bcl2fastq-1.8.4 is not compatible with the default Perl version of Centos 7. Use the latest version of [Bcl2Fastq][1], download and install the RPM file. [1]: https://sapac.support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software/downloads.html ...
written 24 days ago by arup1.9k
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Comment: C: Plotting .tab/.bam file
... A similar topic has been discussed in https://www.biostars.org/p/104063/. Tab file (.tab) is just another text file where the columns are tab-separated, read the `pileup.tab` file using pandas and plot using pyplot. ...
written 5 weeks ago by arup1.9k
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Answer: C: Hisat2 index mm10 download
... Download the indexes from the Hisat2 website. ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/data ...
written 7 weeks ago by arup1.9k
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Comment: C: Bowtie 2 with remote index
... Set up a NAS if all the containers are to be deployed in local network. ...
written 7 weeks ago by arup1.9k
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Answer: C: differences between featureCounts and htseq-count
... https://www.biostars.org/p/96176/ ...
written 7 weeks ago by arup1.9k • updated 7 weeks ago by ATpoint25k
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Answer: C: How I know a file is sam or bam, sorted or unsorted
... Check the error log if STAR had any memory issues, `--outSAMtype BAM SortedByCoordinate` is supposed to sort the output. ...
written 10 weeks ago by arup1.9k
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Comment: C: How I know a file is sam or bam, sorted or unsorted
... Yes the output is unsorted. ...
written 10 weeks ago by arup1.9k
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Comment: C: Where can I find GATK SNP calling VCF for NA12878 exome?
... I guess this is what you are looking for > ftp://ftp-trace.ncbi.nih.gov/giab/ftp/release/NA12878_HG001/ ...
written 10 weeks ago by arup1.9k

Latest awards to arup

Commentator 3 days ago, created a comment with at least 3 up-votes. For C: Errors with SRA-toolkit: not enough space on the disk. (112)
Scholar 24 days ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: Errors with SRA-toolkit: not enough space on the disk. (112)
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 8 weeks ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Scholar 8 weeks ago, created an answer that has been accepted. For A: scatter plot in ggplot2 two colour for two different condition
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Good Answer 10 weeks ago, created an answer that was upvoted at least 5 times. For A: How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly ident
Scholar 11 weeks ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 4 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Guru 7 months ago, received more than 100 upvotes.
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Scholar 9 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]

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