User: blur
blur • 140
- Reputation:
- 140
- Status:
- Trusted
- Location:
- European Union
- Last seen:
- 2 days, 5 hours ago
- Joined:
- 5 years, 9 months ago
- Email:
- b***@pazcorp.com
Posts by blur
<prev
• 150 results •
page 1 of 15 •
next >
1
vote
1
answer
39
views
1
answer
... Hi,
I have a genomic alignment for IP vs. input files. I want to count the coverage of an entire feature to do FPKM of the IP vs. input to see if there was an enrichment after IP.
The features I want to check are NOT genes, but areas in the genome like promotors, enhancers and so on, There is no GT ...
0
votes
0
answers
89
views
0
answers
... Hi,
I have a list of genes and I'd like to check which histones they correlate to.
As far as I know it is expected to be negatively correlated with one modified histone and therefore I'd expect it to be similarly positively correlated with a few others.
The thing is - I don't know what sort of lis ...
written 6 weeks ago by
blur • 140
0
votes
1
answer
113
views
1
answers
Comment:
C: GFF3 transcript name
... Thanks! This is the link I needed :) ...
written 7 weeks ago by
blur • 140
0
votes
1
answer
113
views
1
answers
Comment:
C: GFF3 transcript name
... Human built 38
The purpose is literally to find the transcript names in the gff3 format :)
...
written 7 weeks ago by
blur • 140
1
vote
1
answer
113
views
1
answer
... Hi,
Where can I download GFF3 format transcript names? or the full gff3 files
I tried: ftp://ftp.ensembl.org website (it doesn't seem to work at all at the moment)
Is there an alternative?
Thanks ...
written 7 weeks ago by
blur • 140
0
votes
2
answers
208
views
2
answers
... looks great, thanks! ...
written 8 weeks ago by
blur • 140
1
vote
2
answers
208
views
2
answers
... Hi,
I uploaded peaks into the UCSC genome browser and I can see all of the peaks on the full chromosome.
Now I'd like to draw the entire genome, with each chromosome showing the peaks throughout to get a good visual idea of the peaks distribution on the chromosomes.
I am looking fir a tool that doe ...
0
votes
1
answer
112
views
1
answers
... I found a way - I used the fastx program
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html#fastx_collapser_usage ...
written 10 weeks ago by
blur • 140
0
votes
1
answer
112
views
1
answers
... This seems close to what I need - but I also need to be able to count the no. of duplicates per type and I can't seem to find this option in the manual...
The endpoint is to count the number of each as per the total reads available. ...
written 10 weeks ago by
blur • 140
0
votes
1
answer
112
views
1
answer
... Hi,
I want to create an MSA and then collapse the identical reads, so that I can see the different TYPES of reads in my MSA. Any ideas what program allows such options?
Thanks,
...
written 10 weeks ago by
blur • 140
• updated
10 weeks ago by
Mensur Dlakic • 6.9k
Latest awards to blur
Popular Question
6 weeks ago,
created a question with more than 1,000 views.
For UCSC peak calling - weird results
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For UCSC peak calling - weird results
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For where can I find more data about --outSAMattributes All?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For UCSC peak calling - weird results
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Bcftools magic string
Popular Question
4 months ago,
created a question with more than 1,000 views.
For UCSC peak calling - weird results
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Bcftools magic string
Popular Question
5 months ago,
created a question with more than 1,000 views.
For cutadapt --cut option for paired-end reads?
Great Question
7 months ago,
created a question with more than 5,000 views.
For Generate consensus from BAM file
Popular Question
7 months ago,
created a question with more than 1,000 views.
For cutadapt --cut option for paired-end reads?
Popular Question
7 months ago,
created a question with more than 1,000 views.
For Bcftools magic string
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Popular Question
8 months ago,
created a question with more than 1,000 views.
For bcftools soft filters (-s)
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Popular Question
15 months ago,
created a question with more than 1,000 views.
For MACS2 and duplicates
Popular Question
15 months ago,
created a question with more than 1,000 views.
For bcftools soft filters (-s)
Popular Question
15 months ago,
created a question with more than 1,000 views.
For fastq_quality_trimmer: Premature End-Of-File
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Generate consensus from BAM file
Popular Question
20 months ago,
created a question with more than 1,000 views.
For uneven paired end reads in bowtie
Popular Question
20 months ago,
created a question with more than 1,000 views.
For cutadapt --cut option for paired-end reads?
Popular Question
20 months ago,
created a question with more than 1,000 views.
For MACS2 and duplicates
Popular Question
20 months ago,
created a question with more than 1,000 views.
For FASTX error - quality score
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1014 users visited in the last hour