User: Picasa

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Picasa270
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Posts by Picasa

<prev • 190 results • page 1 of 19 • next >
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Comment: C: Mismatch setting for bwa mem ?
... This is the mismatch penalty for the score but it does not say how many mismatchs are allowed ...
written 26 days ago by Picasa270
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Mismatch setting for bwa mem ?
... Hi, Can we set the mismatch number for bwa mem ? And by the way what is the default number ? Thanks ...
bwa mem mismatch written 26 days ago by Picasa270
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Comment: C: Help for limma DE interpretation.
... Thanks for your help. So for instance, Gene 1 is up regulated under condition 1 ? and Gene 2 is up regulared in COnditon 2 40x more than condition 1 ? ...
written 26 days ago by Picasa270
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Help for limma DE interpretation.
... Hi everybody. Maybe my questions will sound stupid but sorry I am a beginner in this domain: I am not sure about the interpretation of DE analysis from limma. My goal is to list the genes that are up and down regulated between 2 conditions (cond 1 and cond 2). cont.matrix <- makeContrast ...
rnaseq limma written 27 days ago by Picasa270 • updated 27 days ago by Devon Ryan62k
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Comment: C: PCA from kallisto output
... From what I understand, TPM is already normalized no ? The package you mentioned seems to recommend to apply `rlog` on counts data. ...
written 4 weeks ago by Picasa270
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PCA from kallisto output
... Hi, My goal is to plot a simple PCA to compare samples after kallisto run. I am a bit confuse how to do it. Should I take the "est_counts" or the "TPM" values ? ...
kallsito written 4 weeks ago by Picasa270 • updated 4 weeks ago by Lando Ringel430
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Comment: C: PCA tpm fpkm
... prcomp needs a matrix with genes as columns right ? ...
written 4 weeks ago by Picasa270
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Comment: A: blastn staxids returning N/A
... I got the same problem .. ...
written 5 weeks ago by Picasa270
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Comment: C: Any advice for a de novo genome assembly
... Hi Brian, Can you explain why normalization is more complicated when reads are in multiple libraries (so different insert size) ? ...
written 5 weeks ago by Picasa270
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Comment: C: What Is A Typical Salary Range For Bioinformatician In Singapore
... I hesitate to look for a job in Singapore; as I heard that life out there is expensive. Do you have more information about the salary nowadays ? ...
written 6 weeks ago by Picasa270

Latest awards to Picasa

Popular Question 16 days ago, created a question with more than 1,000 views. For Best strategy for de novo assembly with illumina reads ?
Centurion 4 months ago, created 100 posts.
Student 5 months ago, asked a question with at least 3 up-votes. For Best strategy for de novo assembly with illumina reads ?
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Scholar 7 months ago, created an answer that has been accepted. For A: 16S Paired-End Illumina MiSeq Data in Qiime
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