User: brett.vanderwerff
brett.vanderwerff • 40
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Posts by brett.vanderwerff
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... You might be able to so some stuff with GEO2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/) depending on the dataset. if its microarray data, you could just download the data and go though the analysis from scratch. A lot of it will be R based (if not all of it), there are tons of tutorials out there. I ...
written 9 days ago by
brett.vanderwerff • 40
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... You could crack open those perl files and see what is might be tripping the error at those lines (if you have not already). I see there is an ubuntu specific distribution, you could try that. Linux mint looks nice but Ubuntu is so popular that googling errors is usually much easier. ...
written 9 days ago by
brett.vanderwerff • 40
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... Kallisto is really similar to salmon for "pseudo alignment", I ran it with about 8GB of RAM on human samples. I think the most demanding thing was building the RNA index, which you can get "pre-built" if you look around and probably could be run with a lot less. STAR is also really popular, but on t ...
written 9 days ago by
brett.vanderwerff • 40
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For A: Hardware requirement for RNA-seq
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