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0
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0
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176
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Comment: Comment: Can't figure out plink --sample-diff
9 days ago by curious ▴ 750
0
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2
replies
176
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Can't figure out plink --sample-diff
plink
9 days ago by curious ▴ 750
0
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0
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367
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Comment: Comment: Why do these two variants appear to result in the same amino acid change when an
11 weeks ago by curious ▴ 750
3
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2
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367
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Why do these two variants appear to result in the same amino acid change when annotated by snpeff, but are annotated differently in clinvar
clinvar
11 weeks ago by curious ▴ 750
1
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1
reply
278
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Is there a way to map Medgen # to OMIM # programmatically?
medgen omim
updated 3 months ago by 161k • written 3 months ago by ▴ 750
0
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1
reply
381
views
Where do these snpeff annotation come from?
snpeff
updated 4 months ago by 100k • written 4 months ago by ▴ 750
0
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4
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1.1k
views
Is there a way to get a list of all homogygous sites for each sample with plink (regardless if they are in a run)
plink
updated 6 months ago by 10k • written 7 months ago by ▴ 750
0
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1
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1.1k
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Comment: Comment: Is there a way to get a list of all homogygous sites for each sample with plink
7 months ago by curious ▴ 750
1
vote
1
reply
435
views
bcftools update ID keeping only string after ';'
bcftools
updated 7 months ago by 161k • written 7 months ago by ▴ 750
0
votes
1
reply
598
views
Comment: Comment: Is this a valid allele in a vcf?
8 months ago by curious ▴ 750
0
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1
reply
598
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Comment: Comment: Is this a valid allele in a vcf?
8 months ago by curious ▴ 750
0
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5
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598
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Is this a valid allele in a vcf?
vcf
updated 8 months ago by 43k • written 8 months ago by ▴ 750
0
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1
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653
views
Comment: Comment: Is it possible to interpret HGVS without transcript version number?
8 months ago by curious ▴ 750
0
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1
reply
653
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Comment: Comment: Is it possible to interpret HGVS without transcript version number?
8 months ago by curious ▴ 750
0
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0
replies
373
views
Comment: Comment: jannovar download problem
8 months ago by curious ▴ 750
0
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6
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653
views
Is it possible to interpret HGVS without transcript version number?
hgvs
updated 8 months ago by ★ 1.2k • written 8 months ago by ▴ 750
0
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2
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373
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jannovar download problem
jannovar
8 months ago by curious ▴ 750
0
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0
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506
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Comment: Comment: Why does this stop gained result in a longer protein than the canonical version
9 months ago by curious ▴ 750
2
votes
2
replies
506
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Why does this stop gained result in a longer protein than the canonical version
ensembl
updated 9 months ago by 43k • written 9 months ago by ▴ 750
2
votes
2
replies
1.4k
views
Download VCF for dbsnp 156?
dbsnp
updated 9 months ago by 141k • written 9 months ago by ▴ 750
0
votes
1
reply
448
views
Any way to get bcftools to query up to but not including the last site given in a region query
bcftools
updated 10 months ago by 161k • written 10 months ago by ▴ 750
4
votes
3
replies
972
views
What does canonical transcript mean in the context of VEP
vep
updated 10 months ago by 4.2k • written 10 months ago by ▴ 750
0
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0
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468
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Comment: Comment: How to check the imputation quality of genotyping files?
11 months ago by curious ▴ 750
0
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0
replies
737
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Comment: Comment: Low SNP Overlap with Michigan 1KG and TopMed reference panel
11 months ago by curious ▴ 750
0
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0
replies
667
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Comment: Comment: viewing hgvs in genome data viewer
11 months ago by curious ▴ 750
0
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1
reply
667
views
Comment: Comment: viewing hgvs in genome data viewer
11 months ago by curious ▴ 750
1
vote
4
replies
667
views
viewing hgvs in genome data viewer
ncbi hgvs clinvar
11 months ago by curious ▴ 750
0
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0
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305
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Trying to understand the difference between between these two HGVS
hgvs
14 months ago by curious ▴ 750
2
votes
2
replies
766
views
drop duplicate insertion deletions in VCF at same position while keeping one
bcftools
14 months ago by curious ▴ 750
0
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0
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766
views
Comment: Comment: drop duplicate insertion deletions in VCF at same position while keeping one
14 months ago by curious ▴ 750
2
votes
1
reply
840
views
In GWAS what is the point of regressing a quantitative phenotype on covariates first and taking the residuals?
gwas
updated 15 months ago by 3.9k • written 15 months ago by ▴ 750
1
vote
1
reply
481
views
calculating the allele frequency of a gene deletion and duplication
cnv
updated 15 months ago by ★ 2.9k • written 15 months ago by ▴ 750
5
votes
11
replies
2.1k
views
fast way to get last position in a large indexed VCF?
bcftools
updated 19 months ago by 100k • written 19 months ago by ▴ 750
0
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1
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2.1k
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Comment: Comment: fast way to get last position in a large indexed VCF?
19 months ago by curious ▴ 750
0
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1
reply
2.1k
views
Comment: Comment: fast way to get last position in a large indexed VCF?
19 months ago by curious ▴ 750
0
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0
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785
views
Comment: Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
19 months ago by curious ▴ 750
0
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0
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785
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Comment: Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
19 months ago by curious ▴ 750
0
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3
replies
785
views
is it possible to calculate MAF from DS instead of GT when using bcftools +fill-tags?
bcftools
19 months ago by curious ▴ 750
1
vote
0
replies
393
views
Does genomic control have a valid interpretation when there are no genome-wide significant hits
genomic control statistics
21 months ago by curious ▴ 750
0
votes
0
replies
378
views
am I understanding scaled CADD scores correct?
cadd
23 months ago by curious ▴ 750
2
votes
1
reply
492
views
Using snpsift to filter VCF by sample
snpsift
updated 24 months ago by 161k • written 24 months ago by ▴ 750
0
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0
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385
views
Does larger standardized PRS value always means higher risk?
prs
2.1 years ago by curious ▴ 750
0
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0
replies
1.2k
views
Comment: Comment: grep a vcf
2.1 years ago by curious ▴ 750
0
votes
0
replies
547
views
Converting observed heritability to liability scale, how to get standard error?
hertiability greml ldsc
2.2 years ago by curious ▴ 750
0
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0
replies
1.0k
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Comment: Comment: keep samples that carry non-reference allele in list of variants snpeff/snpsift
2.2 years ago by curious ▴ 750
0
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1
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1.0k
views
Comment: Comment: keep samples that carry non-reference allele in list of variants snpeff/snpsift
2.2 years ago by curious ▴ 750
3
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4
replies
1.0k
views
keep samples that carry non-reference allele in list of variants snpeff/snpsift
snpeff snpsift bcftools
2.2 years ago by curious ▴ 750
0
votes
1
reply
720
views
subset vcf to keep only samples heterozygous or homozygous for the alternate allele of a given variant
bcftools
updated 2.2 years ago by ★ 1.1k • written 2.2 years ago by ▴ 750
1
vote
1
reply
1.4k
views
Answer: Answer: Haploview.jar
2.4 years ago by curious ▴ 750
0
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0
replies
3.3k
views
Comment: Comment: Applying Machine Learning on vcf file
2.4 years ago by curious ▴ 750
295 results • Page 1 of 6
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