User: krushnach80

gravatar for krushnach80
krushnach80110
Reputation:
110
Status:
Trusted
Location:
Last seen:
9 hours ago
Joined:
10 months, 1 week ago
Email:
k**********@gmail.com

Posts by krushnach80

<prev • 155 results • page 1 of 16 • next >
0
votes
3
answers
136
views
3
answers
Comment: C: Gene set enrichment analysis cuffdiff output
... can you suggest me a way to do ranking ? ...
written 8 days ago by krushnach80110
0
votes
0
answers
61
views
0
answers
(Closed) TCGA AML data set analysis
... I did look into TCGA datasets it seems that the AML samples they dont contain normal patient samples.If I have to do a comparative analysis how am I suppose to do since I need control I suppose any suggestion or help would be highly appreciated . ...
rna-seq written 10 days ago by krushnach80110
6
votes
3
answers
136
views
5 follow
3
answers
Gene set enrichment analysis cuffdiff output
... I have done cuffdiff analysis now I want to go for Gene set enrichment analysis .Any suggestion how do I proceed from the cufdiff output for Gene set enrichment analysis , any suggestion or ways to do it would be really helpful . ...
rna-seq written 10 days ago by krushnach80110 • updated 9 days ago by Sreeraj Thamban30
0
votes
1
answer
123
views
1
answers
Comment: C: featurecount command to extract read count from bam files
... yes Im using the output for deseq2 ...
written 4 weeks ago by krushnach80110
5
votes
1
answer
123
views
1
answer
featurecount command to extract read count from bam files
... I m using this featurecount command to extract read count from my bam files , is it the correct one im using or there is some issue with my command . featureCounts -T 40 -p -A -s -f -O -t exon -g gene_id -a /home/punit/ERCCgencode.v21.annotation.gtf -o /home/punit/FCOUNT/newhl60.txt ~/bamfiles ...
rna-seq written 4 weeks ago by krushnach80110 • updated 4 weeks ago by Devon Ryan68k
0
votes
1
answer
540
views
1
answers
Comment: C: Plot heatmap of differentially expressed genes identified by DESeq2 a R coding p
... I was looking for this thank your for the solution but i have one doubt why are you using this can you explain `& !is.na(res$padj),`? ...
written 5 weeks ago by krushnach80110
0
votes
2
answers
148
views
2
answers
Comment: C: Deseq2 differential result
... yes , I was wondering if I can filter result out instead of getting the final values where I would set threshold to filter result ...
written 5 weeks ago by krushnach80110
0
votes
2
answers
148
views
2
answers
Comment: C: Deseq2 differential result
... no not exactly , I was wondering can i get it done while running the pipeline ...
written 5 weeks ago by krushnach80110
0
votes
2
answers
148
views
2
answers
Comment: C: Deseq2 differential result
... yes I know but as I said i have like 18000 in my list and most of them wouldn't be of much use so how do I filter out the result .Is it based on some cutoff or what other parameters ? ...
written 5 weeks ago by krushnach80110
0
votes
2
answers
148
views
2
answers
Comment: C: Deseq2 differential result
... okay so i have to decide what threshold I m going to use that is what you mean? ...
written 5 weeks ago by krushnach80110

Latest awards to krushnach80

Voter 4 months ago, voted more than 100 times.
Centurion 4 months ago, created 100 posts.
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: differential gene expression analysis
Supporter 5 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 855 users visited in the last hour