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121,805 results • Page
3 of 2437
Sort: Rank
Rank
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Votes
Replies
0
votes
2
replies
2.7k
views
Clumping- cannot mtfrm
clumping
MR
updated 18 days ago by
Onyeubani
▴ 90 • written 7 months ago by
sp
• 0
0
votes
0
replies
1.2k
views
Covariate-adjusted SPIEC-EASI
microbiome
network
spieceasi
18 days ago by
b
• 0
0
votes
2
replies
1.2k
views
What is the best practice for scRNAseq analysis of multiple samples?
scRNAseq
seurat
single
cell
18 days ago by
Tundup
▴ 10
0
votes
0
replies
1.1k
views
Forum:
Trying to get into Drug Design & Molecular Docking
Docking
Biochemistry
Ligands
updated 18 days ago by
Ram
45k • written 19 days ago by
Shreyas
• 0
0
votes
3
replies
1.3k
views
DESeq2 - Changing the order of counts / metadata
counts
metadata
DESeq2
14 days ago by
himanshu0102
• 0
9
votes
7
replies
3.1k
views
Marker genes of hematopoietic stem cells for cluster annotation in single-cell analysis
single-cell
cluster-annotation
hsc
marker-gene
updated 19 days ago by
ATpoint
89k • written 2.9 years ago by
Ribo
▴ 80
0
votes
1
reply
1.0k
views
Problem with Dfam-Database and the RepeatClassifier function of repeat modeler
dfam
repeat-annotation
TE-database
repeat-masking
repeatmodeller
updated 19 days ago by
GenoMax
153k • written 19 days ago by
WaspInSpace
• 0
1
vote
1
reply
455
views
Construction of a pangenome using multiple genome sequences and read data
vg
updated 20 days ago by
colindaven
7.8k • written 20 days ago by
shcho
• 0
0
votes
0
replies
400
views
How to decide the normalization method for targeted metabolomics data ?
LC-MS
normalization
R
metabolomics
targeted-metabolomics
20 days ago by
Luwell
• 0
0
votes
1
reply
414
views
Leafcutter installation issue
Leafcutter
Conda
Devtools
updated 20 days ago by
michael.ante
★ 4.0k • written 20 days ago by
jyotik
• 0
1
vote
0
replies
399
views
How to interpret and filter vg call output VCF
graph
genotyping
pangenome
vg
VCF
20 days ago by
Tobias
▴ 40
1
vote
1
reply
540
views
Transcriptome splicing analysis tools
RNA-sequencing
splicing
updated 20 days ago by
Ram
45k • written 23 days ago by
Morris_Chair
▴ 370
0
votes
2
replies
570
views
running featureCounts on multiple bam files
RNAseq
R
updated 20 days ago by
Ram
45k • written 21 days ago by
Mamta
• 0
1
vote
3
replies
651
views
Creating sliding window for methylation data
WGBS
methylation
updated 21 days ago by
Alex Reynolds
36k • written 23 days ago by
ty.fu
• 0
0
votes
0
replies
429
views
Running time of determining graph multiplicity in unicycler
hydrid
genome
unicycler
assembly
22 days ago by
德水
• 0
0
votes
1
reply
527
views
How to get REF/ALT allele for a list of rsid and SNP notations
BED
R
Variant
VCF
SNP
updated 20 days ago by
GenoMax
153k • written 22 days ago by
Meisam
▴ 250
1
vote
7
replies
870
views
My PCA plot is weird: PC1 with 98.684% variance and PC2 with 0.582% variance
r
pca
rna-seq
visualization
updated 20 days ago by
ATpoint
89k • written 22 days ago by
undergrad_student
▴ 10
4
votes
2
replies
488
views
CTCF binding sites
genome
GENCODE
annotations
23 days ago by
pt.taklifi
▴ 70
0
votes
0
replies
412
views
News:
Workshop: Virtual RNA-seq (de novo), August 19–21
workshop
RNASeq
UConn
23 days ago by
zsc25001
▴ 10
1
vote
4
replies
591
views
Only 35 out of 800 genes in STAR reference assembly
RNAseq
transcriptomics
RNA_seq
STAR
RNA_sequencing
21 days ago by
Jasper
• 0
0
votes
0
replies
438
views
Purpose and necessity of removing PCR duplicates in m6A-seq analysis
PCR
MeRIP-seq
m6A-seq
duplicates
23 days ago by
remagen
▴ 10
0
votes
8
replies
773
views
Efficiently Converting CD-HIT-EST Clusters into .fasta Files
python
MSA
clustering
cd-hit
updated 21 days ago by
Joe
22k • written 23 days ago by
mtsrn
• 0
0
votes
0
replies
392
views
Concatenation of adata and losing .var
single
seq
cell
RNA
scanpy
23 days ago by
bioinfo
▴ 160
0
votes
0
replies
376
views
Integrating and annotating multiple samples of single cell ATAC data
signac
seurat
scATAC
20 days ago by
AB
▴ 390
2
votes
2
replies
525
views
combine hifiasm and hifiasm-ont assemblies.
wgs
ngs
genomics
sequencing
updated 23 days ago by
shelkmike
★ 1.7k • written 24 days ago by
Mark
▴ 60
0
votes
4
replies
1.1k
views
Domains of protein
Domains
Protein
fasta
written 19 months ago by
brunofelicianodeomena
• 0
0
votes
1
reply
559
views
CYTOHUBA QUESTION (cluepedia)
cytoscape
cluepedia
NETWORK
updated 24 days ago by
churas.camera
▴ 20 • written 4 weeks ago by
hwangseok1025
• 0
3
votes
3
replies
552
views
snpEff custom database not found
docker
snpeff
updated 24 days ago by
Arup Ghosh
3.4k • written 24 days ago by
sg197
▴ 40
5
votes
3
replies
508
views
How to determine phix read in undermined fastq files
demultiplexing
updated 24 days ago by
GenoMax
153k • written 24 days ago by
1769mkc
★ 1.3k
0
votes
2
replies
573
views
Job:
Job search for Data Engineer role
engineer
data
updated 18 days ago by
Matthias Zepper
5.1k • written 24 days ago by
itparanoia
• 0
0
votes
6
replies
778
views
nanopore long sequencing DNA data data basecalling using EPI2ME ,NEXTFLOW and singualrity in cluster env have error : ERROR ~ Error executing process…
basecalling
18 days ago by
reziyamaimaiti0331
• 0
6
votes
4
replies
580
views
Nextflow STAR alignment process only aligning one fastq file when 6 are being passed in
Nextflow
RNA-seq
24 days ago by
smarcotte11
▴ 10
0
votes
0
replies
361
views
News:
online course: Single-cell RNA-seq Analysis with R/Bioconductor
Bioconductor
single-cell-RNAseq
24 days ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
374
views
How to Generate PacBio HiFi Reads with Ground Truth Using PBSIM3?
pacbio
pbsim
pbsim3
24 days ago by
DBPZ
• 0
0
votes
0
replies
364
views
News:
Online course: Bioinformatic Analysis of Transposable Elements
Transcriptomics
TransposableElements
ManualCuration
GenomeAssembly
25 days ago by
Physalia-courses
★ 2.6k
4
votes
4
replies
559
views
"No space left on device" error when making DIAMOND database, alternative download method?
database
diamond
updated 24 days ago by
Mensur Dlakic
★ 29k • written 25 days ago by
pahurkar.arjun
• 0
0
votes
3
replies
593
views
Uninformative Cluster in scRNAseq
scRNAseq
QC
Doublets
updated 17 days ago by
Arup Ghosh
3.4k • written 25 days ago by
karlensberg
• 0
1
vote
2
replies
436
views
How to retrieve metadata for multiple genbank records
metadata
Genbank
25 days ago by
SushiRoll
▴ 140
7
votes
5
replies
928
views
Best practice to merge per sample variant calls from personalized pangenomes
graph
vcf
haplotype-sampling
vg
personalized-pangenome
updated 25 days ago by
GenoMax
153k • written 4 weeks ago by
Tobias
▴ 40
0
votes
2
replies
505
views
Why does the number of sequences increase after using Hi-C to mount chromosomes?
YAHS
hifiasm
assembly
Hi-C
Gene
updated 25 days ago by
shelkmike
★ 1.7k • written 27 days ago by
xinguok794
• 0
1
vote
3
replies
514
views
Difficulties with assembly
MEGAHIT
Eukaryote
Assembly
updated 25 days ago by
shelkmike
★ 1.7k • written 25 days ago by
Mokammel Hossain
• 0
1
vote
2
replies
472
views
Seurat DimPlot generates a weird data frame together with the scatter plot
R
Seurat
24 days ago by
solo.albif
• 0
5
votes
5
replies
5.2k
views
How to download intronic positions from Ensembl
genome
ensembl
updated 25 days ago by
peterdion
• 0 • written 9.6 years ago by
Ati
▴ 50
0
votes
11
replies
759
views
Current size of blast nr database as FASTA file
fasta
blast
updated 25 days ago by
lieven.sterck
15k • written 26 days ago by
pahurkar.arjun
• 0
1
vote
5
replies
629
views
SRA FTP Upload Issue
FTP
SRA
NCBI
updated 25 days ago by
Jesse
▴ 880 • written 26 days ago by
saamhasan55
▴ 10
4
votes
4
replies
526
views
How to calculate total and average read counts from paired-end and singleton FASTQ files?
Metagenomics
updated 20 days ago by
GenoMax
153k • written 26 days ago by
Sachin
▴ 20
2
votes
1
reply
387
views
New computer purchase
Linux
updated 26 days ago by
GenoMax
153k • written 26 days ago by
Edward
• 0
0
votes
0
replies
452
views
News:
Python for Biological Data Exploration & Visualization (PYBD01)
Python
updated 26 days ago by
GenoMax
153k • written 26 days ago by
oliverhooker
▴ 110
0
votes
0
replies
367
views
News:
Introduction to Machine Learning (IMLR04)
Learning
R
Machine
updated 26 days ago by
GenoMax
153k • written 26 days ago by
oliverhooker
▴ 110
0
votes
2
replies
509
views
When absolute protein quantification isn't possible, what anaylses work on ranked expression?
DIA-MS
proteomics
updated 20 days ago by
Ram
45k • written 26 days ago by
Ali
• 0
121,805 results • Page
3 of 2437
Recent Votes
Universal Human Reference RNA Sample
Universal Human Reference RNA Sample
Are these 10x samples too low quality for downstream analysis?
Are these 10x samples too low quality for downstream analysis?
C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
Answer: Question about substitution of KEGG
Answer: Universal Human Reference RNA Sample
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Recent Replies
Comment: How to use NextFlow to compute identity score between bacterial genomes?
by
Mensur Dlakic
★ 29k
It sounds to me like you want to make scrambled eggs, but you are stuck because the mixer needs fixing. No worries, you can scramble the eg…
Comment: How to use NextFlow to compute identity score between bacterial genomes?
by
Pierre Lindenbaum
166k
> To note that if I add the option -profile docker I still get an error. is it the same error , do you have docker installed ? do you hav…
Comment: chimeraTE GTF format error
by
frarodmar17
• 0
The analysis did not work with the included GTF file. I also ran AGAT but I did not get conclusions as the output only showed me the number…
Comment: Help with metagenomics viral
by
cfos4698
★ 1.1k
It's possible/likely that your sequencing simply didn't recover any virus reads, despite RT-PCR detection. Often there is too much 'other s…
Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
Jordan M Eizenga
▴ 740
I would say the answer is unfortunately no. It would be possible to make smaller individual XG indexes, but downstream subcommands in the V…
Comment: Question about substitution of KEGG
by
dxh0222
▴ 10
Thanks for your recommendation! I think kofam_scan is suitable for me.
Comment: How to use CAFE from Orthofinder Results
by
san96
▴ 190
Hi, are you referring to Orthogroups.GeneCount.tsv? Thank you.
Comment: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴ 80
For example you can see it here, this is the first one in the table (SRR1215996): https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=ru…
Answer: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴ 80
I believe here: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP025982 They are from the SEQC https://www-nature-com.proxy3.library.…
Answer: Question about substitution of KEGG
by
Mensur Dlakic
★ 29k
There is a tool that uses KEGG hidden Markov models and HMMer to scan individual proteins. It is not automated and may require some fiddlin…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
1769mkc
★ 1.3k
DRAGEN are you using dragen 4.4 release for your workflow?
Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
by
Jeremy Leipzig
23k
Your strategy sounds ok but we would need to see your modified file and the exact command you ran to know what happened.
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
Arindam
▴ 10
I think for mapping to the reference genome
Comment: Local Synteny Analysis with Uncharacterized Genes
by
Joe
22k
+1 for `clinker`, came here to make the same suggestion
Comment: Help with metagenomics viral
by
CECEL
• 0
Hi, thanks for answer! I'm using Kraken2, but the classified reads, when put on BLAST, didn't returned nothing, even in Viruses_db...
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