User: krushnach80

gravatar for krushnach80
krushnach80500
Reputation:
500
Status:
Trusted
Location:
Last seen:
7 hours ago
Joined:
2 years, 10 months ago
Email:
k**********@gmail.com

Posts by krushnach80

<prev • 554 results • page 1 of 56 • next >
0
votes
1
answer
90
views
1
answers
Comment: C: Relapse vs gene expression figure
... can you post a sample figure? ...
written 7 hours ago by krushnach80500
0
votes
5
answers
3.0k
views
5
answers
Comment: C: Making TSS plots for some genes for a particular histone mark
... the pdf is not there can the link is dead .Can you share the pdf again? ...
written 5 days ago by krushnach80500
0
votes
2
answers
91
views
2
answers
Answer: A: Average daraframe columns according to a corresponding vector.
... library(dplyr) Final_average <- dataframe %>% mutate(lm10 = rowMeans(.[grep("Lm", names(.))]), SL10 = rowMeans(.[grep("SL", names(.))]), Control10= rowMeans(.[grep("Control",names(.))])) This ...
written 11 days ago by krushnach80500
0
votes
4
answers
35k
views
4
answers
Comment: C: from .BAM to .BAI using samtools
... this works fine given that parallel installed `" parallel samtools index ::: *.bam"` as @Pierre Lindenbaum answered ...
written 11 days ago by krushnach80500
0
votes
3
answers
196
views
3
answers
Comment: C: Visualisation of GO Terms
... I saw one of the paper [Integrated proteomic analysis of tumor necrosis factor α and interleukin 1β-induced endothelial inflammation ][1] i have query regarding the figure "Fig. 5. TNFα affects immune- and cardiovascular-specific processes in endothelial cells. Graphic representation of enriched GO ...
written 8 weeks ago by krushnach80500
0
votes
1
answer
3.0k
views
1
answers
Comment: C: HOMER annotatePeaks.pl problem
... okay may be i can drop you a mail ...with the info the experiment design ...
written 9 weeks ago by krushnach80500
0
votes
1
answer
3.0k
views
1
answers
Comment: C: HOMER annotatePeaks.pl problem
... @Kevin how do i see the occupancy of a gene with its target genes from this homer analysis ,idea is to see the occupancy of a gene to its target genes upstream and downstream of the TSS like 500 or 1000 bp can you give me some direction ? how do i proceed after doing the peak annotation ...
written 9 weeks ago by krushnach80500
0
votes
1
answer
256
views
1
answers
Comment: C: Gene and pseudogenes
... so you did use deseq2 ? i guess or something else ? ...
written 9 weeks ago by krushnach80500
0
votes
1
answer
206
views
1
answers
Comment: C: WGNCA (correlation network): how can I incorporate mutant and wildtype into the
... "such as regression modeling" you had one post which showed regression modelling in biostar , can you provide the link ,i did look but couldn;t find it, as i couldn;t recollect the question you had answered for .. ...
written 9 weeks ago by krushnach80500
0
votes
6
answers
15k
views
6
answers
Comment: C: Remove mitochondrial reads from BAM files
... can i do it for multiple bam files in a folder using parallel ? "samtools view -h this.bam | awk '{if($3 != "chrM" && $3 != "chrUn"){print $0}}' | samtools view -Shb - > this.filter.bam ...
written 9 weeks ago by krushnach80500

Latest awards to krushnach80

Popular Question 13 days ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 19 days ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Student 5 weeks ago, asked a question with at least 3 up-votes. For extract dendrogram cluster from pheatmap
Epic Question 6 weeks ago, created a question with more than 10,000 views. For How to import huge .csv files in R studio?
Popular Question 6 weeks ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Taking out Heatmap cluster from heatmaply
Popular Question 6 weeks ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 7 weeks ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 8 weeks ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition
Popular Question 8 weeks ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Deseq2 differential result
Popular Question 9 weeks ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition
Popular Question 10 weeks ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition
Popular Question 11 weeks ago, created a question with more than 1,000 views. For transcriptome index for Kalisto
Popular Question 11 weeks ago, created a question with more than 1,000 views. For transcriptome index for Kalisto
Popular Question 12 weeks ago, created a question with more than 1,000 views. For transcriptome index for Kalisto
Popular Question 3 months ago, created a question with more than 1,000 views. For transcriptome index for Kalisto
Popular Question 3 months ago, created a question with more than 1,000 views. For transcriptome index for Kalisto
Popular Question 3 months ago, created a question with more than 1,000 views. For WGCNA code for chooseTopHubInEachModule
Epic Question 3 months ago, created a question with more than 10,000 views. For How to import huge .csv files in R studio?
Popular Question 4 months ago, created a question with more than 1,000 views. For Deseq2 differential result
Popular Question 4 months ago, created a question with more than 1,000 views. For Deseq2 differential result
Great Question 4 months ago, created a question with more than 5,000 views. For extract dendrogram cluster from pheatmap
Popular Question 4 months ago, created a question with more than 1,000 views. For Deseq2 differential result
Popular Question 4 months ago, created a question with more than 1,000 views. For Deseq2 differential result

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1994 users visited in the last hour