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3.4k
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Finding RNA genes associated with X protein expression in CITE-seq Seurat object
seq cite single cell
updated 3 days ago by 89k • written 4 days ago by ▴ 690
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0
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2.1k
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Comment: Comment: DGE analysis in Seurat using paired samples per donor ?
9 weeks ago by Picasa ▴ 690
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1
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1.3k
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Comment: Comment: How to rank genes for GSEA using edgeR-LRT results ?
10 weeks ago by Picasa ▴ 690
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1
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2.1k
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Comment: Comment: DGE analysis in Seurat using paired samples per donor ?
11 weeks ago by Picasa ▴ 690
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4
replies
2.1k
views
DGE analysis in Seurat using paired samples per donor ?
paired seurat dge sample
9 weeks ago by Picasa ▴ 690
0
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2
replies
522
views
ATAC seq: from peaks to differential analysis ??
MACS2 DESeq2 ATACseq
updated 3 months ago by ★ 1.6k • written 3 months ago by ▴ 690
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0
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1.8k
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Comment: Comment: Best Practices for ATACseq for Performing Differential Accessibility Analysis
3 months ago by Picasa ▴ 690
1
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1
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890
views
How to save the AlphaFold PAE plot as an image in ChimeraX using command line ?
PAE ChimeraX AlphaFold
updated 5 months ago by 4.8k • written 5 months ago by ▴ 690
1
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0
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965
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Comment: Comment: Batch effect
5 months ago by Picasa ▴ 690
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1
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1.1k
views
Comment: Comment: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
5 months ago by Picasa ▴ 690
5
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4
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1.1k
views
How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
chimerax alphafold 3
updated 5 months ago by 4.8k • written 5 months ago by ▴ 690
5
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6
replies
1.3k
views
How to rank genes for GSEA using edgeR-LRT results ?
DEG edgeR
updated 10 weeks ago by ★ 8.3k • written 6 months ago by ▴ 690
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0
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861
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Comment: Comment: Indica rice genome and annotation files
6 months ago by Picasa ▴ 690
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0
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563
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Comment: Comment: DEseq2: Advice for model (double interaction ?)
6 months ago by Picasa ▴ 690
1
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2
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563
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DEseq2: Advice for model (double interaction ?)
deseq2 matrix dge
6 months ago by Picasa ▴ 690
0
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0
replies
715
views
Comment: Comment: How to visualize shared pathways between ORA (enrichment) results?
9 months ago by Picasa ▴ 690
1
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2
replies
715
views
How to visualize shared pathways between ORA (enrichment) results?
visualization ora pathways enrichment
9 months ago by Picasa ▴ 690
0
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1
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1.5k
views
Comment: Comment: How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seura
10 months ago by Picasa ▴ 690
0
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1
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1.5k
views
Comment: Comment: How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seura
10 months ago by Picasa ▴ 690
0
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0
replies
1.5k
views
Comment: Comment: How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seura
10 months ago by Picasa ▴ 690
0
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7
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1.5k
views
How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seurat single cell)
seurat
updated 10 months ago by 6.5k • written 10 months ago by ▴ 690
0
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0
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634
views
Comment: Comment: Get SYMBOL using mapIds with T2T genome ?
14 months ago by Picasa ▴ 690
0
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2
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634
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Get SYMBOL using mapIds with T2T genome ?
t2t
14 months ago by Picasa ▴ 690
0
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1
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2.2k
views
Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
14 months ago by Picasa ▴ 690
0
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1
reply
2.2k
views
Answer: Answer: Speed up Seurat FindClusters execution?
15 months ago by Picasa ▴ 690
0
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1
reply
912
views
How to compute gsea overlap of gene set with R
gsea overlap
updated 15 months ago by ▴ 100 • written 15 months ago by ▴ 690
1
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0
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7.5k
views
Comment: Comment: What is the best practice of scRNA workflow for multiple patients and samples us
16 months ago by Picasa ▴ 690
0
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1
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3.4k
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Comment: Comment: Harmony integration group.by.var parameter
16 months ago by Picasa ▴ 690
0
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1
reply
17k
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Comment: Comment: Merging multiple samples in Seurat
16 months ago by Picasa ▴ 690
0
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0
replies
3.4k
views
Comment: Comment: Harmony integration group.by.var parameter
16 months ago by Picasa ▴ 690
0
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1
reply
3.4k
views
Comment: Comment: Harmony integration group.by.var parameter
16 months ago by Picasa ▴ 690
2
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6
replies
3.4k
views
Harmony integration group.by.var parameter
single-cell harmony
updated 16 months ago by ★ 19k • written 16 months ago by ▴ 690
0
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1
reply
534
views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization rnaseq
updated 18 months ago by 45k • written 18 months ago by ▴ 690
1
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1
reply
580
views
Seeking for edgeR TMM Normalization calcul example
tmm edgeR deseq2
updated 18 months ago by ★ 19k • written 18 months ago by ▴ 690
0
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0
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2.8k
views
Comment: Comment: Filter out doublet and Clustering
18 months ago by Picasa ▴ 690
0
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1
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905
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Comment: Comment: GO enrichment plot with dotplot strange axis
19 months ago by Picasa ▴ 690
0
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3
replies
905
views
GO enrichment plot with dotplot strange axis
enrichment go plot
updated 19 months ago by ★ 3.1k • written 19 months ago by ▴ 690
0
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0
replies
60k
views
Comment: Comment: ClusterProfiler : What is GeneRatio and BgRatio?
19 months ago by Picasa ▴ 690
0
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1
reply
809
views
Seurat: How to get all genes name of a cell ?
seurat
updated 2.3 years ago by ★ 1.9k • written 2.3 years ago by ▴ 690
0
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0
replies
12k
views
Comment: Comment: DESeq2 modelling and Wald's test
2.3 years ago by Picasa ▴ 690
0
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1
reply
1.1k
views
DESeq2 : parameter of Negative Binomial model in a context of gene expression
rnaseq DESeq2 NB
2.3 years ago by Picasa ▴ 690
2
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11
replies
7.6k
views
7 follow
PCA on VCF
pca vcf
updated 3.1 years ago by 23k • written 9.5 years ago by ▴ 690
0
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6
replies
5.1k
views
Merging vcf files ?
vcf
updated 3.3 years ago by • 0 • written 9.2 years ago by ▴ 690
0
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1
reply
1.3k
views
Comment: Comment: Alignment of genomes and get statistics about alignment
3.9 years ago by Picasa ▴ 690
0
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3
replies
1.3k
views
Alignment of genomes and get statistics about alignment
genome
updated 3.9 years ago by ▴ 570 • written 3.9 years ago by ▴ 690
2
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2
replies
1.2k
views
Primers and multimapping ?
primer3
updated 4.0 years ago by 89k • written 4.0 years ago by ▴ 690
2
votes
1
reply
1.2k
views
R package for structural variation representation ?
structural variation mummer
updated 4.0 years ago by 4.2k • written 4.0 years ago by ▴ 690
0
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0
replies
6.5k
views
Comment: Comment: repeatmasker species setting
4.1 years ago by Picasa ▴ 690
0
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1
reply
10k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
4.2 years ago by Picasa ▴ 690
0
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1
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10k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
4.2 years ago by Picasa ▴ 690
358 results • Page 1 of 8
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