User: krushnach80

gravatar for krushnach80
krushnach80630
Reputation:
630
Status:
Trusted
Location:
Last seen:
2 hours ago
Joined:
3 years, 5 months ago
Email:
k**********@gmail.com

Posts by krushnach80

<prev • 597 results • page 1 of 60 • next >
0
votes
3
answers
4.0k
views
3
answers
Comment: C: ATAC-seq DE analysis
... I got it merging bam files you suggested if I use macs2. My doubt is if I have different bam files like from different condition when I merge them, how do I identify which bam file is from what condition ? ...
written 2 hours ago by krushnach80630
0
votes
3
answers
4.0k
views
3
answers
Comment: C: ATAC-seq DE analysis
... "Probably the safest is to merge all BAM files " never used it but how do I identify which bam file is what sample? ...
written 19 hours ago by krushnach80630
0
votes
2
answers
261
views
2
answers
Comment: C: ATAC-seq sample normalization (quantil normalization)
... I asked my doubt on that thread .. ...
written 20 hours ago by krushnach80630
0
votes
3
answers
4.0k
views
3
answers
Comment: C: ATAC-seq DE analysis
... "peaks.narrowPeak" I got to this point but a little doubt, let say I have multi condition data ,so the "peaks.narrowPeak" would be combination of all the peak called by any peak calling tool .So to get the "peaks.narrowPeak" file do I have merge all the peak files or overlap the peak files ? ...
written 20 hours ago by krushnach80630
0
votes
2
answers
261
views
2
answers
Comment: C: ATAC-seq sample normalization (quantil normalization)
... I tired to use rawcount once but later resorted to HOMER for all the analysis, I want to know how do you get raw counts from ATAC seq data ? I tried deeptools but it takes a bit of time not sure why...apart from deeptools I tired to use feature count but not able to do it.It is bit more complicated ...
written 1 day ago by krushnach80630
0
votes
0
answers
93
views
0
answers
Comment: C: differential network analysis
... WGCNA is the best place to start ...
written 20 days ago by krushnach80630
0
votes
1
answer
5.1k
views
1
answers
Comment: C: WGCNA modules and categorical traits relationship
... i asked other WGCNA question , so here the caseControl is one of the data in the dataframe inside each module ..if i understand how the basic glm runs... ...
written 7 weeks ago by krushnach80630
0
votes
1
answer
1.2k
views
1
answers
Comment: C: WGCNA analysis in normal and tumor case
... old question but its more related to R ,I get module plus the tumour status as one data frame , " data=data" this is the total dataframe .isnt it? ...
written 7 weeks ago by krushnach80630
0
votes
4
answers
14k
views
4
answers
Comment: C: Is There A Easy Way To Find The Gene Annotations For Features In Bed File?
... it is gencode annotation i aligned my atac seq reads to it ...
written 8 weeks ago by krushnach80630
0
votes
0
answers
969
views
0
answers
Comment: C: Using EnrichedHeatmap for visualization of NGS experiments
... is it possible to add gene annotation based on region wise on the figure? ...
written 8 weeks ago by krushnach80630

Latest awards to krushnach80

Popular Question 22 days ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Good Question 9 weeks ago, asked a question that was upvoted at least 5 times. For extract dendrogram cluster from pheatmap
Epic Question 3 months ago, created a question with more than 10,000 views. For How to import huge .csv files in R studio?
Popular Question 3 months ago, created a question with more than 1,000 views. For Java TreeView like tools
Popular Question 4 months ago, created a question with more than 1,000 views. For Java TreeView like tools
Popular Question 4 months ago, created a question with more than 1,000 views. For WGCNA code for chooseTopHubInEachModule
Popular Question 5 months ago, created a question with more than 1,000 views. For Java TreeView like tools
Popular Question 5 months ago, created a question with more than 1,000 views. For WGCNA code for chooseTopHubInEachModule
Teacher 5 months ago, created an answer with at least 3 up-votes. For C: How to do the WGCNA in R
Appreciated 5 months ago, created a post with more than 5 votes. For extract dendrogram cluster from pheatmap
Popular Question 7 months ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 7 months ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Student 8 months ago, asked a question with at least 3 up-votes. For extract dendrogram cluster from pheatmap
Epic Question 8 months ago, created a question with more than 10,000 views. For How to import huge .csv files in R studio?
Popular Question 8 months ago, created a question with more than 1,000 views. For Taking out Heatmap cluster from heatmaply
Popular Question 8 months ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 8 months ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 8 months ago, created a question with more than 1,000 views. For WGCNA code for rna-seq data SFT plot issue
Popular Question 9 months ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition
Popular Question 9 months ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition
Popular Question 9 months ago, created a question with more than 1,000 views. For Deseq2 differential result
Popular Question 9 months ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition
Popular Question 9 months ago, created a question with more than 1,000 views. For scatter plot in ggplot2 two colour for two different condition

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1192 users visited in the last hour