User: krushnach80

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krushnach80440
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Posts by krushnach80

<prev • 523 results • page 1 of 53 • next >
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Comment: C: Volcano Plot from DEseq2
... looks pretty cool will give it a try ...
written 7 days ago by krushnach80440
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Comment: C: How to deal with the case that one gene symbol matches multiple ensembl ids?
... yes..thats what you have to do ...
written 11 days ago by krushnach80440
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Comment: C: How to deal with the case that one gene symbol matches multiple ensembl ids?
... the issue is with the .decimal point after your ensg ID remove them . ...
written 11 days ago by krushnach80440
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Comment: C: Remove columns and rows which have only NAs without deleting all the data
... okay strange ...I will get back .let me see the original file again..may be some error i have made.. ...
written 14 days ago by krushnach80440
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Comment: C: Remove columns and rows which have only NAs without deleting all the data
... [this is the mutation % data ][1] for example you can have a look at the data link below...one of the gene LSM12 1.20% is not present in df2 i was trying something similar but im missing these ...what is wrong not sure... [1]: https://drive.google.com/open?id=1kjmIydNOJgkthgTmhXfVicSOMD1V7aYd ...
written 14 days ago by krushnach80440
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Comment: C: Remove columns and rows which have only NAs without deleting all the data
... okay..so I want to remove all the genes which doesn;t contain any mutation at all in any samples, as an example NPM1 contains mutation is 50 patient so i want to keep that row, in other words keep that rows[genes] which contain at least one mutation in any patient sample ...
written 14 days ago by krushnach80440
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Comment: C: Remove columns and rows which have only NAs without deleting all the data
... [data example][1] [1]: https://drive.google.com/open?id=1t549QS4QLJAOPzMK_EWAd7HTtLW-3DOX ...
written 14 days ago by krushnach80440
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Comment: C: Remove columns and rows which have only NAs without deleting all the data
... this is simple as i was thinking of how to loop through the rows and columns which i haven;t figured out yet... this error `"Error: unexpected ')' in "x[rowSumsis.na(x))""` i guess rowSumis.na not a function..perhaps i guess that was a typo...this works " x[rowSums(is.na(x))<=1,]" its wo ...
written 15 days ago by krushnach80440
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Comment: C: Remove columns and rows which have only NAs without deleting all the data
... how about removing rows with all NA but keep any row that contain one observation along with NA? ...
written 17 days ago by krushnach80440
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Comment: C: PCA in a RNA seq analysis
... the thread is getting better and better in context of PCA ...
written 18 days ago by krushnach80440

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