User: Picasa

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Picasa460
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Posts by Picasa

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Comment: C: Location of centromere
... Thanks for the papers ! , I will take a look. ...
written 28 days ago by Picasa460
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Comment: C: Location of centromere
... could you give more explanation please ? ...
written 29 days ago by Picasa460
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Comment: C: Location of centromere
... Yes it's a PacBio assembly at contig level (around 10k contigs). My species has 12 pairs of chromosomes. ...
written 29 days ago by Picasa460
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Comment: C: Location of centromere
... it's a complete de novo assembly of non model organism. ...
written 29 days ago by Picasa460
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Location of centromere
... Hi, I am looking to find a way to locate centromeres in a genome assembly. Any recommendations ? Thanks for your help. ...
genome centromere written 4 weeks ago by Picasa460
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Comment: C: mummerplot for genome self alignment NOT yielding full length diagonal graph
... Hi, what is the blue and purple color ? ...
written 7 weeks ago by Picasa460
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Comment: C: Multiple whole genome alignment tools ?
... Yes these are eukaryotes but non mordel organisms (so not on Ensembl). I ll take a look at the wiki page. Thanks. ...
written 11 weeks ago by Picasa460
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Multiple whole genome alignment tools ?
... Hi everybody, Do you any tools that could perform multiple whole genome alignment ? I have 10 species of about 500Mb genome size. I know already progressiveMauve and progressiveCactus but they are slow as hell.. If you have any recommendation, it would help a lot me a lot. Thanks. ...
alignment multiple whole genome written 11 weeks ago by Picasa460
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Comment: C: EBI submission and AGP ?
... Thanks Juke-34. But that's not practical ? I want to allow user to download the final genome (at scaffold level) and not contigs + agp. ...
written 5 months ago by Picasa460
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EBI submission and AGP ?
... Hi, Has anybody already submitted a genome in EBI ? For the scaffold assembly they ask for a fasta file and an AGP file. see this link: https://ena-docs.readthedocs.io/en/latest/cli_02.html I just have the fasta (assembly) but how to generate this AGP ? Thanks a lot. ...
ebi agp written 5 months ago by Picasa460

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