User: blur
blur • 110
- Reputation:
- 110
- Status:
- Trusted
- Location:
- European Union
- Last seen:
- 6 days, 11 hours ago
- Joined:
- 4 years, 6 months ago
- Email:
- b***@pazcorp.com
Posts by blur
<prev
• 120 results •
page 1 of 12 •
next >
0
votes
1
answer
53
views
1
answers
... thanks! that's great :) ...
written 7 days ago by
blur • 110
1
vote
1
answer
53
views
1
answer
... Hi,
I am looking for a database of small RNAs (snoRNAs, snRNAs, mirs) in plant genomes. Does anyone know of such a DB? I know there are such DBs for human small RNAs.
I know mirbase and mirtarbase, but looking for other small RNAs (preferably bed files of genomic locations if anyone knows where to ...
written 7 days ago by
blur • 110
0
votes
0
answers
330
views
0
answers
... Thanks, I'll try it all
(the library is after experimental rRNA depletion, but I guess it never hurts to check again) ...
written 4 months ago by
blur • 110
4
votes
0
answers
330
views
0
answers
... Hi,
I want to know whether I have DNA contamination in my RNA-seq data.
I have a library with DNAse and one without DNAse and another pair with additional treatment
[DNAse(+) vs. DNAse(-), DNAse(+)+X vs. DNAse(-)+X]
I tried:
1) Checking overall alignment rate of DNAse(+) vs. DNAse(-) and DNAse(+ ...
written 4 months ago by
blur • 110
0
votes
0
answers
323
views
0
answers
... I do think there was a sequencing problem...
I will try and clean it using the tools suggested
Thanks ...
written 4 months ago by
blur • 110
0
votes
0
answers
323
views
0
answers
... There is phiX, but it can't be the reason as all the runs have phiX...
Also, the quality is clearly affected as the errors bars of the reads are very, very long ...
written 4 months ago by
blur • 110
1
vote
0
answers
323
views
0
answers
... Hi,
I have been looking at a library run in Hiseq using fastQC.
Usually I get good Per tile sequence quality, with the entire area looking bluish (OK quality throughout).
But this time I get tiles that appear to give consistently low quality reads over the entire read sequence.
The thing is - I tho ...
written 4 months ago by
blur • 110
0
votes
1
answer
295
views
1
answers
... thanks! I'll try this ...
written 7 months ago by
blur • 110
0
votes
1
answer
295
views
1
answers
... regretfully, it is an actual example from my SAM file.
Any pointers as how to change my BWA mem options to get rid of these?
Thanks, ...
written 7 months ago by
blur • 110
0
votes
2
answers
561
views
2
answers
... Have you tried using a mir reference? i.e. a reference only containing the mirs sequences?
You can use MiRbase download to get this data:
http://www.mirbase.org/ftp.shtml ...
written 7 months ago by
blur • 110
Latest awards to blur
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Popular Question
4 months ago,
created a question with more than 1,000 views.
For uneven paired end reads in bowtie
Popular Question
4 months ago,
created a question with more than 1,000 views.
For cutadapt --cut option for paired-end reads?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For MACS2 and duplicates
Popular Question
4 months ago,
created a question with more than 1,000 views.
For FASTX error - quality score
Epic Question
9 months ago,
created a question with more than 10,000 views.
For SNP call using bcftools
Popular Question
11 months ago,
created a question with more than 1,000 views.
For trim galore putfiles
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Popular Question
11 months ago,
created a question with more than 1,000 views.
For R1 and R2 in sequencing data
Supporter
11 months ago,
voted at least 25 times.
Centurion
13 months ago,
created 100 posts.
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Popular Question
15 months ago,
created a question with more than 1,000 views.
For How do I find unmapped reads in my sam file?
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Great Question
17 months ago,
created a question with more than 5,000 views.
For Generate consensus from BAM file
Popular Question
17 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Popular Question
21 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Great Question
2.5 years ago,
created a question with more than 5,000 views.
For SNP call using bcftools
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1724 users visited in the last hour