User: Picasa
Picasa • 460
- Reputation:
- 460
- Status:
- Trusted
- Location:
- Last seen:
- 5 days, 19 hours ago
- Joined:
- 3 years, 5 months ago
- Email:
- p*********@gmail.com
Posts by Picasa
<prev
• 271 results •
page 1 of 28 •
next >
0
votes
2
answers
147
views
2
answers
Comment:
C: Location of centromere
... Thanks for the papers ! , I will take a look. ...
written 28 days ago by
Picasa • 460
0
votes
2
answers
147
views
2
answers
Comment:
C: Location of centromere
... could you give more explanation please ? ...
written 29 days ago by
Picasa • 460
0
votes
2
answers
147
views
2
answers
Comment:
C: Location of centromere
... Yes it's a PacBio assembly at contig level (around 10k contigs).
My species has 12 pairs of chromosomes. ...
written 29 days ago by
Picasa • 460
0
votes
2
answers
147
views
2
answers
Comment:
C: Location of centromere
... it's a complete de novo assembly of non model organism. ...
written 29 days ago by
Picasa • 460
1
vote
2
answers
147
views
2
answers
... Hi,
I am looking to find a way to locate centromeres in a genome assembly.
Any recommendations ?
Thanks for your help. ...
written 4 weeks ago by
Picasa • 460
0
votes
1
answer
562
views
1
answers
... Hi, what is the blue and purple color ? ...
written 7 weeks ago by
Picasa • 460
0
votes
0
answers
242
views
0
answers
... Yes these are eukaryotes but non mordel organisms (so not on Ensembl).
I ll take a look at the wiki page. Thanks. ...
written 11 weeks ago by
Picasa • 460
2
votes
0
answers
242
views
0
answers
... Hi everybody,
Do you any tools that could perform multiple whole genome alignment ?
I have 10 species of about 500Mb genome size.
I know already progressiveMauve and progressiveCactus but they are slow as hell..
If you have any recommendation, it would help a lot me a lot.
Thanks. ...
written 11 weeks ago by
Picasa • 460
0
votes
0
answers
192
views
0
answers
Comment:
C: EBI submission and AGP ?
... Thanks Juke-34.
But that's not practical ? I want to allow user to download the final genome (at scaffold level) and not contigs + agp. ...
written 5 months ago by
Picasa • 460
2
votes
0
answers
192
views
0
answers
... Hi,
Has anybody already submitted a genome in EBI ?
For the scaffold assembly they ask for a fasta file and an AGP file.
see this link: https://ena-docs.readthedocs.io/en/latest/cli_02.html
I just have the fasta (assembly) but how to generate this AGP ?
Thanks a lot. ...
written 5 months ago by
Picasa • 460
Latest awards to Picasa
Popular Question
27 days ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
4 weeks ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
6 weeks ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
8 weeks ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Sequence and assemble polyploid genome ?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Tool for de novo assembly evaluation ??
Popular Question
3 months ago,
created a question with more than 1,000 views.
For database for fungus ?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For database for fungus ?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For database for fungus ?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
4 months ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
7 months ago,
created a question with more than 1,000 views.
For mate pair trimming ?
Popular Question
7 months ago,
created a question with more than 1,000 views.
For Coverage per contig from a BAM file
Popular Question
7 months ago,
created a question with more than 1,000 views.
For database for fungus ?
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Coverage per contig from a BAM file
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Coverage per contig from a BAM file
Popular Question
8 months ago,
created a question with more than 1,000 views.
For What is the best way to compute scaffold coverage ?
Popular Question
8 months ago,
created a question with more than 1,000 views.
For Coverage per contig from a BAM file
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1607 users visited in the last hour