User: arup
arup • 230
- Reputation:
- 230
- Status:
- Trusted
- Location:
- India
- Website:
- http://www.wptron.com/
- Twitter:
- arupgsh
- Scholar ID:
- Google Scholar Page
- Last seen:
- 3 days, 17 hours ago
- Joined:
- 2 years, 4 months ago
- Email:
- a*******@yahoo.co.uk
JRF @ Institute of Life Science, Bhubaneswar
Posts by arup
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... Why you removed the gene name in the first place? If you are sure about 20530 will map to 20530th gene then merge the gene_id with res. ...
written 4 weeks ago by
arup • 230
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... How will you get any info if you are using a count matrix without gene id? ...
written 4 weeks ago by
arup • 230
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... Do you want to build a co-expression network?
https://www.youtube.com/watch?v=OdqDE5EJSlA
https://github.com/arupgsh/2016-summer-workshop/tree/master/3B-Hughitt-RNASeq-Coex-Network-Analysis ...
written 6 weeks ago by
arup • 230
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... This tutorial will help, [https://www.tutorialspoint.com/python/python_database_access.htm][1] .
Please mark the answer as accepted.
[1]: https://www.tutorialspoint.com/python/python_database_access.htm ...
written 8 weeks ago by
arup • 230
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... Sorry, what do you mean by "urls of specific word"? If you are talking about article URLs, use https://www.ncbi.nlm.nih.gov/pubmed/ as base URL and add the fetched PMIDs after it. ...
written 8 weeks ago by
arup • 230
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... thanks for the suggestion. ...
written 8 weeks ago by
arup • 230
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... Use Biopython.
An example, `cancer` as a search term.
from Bio import Entrez
Entrez.email = "yourmail@gmail.com"
handle = Entrez.esearch(db="pubmed", term="cancer", retmax="10", sort="relevance", retmode="xml")
records = Entrez.read(handle)
print(records["IdList"])
...
written 8 weeks ago by
arup • 230
0
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638
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... missing **'** after
> awk -F "\t" '{print $5} ...
written 9 weeks ago by
arup • 230
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Answer:
A: Cufflinks and StringTie
... Compare the list of the transcript from both of the outputs with R/Python or just use [jvenn][1] with the list of transcripts.
[1]: http://jvenn.toulouse.inra.fr/app/example.html ...
written 9 weeks ago by
arup • 230
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Comment:
C: Batch Renaming Files
... I don't know why it didn't work in your computer here I attached a [GIF Animation.][1]
[1]: https://ibb.co/carxQn ...
written 9 weeks ago by
arup • 230
Latest awards to arup
Scholar
11 weeks ago,
created an answer that has been accepted.
For A: How can I uninstall my packages in Rstudio
Supporter
11 weeks ago,
voted at least 25 times.
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: Visualising BedGraph files on UCSC [custom tracks]
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