User: krushnach80

gravatar for krushnach80
krushnach80160
Reputation:
160
Status:
Trusted
Location:
Last seen:
2 hours ago
Joined:
1 year, 2 months ago
Email:
k**********@gmail.com

Posts by krushnach80

<prev • 269 results • page 1 of 27 • next >
0
votes
0
answers
111
views
0
answers
Comment: C: WGCNA code for rna-seq data SFT plot issue
... okay i got it my values starts from -0.8 to 0.0 the y axis , so when i change my value of h to -0.2 i get the line but how do i choose value of h ...? ...
written 6 days ago by krushnach80160
0
votes
0
answers
111
views
0
answers
Comment: C: WGCNA code for rna-seq data SFT plot issue
... okay.i will post the plot . Did you check that your values are not all larger (or smaller) than 0.8? what kind of value ? ...
written 6 days ago by krushnach80160
0
votes
0
answers
111
views
0
answers
WGCNA code for rna-seq data SFT plot issue
... library(WGCNA) library(flashClust) options(stringsAsFactors = FALSE); countdata <- read.csv('module500.csv', header=TRUE) dim(countdata) names(countdata) femData <- countdata names(femData) datExpr = as.data.frame(t(femData[, -c(1)])) View(datExpr) d ...
R rna-seq written 6 days ago by krushnach80160
0
votes
1
answer
453
views
1
answers
Comment: C: gnu parallel for RNA seq
... okay i just took the above example of using cufflinks in parallel i just followed the same im not sure what is the correct way , it would be helpful if you could cite me or add to my command .. ...
written 8 days ago by krushnach80160
0
votes
1
answer
453
views
1
answers
Comment: C: gnu parallel for RNA seq
... how can i do the same with tophat command i can use a for loop and do it , but i would like to know how to use parallel with tophat im using paired end files parallel -- 'tophat2 -G gencode.v21.annotation.gtf /run/media/punit/data2/BowtieIndex/hg38' {} > {.}.bam' ::: *.fastq but i think i ...
written 8 days ago by krushnach80160
0
votes
1
answer
161
views
1
answers
Comment: C: Adaptor trimming issue
... i used tophat2 as my aligner ...
written 9 days ago by krushnach80160
0
votes
1
answer
161
views
1
answers
Comment: C: Adaptor trimming issue
... okay i will look into it , but do you think that is the only issue which is lead to low discordant pair ? ...
written 9 days ago by krushnach80160
0
votes
1
answer
161
views
1
answers
Comment: C: Adaptor trimming issue
... okay my fastqc results only shows...illumina adaptors ,rest all i dont see anything . But for this `"presence of rRNA in reads"` i am not sure if that is the case, but i would like to know how to check that is there a way ? ...
written 9 days ago by krushnach80160
0
votes
1
answer
161
views
1
answers
Comment: C: Adaptor trimming issue
... im not sure about enriching RNA sample , could you explain it ? ...
written 9 days ago by krushnach80160
0
votes
1
answer
161
views
1
answers
Comment: C: Adaptor trimming issue
... its a HL60 data set . ...
written 9 days ago by krushnach80160

Latest awards to krushnach80

Popular Question 5 weeks ago, created a question with more than 1,000 views. For How to import huge .csv files in R studio?
Voter 7 months ago, voted more than 100 times.
Centurion 8 months ago, created 100 posts.
Commentator 9 months ago, created a comment with at least 3 up-votes. For C: differential gene expression analysis
Supporter 9 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 758 users visited in the last hour