User: kuckunniwid

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kuckunniwid580
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Posts by kuckunniwid

<prev • 134 results • page 1 of 14 • next >
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Comment: C: Whole genome sequencing or whole exome sequencing- which is better and why?
... As discussed above, there is no single answer =( It can be 1) finding structural variants in cancer - and TPS sucks here, 2) finding SNVs and CNVs - then clinics usually use custom panels of 100-800 cancer driver/supressor genes, 3) tracking of potential relapse using ultra-deep liquid biopsy - the ...
written 16 hours ago by kuckunniwid580
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Comment: C: Whole genome sequencing or whole exome sequencing- which is better and why?
... ah, yes, from this point of view - sure. however honestly I'd strongly prefer to work with 10.000x panel-based liquid biopsy rather than 10.000x WGS - I honestly don't know how will I operate with the file of such size just to extract 100 important positions. ...
written 16 hours ago by kuckunniwid580
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Comment: C: Whole genome sequencing or whole exome sequencing- which is better and why?
... I'd add - if the goal is the detection of something small (such as tumor sub-clonal SNVs) - ultra-deep WES/Targeted Panel Sequencing of important genes are way better than WGS. ...
written 16 hours ago by kuckunniwid580
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Comment: C: WARN: Killing pending tasks (3) Error executing process > 'RunQC (S3_test)' in A
... It is actually different error ...
written 18 hours ago by kuckunniwid580
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Comment: C: How to Interpret FDR-TPR (or FDP-TPR) Curves
... It is not a False Discovery Rate, it is False Discovery Proportion - similar but different concept ...
written 1 day ago by kuckunniwid580
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Comment: C: WARN: Killing pending tasks (3) Error executing process > 'RunQC (S3_test)' in A
... > Where are the errors? `Error executing process > 'RunQC (S3_test)'` - I think here ...
written 1 day ago by kuckunniwid580
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Answer: C: DNAcopy plot error
... "1) "Error in plot.new() : figure margins too large" This error indicates that the margins of the particular plot are very large while the region allocated for the plot is too small. You can solve this problem by increasing the size of the plots pane. " - via https://support.rstudio.com/hc/en-us/ar ...
written 4 days ago by kuckunniwid580
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Comment: C: raise PipelineException('pipeline failed') pypeliner.scheduler.PipelineException
... I think you need to ask on stackoverflow (today I've learnt) ...
written 4 days ago by kuckunniwid580
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Comment: C: Supporting a tool written in R
... > In general, there's no guarantee of backwards compatibility in R (or > python for that matter). I had no bad experience with python in this sense - I use quite basic functions/packages so the high-level updates usually don't disrupt the work. > Requiring users to upgrade R to some mode ...
written 4 days ago by kuckunniwid580
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Comment: C: Supporting a tool written in R
... wanted to remove the question since it does not belong - did not work =( thanks, yes, the package is solving a bioinformatics problem, but the question still does not belong to biostars, I agree ...
written 4 days ago by kuckunniwid580

Latest awards to kuckunniwid

Supporter 8 days ago, voted at least 25 times.
Centurion 13 days ago, created 100 posts.
Scholar 28 days ago, created an answer that has been accepted. For A: Inconsistent Coverage on X chromosome between genders
Teacher 28 days ago, created an answer with at least 3 up-votes. For A: Inconsistent Coverage on X chromosome between genders
Appreciated 4 weeks ago, created a post with more than 5 votes. For ClinCNV: CNV detection from short reads
Scholar 5 weeks ago, created an answer that has been accepted. For A: Inconsistent Coverage on X chromosome between genders
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Inconsistent Coverage on X chromosome between genders
Student 10 weeks ago, asked a question with at least 3 up-votes. For Ploidy Correction In NGS cancer data (human)
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Customised piechart for 2 variables
Scholar 24 months ago, created an answer that has been accepted. For A: Inconsistent Coverage on X chromosome between genders
Teacher 24 months ago, created an answer with at least 3 up-votes. For A: Inconsistent Coverage on X chromosome between genders

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