User: jrj.healey

gravatar for jrj.healey
jrj.healey290
Reputation:
290
Status:
Trusted
Location:
United Kingdom
Website:
http://www2.warwick.ac...
Twitter:
JRJHealey
Last seen:
4 hours ago
Joined:
1 year, 4 months ago
Email:
j*********@gmail.com

PhD Student at the Molecular Organisation and Assembly in Cells Doctoral Training Centre, University of Warwick.

PhD is lab based primarily, utilising synthetic biology for drug delivery applications, but something of an amateur enthusiast when it comes to bioinformatics/programming. Trying to absorb as much as I can.

Decent amount of experience with molecular simulation, genomics (including assembly, QC, annotation, comparative genomics), transcriptomics, proteomics, phylogenetics etc.

Posts by jrj.healey

<prev • 89 results • page 1 of 9 • next >
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Comment: C: NovaSeq from Illumina
... The guys at uni are questioning the assembly qualities coming out of the 2 colour chem vs the same library on a miseq with 4 colour still. There are supposed to be known biases in Base proportions. Anyone know more on this? ...
written 5 hours ago by jrj.healey290
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Comment: C: How to count occurrence of numbers in text files using phython
... Exactly as mentioned above. Using `sys.argv[]` is just a quick and dirty way of taking arguments directly from the command line. I *hate* hardcoding file names etc in scripts. It means you can do away with the `input_file01` line. Thus if you invoked the following at the commandline: `python scrip ...
written 14 hours ago by jrj.healey290
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Comment: C: How to count occurrence of numbers in text files using phython
... I know :P they just aren't verbose enough for me so I can't think like that haha! ...
written 1 day ago by jrj.healey290
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Comment: C: How to count occurrence of numbers in text files using phython
... This is my partial solution. It handles your given file but doesn't attempt to handle mutliple files strung together. I must be having a bad day because I can't make it work. If it was me, I'd save myself a considerably amount of headache and split the files apart first, then just loop over them wit ...
written 1 day ago by jrj.healey290
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Comment: C: How to count occurrence of numbers in text files using phython
... Do you have all the files separately or do they have to be all in one? Frankly the # lines are completely stumping me. Splitting the file up by entry is difficult (for me anyway) and then having to do all the column parsing (which is easy). ...
written 1 day ago by jrj.healey290
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Comment: C: How to count occurrence of numbers in text files using phython
... Can you tell us more about your input file? Is it tab separated? ...
written 1 day ago by jrj.healey290
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Comment: C: BRIG image generator
... I wondered who would be the first to write that ;) ...
written 2 days ago by jrj.healey290
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Answer: A: Python language preference
... GFF is still a bit of a funny format, in that it's used increasingly as program inputs, but the parsers don't seem to be quite there yet. Case in point; biopython doesn't fully integrated it just yet. However, they're working towards it. Maybe this link will set you off on the right track, but as ...
written 3 days ago by jrj.healey290
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Comment: C: BRIG image generator
... A conflict with later versions of java mean that BRIG currently breaks with multi fasta files. You'll have to use separate files. Source: guy who wrote it is a mate ...
written 3 days ago by jrj.healey290
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Comment: C: How to construct multiple sequence alignment from group of pairwise alignments
... This was my thought too hence my confusion. Global alignment should handle it I would think? ...
written 5 days ago by jrj.healey290

Latest awards to jrj.healey

Supporter 2 days ago, voted at least 25 times.
Scholar 6 days ago, created an answer that has been accepted. For A: Script/Application to create a genbank format sub-sequence
Teacher 6 days ago, created an answer with at least 3 up-votes. For A: How do can I use Biopython and SeqIO to parse out multiple genes from several NC
Scholar 15 days ago, created an answer that has been accepted. For A: Script/Application to create a genbank format sub-sequence
Teacher 15 days ago, created an answer with at least 3 up-votes. For A: How do can I use Biopython and SeqIO to parse out multiple genes from several NC
Autobiographer 18 days ago, has more than 80 characters in the information field of the user's profile.
Scholar 19 days ago, created an answer that has been accepted. For A: Script/Application to create a genbank format sub-sequence

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