User: Thanujay S

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Thanujay S0
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Posts by Thanujay S

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Comment: C: How to run RATT (Rapid Annotation Tool)
... Hey! Did you try parsing to the path of the perl script? Take a look at the following : https://github.com/ThomasDOtto/ratt http://ratt.sourceforge.net/documentation.html ...
written 5 months ago by Thanujay S0
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Comment: C: Comparing two columns of one file with two columns of another file, print all th
... Yeah! It's never longer! ...
written 11 months ago by Thanujay S0
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Comment: C: Comparing two columns of one file with two columns of another file, print all th
... Thank you for the try! @massa.kassa.sc3na I'm getting an error in this particular line. for x in short_keys: if x in longkey: return x The error message : TypeError: argument of type 'float' is not iterable ...
written 11 months ago by Thanujay S0
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Comment: C: Comparing two columns of one file with two columns of another file, print all th
... Hey! That's the thing, sometimes it's like a substring and sometimes it's an exact match. Both the files are formatted different on that particular column. ...
written 11 months ago by Thanujay S0
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Comment: C: Comparing two columns of one file with two columns of another file, print all th
... Okay! According to the example ive put forward, I meant that oculocerebrorenal syndrome is a keyword and even if LOWE OCULOCEREBRORENAL SYNDROME is present, it should act as a match. And the suggestions you give must be case insensitive, as om.tsv has all uppercase in the name column and final.tsv ...
written 11 months ago by Thanujay S0
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Comment: C: Comparing two columns of one file with two columns of another file, print all th
... Hey! Yeah exactly. It should act like a key and only match where both the name and the HP ID matches. In om.tsv the combination of these columns are scattered, I wanted to find the combination and print it along with the final.tsv. So the two columns of final.tsv will act as a key and would search ...
written 11 months ago by Thanujay S0
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Comparing two columns of one file with two columns of another file, print all the matching in one file and mismatching in another file. Python or Bash ?
... Hello all! SO guys have two files, both of them are tab-separated text files, trying to merge both the files based on two columns. The two files are unsorted and doesn't contain a header. Another thing is that Final.tsv is large containing about 2 million rows. ...
python matching join awk written 11 months ago by Thanujay S0 • updated 11 months ago by massa.kassa.sc3na270
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Comment: C: Comparing two cnv call files?
... Thank you, Wouter for the prompt reply! :) Ill work on it and get back to you! ...
written 13 months ago by Thanujay S0
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Comparing two cnv call files?
... Hello all! I have two CNV call files produced by CNVKit and would like to find the concordance between the two CNV call files. I know there are alot of SNP concordance tools out there. Are there any tools or a way to get the concordance of two cnv call files. Thank you in advance. Regards, Thanuj ...
ngs cnv concordance written 13 months ago by Thanujay S0 • updated 13 months ago by WouterDeCoster44k

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