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486
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Comment: Comment: Gene expression equivalent of polygenic risk score ?
4 weeks ago by Picasa ▴ 700
2
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2
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486
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Gene expression equivalent of polygenic risk score ?
expression gene
4 weeks ago by Picasa ▴ 700
0
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1
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5.9k
views
Finding RNA genes associated with X protein expression in CITE-seq Seurat object
seq cite single cell
updated 7 weeks ago by 89k • written 7 weeks ago by ▴ 700
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0
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2.2k
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Comment: Comment: DGE analysis in Seurat using paired samples per donor ?
3 months ago by Picasa ▴ 700
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1
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1.5k
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Comment: Comment: How to rank genes for GSEA using edgeR-LRT results ?
3 months ago by Picasa ▴ 700
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1
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2.2k
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Comment: Comment: DGE analysis in Seurat using paired samples per donor ?
4 months ago by Picasa ▴ 700
0
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4
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2.2k
views
DGE analysis in Seurat using paired samples per donor ?
paired seurat dge sample
3 months ago by Picasa ▴ 700
0
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2
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608
views
ATAC seq: from peaks to differential analysis ??
MACS2 DESeq2 ATACseq
updated 4 months ago by ★ 1.7k • written 4 months ago by ▴ 700
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0
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2.1k
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Comment: Comment: Best Practices for ATACseq for Performing Differential Accessibility Analysis
4 months ago by Picasa ▴ 700
1
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1
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1.1k
views
How to save the AlphaFold PAE plot as an image in ChimeraX using command line ?
PAE ChimeraX AlphaFold
updated 6 months ago by 4.8k • written 6 months ago by ▴ 700
1
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0
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1.1k
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Comment: Comment: Batch effect
6 months ago by Picasa ▴ 700
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1
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1.4k
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Comment: Comment: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
6 months ago by Picasa ▴ 700
5
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4
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1.4k
views
How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
chimerax alphafold 3
updated 6 months ago by 4.8k • written 6 months ago by ▴ 700
6
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6
replies
1.5k
views
How to rank genes for GSEA using edgeR-LRT results ?
DEG edgeR
updated 3 months ago by ★ 8.5k • written 7 months ago by ▴ 700
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0
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985
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Comment: Comment: Indica rice genome and annotation files
7 months ago by Picasa ▴ 700
0
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0
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629
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Comment: Comment: DEseq2: Advice for model (double interaction ?)
8 months ago by Picasa ▴ 700
1
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2
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629
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DEseq2: Advice for model (double interaction ?)
deseq2 matrix dge
8 months ago by Picasa ▴ 700
0
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0
replies
794
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Comment: Comment: How to visualize shared pathways between ORA (enrichment) results?
11 months ago by Picasa ▴ 700
1
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2
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794
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How to visualize shared pathways between ORA (enrichment) results?
visualization ora pathways enrichment
11 months ago by Picasa ▴ 700
0
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1
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1.7k
views
Comment: Comment: How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seura
11 months ago by Picasa ▴ 700
0
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1
reply
1.7k
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Comment: Comment: How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seura
11 months ago by Picasa ▴ 700
0
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0
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1.7k
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Comment: Comment: How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seura
11 months ago by Picasa ▴ 700
0
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7
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1.7k
views
How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seurat single cell)
seurat
updated 11 months ago by 6.5k • written 11 months ago by ▴ 700
0
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0
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717
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Comment: Comment: Get SYMBOL using mapIds with T2T genome ?
16 months ago by Picasa ▴ 700
0
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2
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717
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Get SYMBOL using mapIds with T2T genome ?
t2t
16 months ago by Picasa ▴ 700
0
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1
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2.4k
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Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
16 months ago by Picasa ▴ 700
0
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1
reply
2.4k
views
Answer: Answer: Speed up Seurat FindClusters execution?
16 months ago by Picasa ▴ 700
0
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1
reply
1.0k
views
How to compute gsea overlap of gene set with R
gsea overlap
updated 17 months ago by ▴ 100 • written 17 months ago by ▴ 700
1
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0
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7.8k
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Comment: Comment: What is the best practice of scRNA workflow for multiple patients and samples us
17 months ago by Picasa ▴ 700
0
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1
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3.8k
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Comment: Comment: Harmony integration group.by.var parameter
17 months ago by Picasa ▴ 700
0
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1
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18k
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Comment: Comment: Merging multiple samples in Seurat
17 months ago by Picasa ▴ 700
0
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0
replies
3.8k
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Comment: Comment: Harmony integration group.by.var parameter
17 months ago by Picasa ▴ 700
0
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1
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3.8k
views
Comment: Comment: Harmony integration group.by.var parameter
17 months ago by Picasa ▴ 700
2
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6
replies
3.8k
views
Harmony integration group.by.var parameter
single-cell harmony
updated 17 months ago by ★ 19k • written 17 months ago by ▴ 700
0
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1
reply
568
views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization rnaseq
updated 19 months ago by 45k • written 19 months ago by ▴ 700
1
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1
reply
635
views
Seeking for edgeR TMM Normalization calcul example
tmm edgeR deseq2
updated 19 months ago by ★ 19k • written 19 months ago by ▴ 700
0
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0
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3.0k
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Comment: Comment: Filter out doublet and Clustering
20 months ago by Picasa ▴ 700
0
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1
reply
995
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Comment: Comment: GO enrichment plot with dotplot strange axis
21 months ago by Picasa ▴ 700
0
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3
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995
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GO enrichment plot with dotplot strange axis
enrichment go plot
updated 21 months ago by ★ 3.1k • written 21 months ago by ▴ 700
0
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0
replies
62k
views
Comment: Comment: ClusterProfiler : What is GeneRatio and BgRatio?
21 months ago by Picasa ▴ 700
0
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1
reply
848
views
Seurat: How to get all genes name of a cell ?
seurat
updated 2.4 years ago by ★ 1.9k • written 2.4 years ago by ▴ 700
0
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0
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13k
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Comment: Comment: DESeq2 modelling and Wald's test
2.4 years ago by Picasa ▴ 700
0
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1
reply
1.2k
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DESeq2 : parameter of Negative Binomial model in a context of gene expression
rnaseq DESeq2 NB
2.5 years ago by Picasa ▴ 700
2
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11
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7.8k
views
7 follow
PCA on VCF
pca vcf
updated 3.3 years ago by 23k • written 9.6 years ago by ▴ 700
0
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6
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5.2k
views
Merging vcf files ?
vcf
updated 3.4 years ago by • 0 • written 9.4 years ago by ▴ 700
0
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1
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1.3k
views
Comment: Comment: Alignment of genomes and get statistics about alignment
4.1 years ago by Picasa ▴ 700
0
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3
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1.3k
views
Alignment of genomes and get statistics about alignment
genome
updated 4.1 years ago by ▴ 570 • written 4.1 years ago by ▴ 700
2
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2
replies
1.3k
views
Primers and multimapping ?
primer3
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 700
2
votes
1
reply
1.3k
views
R package for structural variation representation ?
structural variation mummer
updated 4.2 years ago by 4.2k • written 4.2 years ago by ▴ 700
0
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0
replies
6.7k
views
Comment: Comment: repeatmasker species setting
4.2 years ago by Picasa ▴ 700
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