User: Picasa

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Picasa300
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Posts by Picasa

<prev • 205 results • page 1 of 21 • next >
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MAKER annotation post processing (AED score)
... Hi, I have successfully annotated my genome with MAKER. Now I have a gff file that I want to post process /filter. In particular, I would like to discard gene that is below a certain AED score. 1) Is there an AED treshold from where a gene is not strongly supported ? if yes, do you have some refe ...
aed maker written 4 weeks ago by Picasa300
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Answer: A: Error For End Coordinate When Running Cuffdiff
... I have the same error even without using the -s in cuffmerge ... any solution ? ...
written 10 weeks ago by Picasa300
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Comment: C: Using RNA seq for genome annotation
... Well Maker needs (not mandatory but recommended) transcriptome to infer gene with gene predictor. ...
written 11 weeks ago by Picasa300
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Comment: C: Using RNA seq for genome annotation
... yes, and i want to provide rna seq evidence ...
written 11 weeks ago by Picasa300
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Using RNA seq for genome annotation
... Hi, I would like to provide rna seq evidence to Maker for genome annotation. For the transcriptome building, I have done a reference based assembly with STAR+cufflinks but I am not sure if it is the correct way, Do you have some experience with this ? ...
annotation maker written 11 weeks ago by Picasa300 • updated 11 weeks ago by Ben50
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Comment: C: Rna-Seq Contaminants Assembling Likelihood
... Hi, I like your explanation, do you have papers that describe this possibility of chimeric contigs ? ...
written 3 months ago by Picasa300
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Comment: C: What can I do after my Pacbio genome assembly ?
... Hi Roxane, I was reading this for quiver https://github.com/PacificBiosciences/GenomicConsensus and I would like to know if you have some benchmark using the different algorithm proposed by variantCaller (quiver,arrow,plurality,poa,best). I mean, does it change a lot ? The link above said that ...
written 3 months ago by Picasa300
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Comment: C: Best de novo genome assemblies using only Illumina data ??
... Maybe I was not clear with my question. I am not asking which assembler is the best, but I am looking just for papers with different project that have done a de novo genome assembly and had good results. (like the panda genome) http://www.nature.com/nature/journal/v463/n7279/full/nature08696.htm ...
written 4 months ago by Picasa300
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Best de novo genome assemblies using only Illumina data ??
... Hi, I am looking for papers of the best de novo assemblies ever done with (and only) Illumina data for differents kind of organisms (bacteria, insect, mammals, plants etc.) By best I mean accurate, not fragmented (high N50), no contaminations, good completeness scores etc. Do you know any ? Than ...
de novo assembly illumina written 4 months ago by Picasa300
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Comment: C: What can I do after my Pacbio genome assembly ?
... I have the sequencing coverage information; but why is it important ? ...
written 5 months ago by Picasa300

Latest awards to Picasa

Popular Question 5 weeks ago, created a question with more than 1,000 views. For PCA on VCF
Popular Question 5 months ago, created a question with more than 1,000 views. For Best strategy for de novo assembly with illumina reads ?
Popular Question 6 months ago, created a question with more than 1,000 views. For Best strategy for de novo assembly with illumina reads ?
Centurion 10 months ago, created 100 posts.
Student 11 months ago, asked a question with at least 3 up-votes. For Best strategy for de novo assembly with illumina reads ?
Supporter 12 months ago, voted at least 25 times.
Scholar 13 months ago, created an answer that has been accepted. For A: 16S Paired-End Illumina MiSeq Data in Qiime
Rising Star 14 months ago, created 50 posts within first three months of joining.

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