User: krushnach80

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krushnach80580
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Posts by krushnach80

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Comment: C: Parallel processing in R
... "Silhouette method" i was trying this which i though this way first i would find the optimum number of cluster using gap statistic method then i will find using "Silhouette method" but both of them not so similar result . But the seurat method you wrote about that i read for single cell , conceptua ...
written 10 days ago by krushnach80580
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Comment: C: Parallel processing in R
... other methods ? can you cite a few ...
written 10 days ago by krushnach80580
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Comment: C: Parallel processing in R
... in the edited version of the clusgap function what is the "B" argument for? got it bootstrapping ...
written 11 days ago by krushnach80580
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Comment: C: How to find p-value of the modules in WGCNA?
... How do you combine all those modules ,as if i understand once you get modules each modules contains sample and gene expression ,but here in your Mydata what i see is each sample trait+values in modules. Can you explain ? ...
written 19 days ago by krushnach80580
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Comment: C: WGCNA analysis in normal and tumor case
... you can just add 0 or 1 as tumour status ...
written 19 days ago by krushnach80580
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Comment: C: Modular differential connectivity
... this is what i been looking for when I search "module differential connectivity " i get this library "DGCA" .Its bit confusing if it can be done using WGCNA only or the DGCA library . ...
written 24 days ago by krushnach80580
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Comment: C: Clustering of DAVID gene enrichment results from gene expression studies
... is it possible to implement the same with other output say enrichr or toppgene output? ...
written 4 weeks ago by krushnach80580
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Comment: C: Gene co-expression network construction
... WGCNA is the other way to build co-expression network. For that you need a gene expression matrix file and trait file perhaps . ...
written 5 weeks ago by krushnach80580
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Comment: C: Variability explained by a core of genes
... okay will wait for the Bioc release ...
written 6 weeks ago by krushnach80580
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Comment: C: Variability explained by a core of genes
... it should be updated or i have to install the development version? to get this new functionality ...
written 6 weeks ago by krushnach80580

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