User: caggtaagtat

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caggtaagtat240
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Posts by caggtaagtat

<prev • 111 results • page 1 of 12 • next >
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Comment: C: What server do you use?
... Yes they are great and helped me a lot! They also arranged the collective complaint, to change restictions for medical institutions to the HPC. ...
written 14 hours ago by caggtaagtat240
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Comment: C: What server do you use?
... Ok definitly staying with the university HPC then :) ...
written 14 hours ago by caggtaagtat240
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Comment: C: What server do you use?
... Ok thank you, I will wait and see if the situation maybe improves by itself any time soon and then talk with the HPC team of my university. Since you mention it, it can be, that I maybe have lower priority, since i was told by the IT admins, that people of the medical department of the university g ...
written 17 hours ago by caggtaagtat240
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Comment: C: What server do you use?
... Ok, its probably not very wise to switch then, just for occasional faster job execution ...
written 20 hours ago by caggtaagtat240
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Comment: C: What server do you use?
... The clustere uses PBSPro. I'm no informatician, but when I worked at another universities HPC, I didn't have to execute scripts with qsub, but could also just login to a free node and execute my scripts directly in the terminal, if that makes sense. ...
written 20 hours ago by caggtaagtat240
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Comment: C: What server do you use?
... Maybe I could talk to the IT team, if it would be generally possible. It's probably more practical to stay at the universities HPC. The HPC team wrote a mail a few weeks ago, that the cluster is full because some users asked for more resources they needed. I guess this could also still come from th ...
written 20 hours ago by caggtaagtat240
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Comment: C: What server do you use?
... It's general long waiting times, due to high demand, I guess. These delays happen frequently with jobs, which need 1 cpu and 2GB RAM. ...
written 1 day ago by caggtaagtat240
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Forum: What server do you use?
... Hi there, the cluster at my university often makes me wait for days until my jobs get from the queue to execution. I was therefore wondering, if you have experiences with AWS or other clouds for scientific purposes and if it's a financially reasonable alternative. I dont need more than 10TB storag ...
hpc forum aws written 1 day ago by caggtaagtat240
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Comment: C: How to get ungapped single-end reads from the STAR output bam file?
... Thank you very much! This is a very interesting tool and it seems to work. Edit: It definitly worked right away ...
written 2 days ago by caggtaagtat240
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Comment: C: Filtering out the spliced reads from bam file.
... Apparently, the `maxdellen` parameter doesn't work anymore ...
written 2 days ago by caggtaagtat240

Latest awards to caggtaagtat

Centurion 2 days ago, created 100 posts.
Good Answer 27 days ago, created an answer that was upvoted at least 5 times. For A: what do the headers of the rMATS output files mean?
Good Answer 27 days ago, created an answer that was upvoted at least 5 times. For A: what do the headers of the rMATS output files mean?
Scholar 8 weeks ago, created an answer that has been accepted. For A: Only 1% of reads are used as "input reads" in STAR
Supporter 4 months ago, voted at least 25 times.
Appreciated 4 months ago, created a post with more than 5 votes. For A: what do the headers of the rMATS output files mean?
Appreciated 5 months ago, created a post with more than 5 votes. For A: what do the headers of the rMATS output files mean?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: what do the headers of the rMATS output files mean?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: what do the headers of the rMATS output files mean?

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