Moderator: Arup Ghosh
Arup Ghosh ♦ 2.7k
- Reputation:
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- India
- Website:
- https://arup.dev/
- Twitter:
- arupgsh
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- Last seen:
- 4 hours ago
- Joined:
- 4 years, 9 months ago
- Email:
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PhD student @ Institute of Life Science, Bhubaneswar
Posts by Arup Ghosh
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... The same has been answered in this SO thread: https://stackoverflow.com/questions/63925267/how-to-change-font-size-in-scanpy ...
written 23 hours ago by
Arup Ghosh ♦ 2.7k
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51
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... Have you checked the `vdb-config` (`vdb-config -i `) file? ...
written 3 days ago by
Arup Ghosh ♦ 2.7k
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1
answer
203
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1
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... Why you are not using featureCounts? ...
written 5 weeks ago by
Arup Ghosh ♦ 2.7k
4
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1
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Answer:
C: ERROR while adding gene names
... Use `keytype = "ENSEMBLTRANS"`. ...
written 5 weeks ago by
Arup Ghosh ♦ 2.7k
0
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1
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Comment:
C: peoblem with trimmomatic
... Make sure the adapter sequence file is properly formatted and present in the location you have mentioned. ...
written 6 weeks ago by
Arup Ghosh ♦ 2.7k
1
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140
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Comment:
C: Circos plot with heatmap
... Check the methylation example in [circlize][1].
[1]: https://jokergoo.github.io/circlize_book/book/circos-heatmap.html ...
written 7 weeks ago by
Arup Ghosh ♦ 2.7k
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... Click on `Send to` option on the top right corner of the page.
![enter image description here][1]
[1]: https://i.imgur.com/fEdZr4Y.png ...
written 8 weeks ago by
Arup Ghosh ♦ 2.7k
1
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1
answer
229
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1
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... Use docker or conda environments to avoid dependency conflicts and version issues. ...
written 9 weeks ago by
Arup Ghosh ♦ 2.7k
0
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1
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Answer:
A: Download multiple fastq files
... Save the links in a text file and use GNU parallel with wget to download the files simultaneously.
parallel --verbose "wegt {}" ::: $(cat download.txt)
If you want to use multiple connections for download use [aria2][1].
parallel --verbose "aria2c -x {}" ::: $(cat download.txt)
[1]: h ...
written 9 weeks ago by
Arup Ghosh ♦ 2.7k
1
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184
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... Before comparing the lists convert the array ids to the ensemble gene ids. Check the attached thread to know how to convert microarray ids. https://www.biostars.org/p/76097/ ...
written 9 weeks ago by
Arup Ghosh ♦ 2.7k
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For A: Visualising BedGraph files on UCSC [custom tracks]
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For A: How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly ident
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For A: Visualising BedGraph files on UCSC [custom tracks]
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For A: Visualising BedGraph files on UCSC [custom tracks]
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For A: Visualising BedGraph files on UCSC [custom tracks]
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For C: Errors with SRA-toolkit: not enough space on the disk. (112)
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For A: How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly ident
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For A: Visualising BedGraph files on UCSC [custom tracks]
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For A: Visualising BedGraph files on UCSC [custom tracks]
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For A: scatter plot in ggplot2 two colour for two different condition
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