User: krushnach80

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krushnach80460
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Posts by krushnach80

<prev • 529 results • page 1 of 53 • next >
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Comment: C: fgsea tutorial issue with BiocParallel
... yes as i updated things were broken due to one or the other dependencies .. ...
written 2 days ago by krushnach80460
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Comment: C: [DESeq2 multiple treatments vs. 1-by-1] Inconsistant p-adj
... I too have the same of similar doubt ,so im comparing multiple cell types each having its own control sample based on cell hierarchy, for normalisation purpose i use all the sample for pca ,clustering ,correlation etc , but when it comes to doing a differential expression i have to do each of them ...
written 8 days ago by krushnach80460
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Comment: C: Question about identification of subgroups by a set of genes
... TCGA ,firebrowse to start with ...
written 12 days ago by krushnach80460
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Comment: C: How to calculate the Pearson correlation coefficients between a list of genes?
... you can subset isn't it based on your desired threshold !! ...
written 7 weeks ago by krushnach80460
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Comment: C: How to obtain mRNA splicing variants for a given chromosomal position?
... "I have chromosomal location and I want to get all the mRNA spicing variants generated from the chromosomal position. Please suggest me what should I do." may be you have to look for transcript quantification go for kallisto it might give you head start ...
written 8 weeks ago by krushnach80460
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Comment: C: Differential analysis show different results
... "data normalisation should be conducted on the entire cohort, i.e., all samples. By, thereafter, including certain categorical variables into your DESeq2 design model, you can then derive p-values for comparisons between different sub-groups." this brings me the question ,lets say here in this case ...
written 8 weeks ago by krushnach80460
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Comment: C: Volcano Plot from DEseq2
... looks pretty cool will give it a try ...
written 10 weeks ago by krushnach80460
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Comment: C: How to deal with the case that one gene symbol matches multiple ensembl ids?
... yes..thats what you have to do ...
written 10 weeks ago by krushnach80460
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Comment: C: How to deal with the case that one gene symbol matches multiple ensembl ids?
... the issue is with the .decimal point after your ensg ID remove them . ...
written 10 weeks ago by krushnach80460
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Comment: C: Remove columns and rows which have only NAs without deleting all the data
... okay strange ...I will get back .let me see the original file again..may be some error i have made.. ...
written 11 weeks ago by krushnach80460

Latest awards to krushnach80

Popular Question 1 day ago, created a question with more than 1,000 views. For Deseq2 differential result
Great Question 1 day ago, created a question with more than 5,000 views. For extract dendrogram cluster from pheatmap
Popular Question 7 days ago, created a question with more than 1,000 views. For Deseq2 differential result
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Epic Question 4 weeks ago, created a question with more than 10,000 views. For How to import huge .csv files in R studio?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Deseq2 differential result
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Deseq2 differential result
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Deseq2 differential result
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Popular Question 3 months ago, created a question with more than 1,000 views. For Deseq2 differential result
Great Question 3 months ago, created a question with more than 5,000 views. For How to import huge .csv files in R studio?
Popular Question 3 months ago, created a question with more than 1,000 views. For Deseq2 differential result
Popular Question 3 months ago, created a question with more than 1,000 views. For Deseq2 differential result
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Popular Question 4 months ago, created a question with more than 1,000 views. For heatmap resolution issue
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