User: lieven.sterck

gravatar for lieven.sterck
lieven.sterck2.3k
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Location:
Belgium, Ghent, VIB
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9 hours ago
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2 years, 6 months ago
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Posts by lieven.sterck

<prev • 512 results • page 1 of 52 • next >
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Answer: C: Trimmomatic execution removes the data from my fastq sequence file. What am I do
... at first sight you did not provide an output file to write the log info the option `-trimlog` takes a file name as argument (now it will indeed overwrite one of your input files) you also need to provide the output as ` ` And I understand you want to speed up the analysis running it multi-core b ...
written 11 hours ago by lieven.sterck2.3k
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Comment: C: Why the outcome of my EMBL conversion file is all 'gap'???
... and the EMBLmyGFF3 cmdline ? this gff file does already not correspond to the EMBL you have given previously. ...
written 16 hours ago by lieven.sterck2.3k
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Comment: C: Why the outcome of my EMBL conversion file is all 'gap'???
... strange, that makes very little sense ... Can you post an extract of your GFF file so we can inspect? ...
written 17 hours ago by lieven.sterck2.3k
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Comment: C: EMBOSS transeq translate to protein with 3 letter code
... Any particular reason why you want to do that? It will only be very confusing ... ...
written 17 hours ago by lieven.sterck2.3k
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Comment: C: Why the outcome of my EMBL conversion file is all 'gap'???
... If I remember the original post, it thought it was to upload data to EBI/ENA ...
written 20 hours ago by lieven.sterck2.3k
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Comment: C: Why the outcome of my EMBL conversion file is all 'gap'???
... I don't see what's wrong with it .... Those gaps indicate gaps in your genomic sequence, and there likely be plenty of those indeed. Scroll further downwards until you passed all these gaps tags and see what's printed there ...
written 20 hours ago by lieven.sterck2.3k
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Comment: C: Standalone BLAST error: UnexpectedTagClassByte
... small note: we're at version 2.7.1 currently. I would thus seriously recommend to update to the latest version! ...
written 20 hours ago by lieven.sterck2.3k
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Comment: C: how to change fasta headers?
... don't think it's you. The ones in your original post are OK, but the ones you posted here above are missing all the spaces. if you retrieve them this way from NCBI I would let them know that something is off ...
written 22 hours ago by lieven.sterck2.3k
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Comment: C: how to choose the blastp output results?
... what kind of blast did you ran? it does not look like a blastp output. Depends what you want to achieve or what the specific reason is for selecting a single hit. ...
written 23 hours ago by lieven.sterck2.3k
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Comment: C: how to change fasta headers?
... I wonder how you get to (or where you got them from) those kind of fasta headers? they're really violating all possible rules for fasta header formatting ... ...
written 23 hours ago by lieven.sterck2.3k

Latest awards to lieven.sterck

Appreciated 7 days ago, created a post with more than 5 votes. For A: Delete numbers in the tables column
Good Answer 7 days ago, created an answer that was upvoted at least 5 times. For A: Delete numbers in the tables column
Teacher 8 days ago, created an answer with at least 3 up-votes. For C: Rename FASTA files according to FASTA file header
Scholar 8 days ago, created an answer that has been accepted. For A: List of all GO terms
Scholar 5 weeks ago, created an answer that has been accepted. For A: List of all GO terms
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Assembly with mate-pairs issue
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For C: Rename FASTA files according to FASTA file header
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: Gene Prediction Softwares
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: Gene Prediction Softwares
Scholar 11 weeks ago, created an answer that has been accepted. For A: List of all GO terms
Scholar 11 weeks ago, created an answer that has been accepted. For A: List of all GO terms
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Scholar 3 months ago, created an answer that has been accepted. For A: List of all GO terms
Teacher 3 months ago, created an answer with at least 3 up-votes. For C: Rename FASTA files according to FASTA file header
Scholar 3 months ago, created an answer that has been accepted. For A: List of all GO terms
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Gene Prediction Softwares
Scholar 3 months ago, created an answer that has been accepted. For A: List of all GO terms
Teacher 3 months ago, created an answer with at least 3 up-votes. For C: Rename FASTA files according to FASTA file header
Scholar 4 months ago, created an answer that has been accepted. For A: List of all GO terms
Scholar 4 months ago, created an answer that has been accepted. For A: List of all GO terms
Teacher 4 months ago, created an answer with at least 3 up-votes. For C: Rename FASTA files according to FASTA file header
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Gene Prediction Softwares
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