Moderator: Arup Ghosh

gravatar for Arup Ghosh
Arup Ghosh2.1k
Reputation:
2,110
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Trusted
Location:
India
Website:
http://arupgsh.github.io/
Twitter:
arupgsh
Scholar ID:
Google Scholar Page
Last seen:
22 minutes ago
Joined:
4 years, 2 months ago
Email:
a*******@gmail.com

PhD student @ Institute of Life Science, Bhubaneswar

Posts by Arup Ghosh

<prev • 254 results • page 1 of 26 • next >
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Comment: C: Bedtools intersect vcf and bed files
... Do your intersection script also contains variant calling commands? ...
written 41 minutes ago by Arup Ghosh2.1k
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Comment: C: Generate count table using Samtools
... Please include a link to the article you are talking about. ...
written 1 hour ago by Arup Ghosh2.1k
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Answer: C: BAM file output
... Read the SAM/BAM specification [document][1]. [1]: https://samtools.github.io/hts-specs/SAMv1.pdf ...
written 1 hour ago by Arup Ghosh2.1k
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Answer: C: MultiQC not generating ouput ?
... Multiqc does not run `FastQC` first you have to run the tool to generate quality reports for all the fastq files. Then combine the reports using Multiqc. ...
written 2 hours ago by Arup Ghosh2.1k
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Comment: C: Suggestion for circlize package in R for plotting the datasets
... It's hard to provide a better solution without knowing the number(large data is a very ambiguous term) of data sets you are trying accommodate in a plot and how the Circos plot outcome looks with your current configuration. ...
written 18 hours ago by Arup Ghosh2.1k
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Comment: C: demo data of minnow
... Hello yueli7! It appears that your post has been cross-posted to another site: Github. https://github.com/COMBINE-lab/minnow/issues/6 This is typically not recommended as it runs the risk of annoying people in both communities. ...
written 1 day ago by Arup Ghosh2.1k
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Answer: C: Suggestion for circlize package in R for plotting the datasets
... Check this tutorial by the developer of the `circlize ` package. https://jokergoo.github.io/blog/html/segmentation_WGBS_dmr.html ...
written 1 day ago by Arup Ghosh2.1k
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Comment: C: Filezilla to dowload fastqc
... Connect to the target server > navigate to the file location > download. ...
written 9 days ago by Arup Ghosh2.1k
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Comment: C: Run gromacs source
... Make sure the executable Windows binary is present in the location you have mentioned. ...
written 10 days ago by Arup Ghosh2.1k
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Comment: C: Error in createMAE function: non-unique values when setting 'row.names' in TCGA
... Check this thread about duplicate rownames in R: https://www.biostars.org/p/62988/ ...
written 10 days ago by Arup Ghosh2.1k

Latest awards to Arup Ghosh

Popular Question 12 days ago, created a question with more than 1,000 views. For Seurat vs Monocle
Teacher 16 days ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Errors with SRA-toolkit: not enough space on the disk. (112)
Scholar 3 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Errors with SRA-toolkit: not enough space on the disk. (112)
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 5 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Scholar 5 months ago, created an answer that has been accepted. For A: scatter plot in ggplot2 two colour for two different condition
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly ident
Scholar 5 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Scholar 7 months ago, created an answer that has been accepted. For A: How can I uninstall my packages in Rstudio
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition
Guru 10 months ago, received more than 100 upvotes.
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Visualising BedGraph files on UCSC [custom tracks]
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: scatter plot in ggplot2 two colour for two different condition

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