User: Vincent Laufer
Vincent Laufer • 1.1k
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Posts by Vincent Laufer
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... Does the [Go Partition Database][1], or any like entity, still exist on the web?
To clarify, I want to group pathways together into higher-level super pathways or ontologies. Specifically, I would like to do more than group the pathways based on information content; if at all possible I would like ...
written 10 weeks ago by
Vincent Laufer • 1.1k
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... I have some RNA sequencing data on which I have run several pathway analyses.
I've noticed that the pathways for my wild type animals relate more strongly to cell cycling, and less strongly to immune response. By contrast, the differentially regulated pathways for my KO animals are heavily "immune" ...
written 11 weeks ago by
Vincent Laufer • 1.1k
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... Thank you for clarifying, lindsay! ...
written 11 weeks ago by
Vincent Laufer • 1.1k
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... this is interesting - of course the bulk of the literature of which I am aware derives an understanding of these levels from the number of effectively independent markers.
so would be odd to use a pig based threshold unless they have similar levels of LD and numbers of haploblocks ...
written 3 months ago by
Vincent Laufer • 1.1k
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Comment:
C: GWAS, quantitative traits
... perhaps my answer to this post can help you
https://www.biostars.org/p/176238 ...
written 5 months ago by
Vincent Laufer • 1.1k
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... Do you have the pathways annotated?
In what ways do you want to compare them? ...
written 5 months ago by
Vincent Laufer • 1.1k
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... @k.woolf -
*Because your goals still rely on quantitative comparisons,* I would recommend you use either unique reads only, or that you use a published method of partial transcript estimation. To explore this, let's think about two simple approaches, and try to identify problems.
Consider a singl ...
written 13 months ago by
Vincent Laufer • 1.1k
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... Hey,
I think I understand, but could you elaborate on the format of the referenced genome file? ...
written 13 months ago by
Vincent Laufer • 1.1k
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... not at all. i will remember this for the future. thanks. ...
written 13 months ago by
Vincent Laufer • 1.1k
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... Hi all,
I was hoping to crowdsource ideas to help get a high school student started thinking about biology and informatics.
The student I have in mind is a gifted computer programmer, my understanding is he can already work on games requiring 3D modeling, etc. His knowledge of math and biology do ...
written 13 months ago by
Vincent Laufer • 1.1k
• updated
13 months ago by
h.mon ♦ 27k
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