User: Picasa
Picasa • 290
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Posts by Picasa
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... I have the same error even without using the -s in cuffmerge ... any solution ? ...
written 19 days ago by
Picasa • 290
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... Well Maker needs (not mandatory but recommended) transcriptome to infer gene with gene predictor.
...
written 20 days ago by
Picasa • 290
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... yes, and i want to provide rna seq evidence ...
written 20 days ago by
Picasa • 290
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... Hi,
I would like to provide rna seq evidence to Maker for genome annotation.
For the transcriptome building, I have done a reference based assembly with STAR+cufflinks but I am not sure if it is the correct way,
Do you have some experience with this ? ...
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... Hi, I like your explanation, do you have papers that describe this possibility of chimeric contigs ? ...
written 7 weeks ago by
Picasa • 290
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... Hi Roxane,
I was reading this for quiver
https://github.com/PacificBiosciences/GenomicConsensus
and I would like to know if you have some benchmark using the different algorithm proposed by variantCaller (quiver,arrow,plurality,poa,best).
I mean, does it change a lot ? The link above said that ...
written 7 weeks ago by
Picasa • 290
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... Maybe I was not clear with my question.
I am not asking which assembler is the best, but I am looking just for papers with different project that have done a de novo genome assembly and had good results.
(like the panda genome)
http://www.nature.com/nature/journal/v463/n7279/full/nature08696.htm ...
written 12 weeks ago by
Picasa • 290
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... Hi,
I am looking for papers of the best de novo assemblies ever done with (and only) Illumina data for differents kind of organisms (bacteria, insect, mammals, plants etc.)
By best I mean accurate, not fragmented (high N50), no contaminations, good completeness scores etc.
Do you know any ?
Than ...
written 12 weeks ago by
Picasa • 290
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... I have the sequencing coverage information; but why is it important ? ...
written 3 months ago by
Picasa • 290
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... Hi Roxane and many thanks for your help !
However I don't have .bas/bax.h5 files but only fastq (my raw reads are fastq files) so can I still use pbalign with your command ? I mean, does it recognize fastq ? ...
written 3 months ago by
Picasa • 290
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