User: Picasa

gravatar for Picasa
Picasa290
Reputation:
290
Status:
Trusted
Location:
Last seen:
4 hours ago
Joined:
1 year, 3 months ago
Email:
p*********@gmail.com

Posts by Picasa

<prev • 204 results • page 1 of 21 • next >
0
votes
6
answers
2.8k
views
6
answers
Answer: A: Error For End Coordinate When Running Cuffdiff
... I have the same error even without using the -s in cuffmerge ... any solution ? ...
written 19 days ago by Picasa290
0
votes
0
answers
102
views
0
answers
Comment: C: Using RNA seq for genome annotation
... Well Maker needs (not mandatory but recommended) transcriptome to infer gene with gene predictor. ...
written 20 days ago by Picasa290
0
votes
0
answers
102
views
0
answers
Comment: C: Using RNA seq for genome annotation
... yes, and i want to provide rna seq evidence ...
written 20 days ago by Picasa290
0
votes
0
answers
102
views
0
answers
Using RNA seq for genome annotation
... Hi, I would like to provide rna seq evidence to Maker for genome annotation. For the transcriptome building, I have done a reference based assembly with STAR+cufflinks but I am not sure if it is the correct way, Do you have some experience with this ? ...
annotation maker written 22 days ago by Picasa290 • updated 21 days ago by Ben40
0
votes
1
answer
2.1k
views
1
answers
Comment: C: Rna-Seq Contaminants Assembling Likelihood
... Hi, I like your explanation, do you have papers that describe this possibility of chimeric contigs ? ...
written 7 weeks ago by Picasa290
0
votes
1
answer
315
views
1
answers
Comment: C: What can I do after my Pacbio genome assembly ?
... Hi Roxane, I was reading this for quiver https://github.com/PacificBiosciences/GenomicConsensus and I would like to know if you have some benchmark using the different algorithm proposed by variantCaller (quiver,arrow,plurality,poa,best). I mean, does it change a lot ? The link above said that ...
written 7 weeks ago by Picasa290
0
votes
0
answers
160
views
0
answers
Comment: C: Best de novo genome assemblies using only Illumina data ??
... Maybe I was not clear with my question. I am not asking which assembler is the best, but I am looking just for papers with different project that have done a de novo genome assembly and had good results. (like the panda genome) http://www.nature.com/nature/journal/v463/n7279/full/nature08696.htm ...
written 12 weeks ago by Picasa290
1
vote
0
answers
160
views
0
answers
Best de novo genome assemblies using only Illumina data ??
... Hi, I am looking for papers of the best de novo assemblies ever done with (and only) Illumina data for differents kind of organisms (bacteria, insect, mammals, plants etc.) By best I mean accurate, not fragmented (high N50), no contaminations, good completeness scores etc. Do you know any ? Than ...
de novo assembly illumina written 12 weeks ago by Picasa290
0
votes
1
answer
315
views
1
answers
Comment: C: What can I do after my Pacbio genome assembly ?
... I have the sequencing coverage information; but why is it important ? ...
written 3 months ago by Picasa290
0
votes
1
answer
315
views
1
answers
Comment: C: What can I do after my Pacbio genome assembly ?
... Hi Roxane and many thanks for your help ! However I don't have .bas/bax.h5 files but only fastq (my raw reads are fastq files) so can I still use pbalign with your command ? I mean, does it recognize fastq ? ...
written 3 months ago by Picasa290

Latest awards to Picasa

Popular Question 4 months ago, created a question with more than 1,000 views. For Best strategy for de novo assembly with illumina reads ?
Popular Question 4 months ago, created a question with more than 1,000 views. For Best strategy for de novo assembly with illumina reads ?
Centurion 8 months ago, created 100 posts.
Student 9 months ago, asked a question with at least 3 up-votes. For Best strategy for de novo assembly with illumina reads ?
Supporter 11 months ago, voted at least 25 times.
Scholar 11 months ago, created an answer that has been accepted. For A: 16S Paired-End Illumina MiSeq Data in Qiime
Rising Star 12 months ago, created 50 posts within first three months of joining.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1494 users visited in the last hour