User: krushnach80

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krushnach80850
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Posts by krushnach80

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Comment: C: Adapters fro nano pore sequence
... not sure i have to ask my collaborator what exactly happened ...
written 4 weeks ago by krushnach80850
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Comment: C: Adapters fro nano pore sequence
... okay I tried porechop ..but still i do see adapter not sure what isn't it trimming...its nextera adapter in the fastqc reports it says. ...
written 5 weeks ago by krushnach80850
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Comment: C: NanoPack: Scripts for long read sequencing data processing and analysis: NanoPlo
... guppy does adapter trimming what i read ,but i ran into my data there is adapter contamination. is there a way to clean it using your tool? ...
written 5 weeks ago by krushnach80850
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Comment: C: Adapters fro nano pore sequence
... nanopack doesn't have tool to trim adapter sequence? i used nanofilt to trim though. ...
written 5 weeks ago by krushnach80850
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Comment: C: DESeq2 compare all levels
... okay that sounds simple and straightforward ...
written 3 months ago by krushnach80850
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Comment: C: DESeq2 compare all levels
... in case of LRT what i get is we do get genes that vary across condition. Is it possible to know if a gene is deferentially expressed which condition is it coming from ? ...
written 3 months ago by krushnach80850
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Comment: C: How to find the differences in aligned bam files
... if you need to do PCA or clustering take rlog values which i did after running it in deseq2 ...
written 4 months ago by krushnach80850
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Comment: C: How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go?
... I tried with dummy data set it worked but in the actual data set it not working when i run to calculate dn/ds ...
written 5 months ago by krushnach80850
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Comment: C: Renaming fasta headers according to a matching name list
... seqkit is a life saver ...
written 5 months ago by krushnach80850
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Comment: C: make fasta sequence which is multiple of three
... thanks will look into it trimAI ...
written 5 months ago by krushnach80850

Latest awards to krushnach80

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