User: Vincent Laufer

gravatar for Vincent Laufer
Vincent Laufer1.1k
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Posts by Vincent Laufer

<prev • 176 results • page 1 of 18 • next >
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Go Partition Database or another like tool
... Does the [Go Partition Database][1], or any like entity, still exist on the web? To clarify, I want to group pathways together into higher-level super pathways or ontologies. Specifically, I would like to do more than group the pathways based on information content; if at all possible I would like ...
gene ontology hierarchy go dag written 10 weeks ago by Vincent Laufer1.1k
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Options for labeling pathways with higher-order ontologies
... I have some RNA sequencing data on which I have run several pathway analyses. I've noticed that the pathways for my wild type animals relate more strongly to cell cycling, and less strongly to immune response. By contrast, the differentially regulated pathways for my KO animals are heavily "immune" ...
pathways gene ontology kegg go biocarta written 11 weeks ago by Vincent Laufer1.1k
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Comment: C: Selection of a "suggestive" level of association in a GWAS study
... Thank you for clarifying, lindsay! ...
written 11 weeks ago by Vincent Laufer1.1k
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Comment: C: Selection of a "suggestive" level of association in a GWAS study
... this is interesting - of course the bulk of the literature of which I am aware derives an understanding of these levels from the number of effectively independent markers. so would be odd to use a pig based threshold unless they have similar levels of LD and numbers of haploblocks ...
written 3 months ago by Vincent Laufer1.1k
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Comment: C: GWAS, quantitative traits
... perhaps my answer to this post can help you https://www.biostars.org/p/176238 ...
written 5 months ago by Vincent Laufer1.1k
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Comment: C: Comparing the metabolic pathways of pathogen and host using KEGG?
... Do you have the pathways annotated? In what ways do you want to compare them? ...
written 5 months ago by Vincent Laufer1.1k
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Answer: A: Should I include multi-mapped reads for analysis that does not require significa
... @k.woolf - *Because your goals still rely on quantitative comparisons,* I would recommend you use either unique reads only, or that you use a published method of partial transcript estimation. To explore this, let's think about two simple approaches, and try to identify problems. Consider a singl ...
written 13 months ago by Vincent Laufer1.1k
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Comment: C: Turning a Reference Genome Into a File With Single Nucleotide Positions (Essenti
... Hey, I think I understand, but could you elaborate on the format of the referenced genome file? ...
written 13 months ago by Vincent Laufer1.1k
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Comment: C: hands on resources for high school students with advanced CS skills
... not at all. i will remember this for the future. thanks. ...
written 13 months ago by Vincent Laufer1.1k
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Forum: hands on resources for high school students with advanced CS skills
... Hi all, I was hoping to crowdsource ideas to help get a high school student started thinking about biology and informatics. The student I have in mind is a gifted computer programmer, my understanding is he can already work on games requiring 3D modeling, etc. His knowledge of math and biology do ...
forum informatics education high school written 13 months ago by Vincent Laufer1.1k • updated 13 months ago by h.mon27k

Latest awards to Vincent Laufer

Good Answer 9 weeks ago, created an answer that was upvoted at least 5 times. For A: hypergeometric distribution for proximal gene enrichment
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Finding public ChIP-seq data for various tissue types
Appreciated 4 months ago, created a post with more than 5 votes. For A: hypergeometric distribution for proximal gene enrichment
Popular Question 11 months ago, created a question with more than 1,000 views. For Most common method for looking at LD independent SNPs
Popular Question 11 months ago, created a question with more than 1,000 views. For Odds Ratio Confidence Intervals in SNP Test
Popular Question 11 months ago, created a question with more than 1,000 views. For Finding public ChIP-seq data for various tissue types
Popular Question 11 months ago, created a question with more than 1,000 views. For Locus Zoom Issuing "No valid markers in VCF file" on a VCF created in Plink 1.9
Scholar 11 months ago, created an answer that has been accepted. For A: Delete Text between two strings sed, awk
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Hardy-Weinberg assumptions in variant calling
Guru 16 months ago, received more than 100 upvotes.
Popular Question 16 months ago, created a question with more than 1,000 views. For Odds Ratio Confidence Intervals in SNP Test

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