User: arup

gravatar for arup
arup210
Reputation:
210
Status:
Trusted
Location:
India
Website:
http://www.wptron.com/
Twitter:
arupgsh
Scholar ID:
Google Scholar Page
Last seen:
2 hours ago
Joined:
2 years, 3 months ago
Email:
a*******@yahoo.co.uk

JRF @ Institute of Life Science, Bhubaneswar

Posts by arup

<prev • 49 results • page 1 of 5 • next >
1
vote
1
answer
101
views
1
answers
Comment: C: How to retrieve article ids list from pubmed
... This tutorial will help, [https://www.tutorialspoint.com/python/python_database_access.htm][1] . Please mark the answer as accepted. [1]: https://www.tutorialspoint.com/python/python_database_access.htm ...
written 10 hours ago by arup210
1
vote
1
answer
101
views
1
answers
Comment: C: How to retrieve article ids list from pubmed
... Sorry, what do you mean by "urls of specific word"? If you are talking about article URLs, use https://www.ncbi.nlm.nih.gov/pubmed/ as base URL and add the fetched PMIDs after it. ...
written 1 day ago by arup210
0
votes
1
answer
101
views
1
answers
Comment: C: How to retrieve article ids list from pubmed
... thanks for the suggestion. ...
written 2 days ago by arup210
1
vote
1
answer
101
views
1
answers
Answer: A: How to retrieve article ids list from pubmed
... Use Biopython. An example, `cancer` as a search term. from Bio import Entrez Entrez.email = "yourmail@gmail.com" handle = Entrez.esearch(db="pubmed", term="cancer", retmax="10", sort="relevance", retmode="xml") records = Entrez.read(handle) print(records["IdList"]) ...
written 2 days ago by arup210
0
votes
0
answers
475
views
0
answers
Comment: C: Obtaining Quality score of the mapped sequences - BBMap
... missing **'** after > awk -F "\t" '{print $5} ...
written 5 days ago by arup210
1
vote
2
answers
107
views
2
answers
Answer: A: Cufflinks and StringTie
... Compare the list of the transcript from both of the outputs with R/Python or just use [jvenn][1] with the list of transcripts. [1]: http://jvenn.toulouse.inra.fr/app/example.html ...
written 9 days ago by arup210
1
vote
2
answers
221
views
2
answers
Comment: C: Batch Renaming Files
... I don't know why it didn't work in your computer here I attached a [GIF Animation.][1] [1]: https://ibb.co/carxQn ...
written 11 days ago by arup210
0
votes
2
answers
221
views
2
answers
Comment: C: Batch Renaming Files
... Can you share error you are getting or first few lines of the csv file you are using, the script working perfectly fine in my computer with multiple file name as input. ...
written 13 days ago by arup210
0
votes
1
answer
204
views
1
answers
Answer: A: scatter plot in ggplot2 two colour for two different condition
... The plot is in a 2D plane which means each point has two values associated with it (x,y) in this plane. in your case, each point is a gene and has (wt_mean,atra_mean) as coordinate. So, I don't get the point of coloring on the basis of wt_mean and atra_mean. What are you trying to infer? The plot y ...
written 14 days ago by arup210
2
votes
2
answers
128
views
2
answers
Answer: A: Building a Network from gene expression data
... Only with the gene expression data, a co-expression network is possible, but not directly gene regulatory networks. Co-expression networks only group the genes having a similar expression pattern that may or may not have any biological meaning. For gene regulatory networks you have to take transcrip ...
written 14 days ago by arup210

Latest awards to arup

Scholar 25 days ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Supporter 25 days ago, voted at least 25 times.
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1672 users visited in the last hour