User: Fereshteh

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Fereshteh2.9k
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I am learning everyday

Posts by Fereshteh

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Comment: C: what is the input for cuffmerge???
... Sorry, I don't have access to Linux or mac I then can't remember what I had done 2 years ago but the instruction of cuffmerge was somehow straightforward as I remember. ...
written 3 days ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Thank you, you prevented me to do whole of work wrongly. Actually I am just doing as mentioned in a paper so " To identify differentially expressed genes (DEGs) in each dataset, statistical analyses were performed, which reported statistically significant (adjusted p-value < 0.01 and f ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Thank you, with this head of my data ID adj.P.Val P.Value logFC Gene.symbol 201289_at 6.95E-11 1.27E-15 -5.94112291 CYR61 202768_at 2.43E-09 1.01E-13 -6.95512411 FOSB 209189_at 2.43E-09 1.33E-13 -5.22397202 FOS 201694_s_at 4.67E-09 3.42E-13 -4.0543598 EGR1 210764_s_at 5.41E- ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Sorry, because I want to extract genes with `Fold Change > 2` then I must extract genes with `logFC > 1`. I hope I am not wrong ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Thanks a lot both of you Kevin and cpad0112 for your time and considerations. ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Thank you, I am working with seven independent microarray GSE series with limma top tables in my hand, now I am going to filter first by adj.P.Val then by fold change. ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Thank you, you are saving me from re-performing because today morning I had completed filtering based on both ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Sorry, do you mean I should first filter for statistical significance and then FC or vice versa instead of performing both at the same time???? ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Thank you, in Iran we don't celebrate Christmas!! our holiday is in March (Iranian New Year) but I know that nowadays there is holiday most parts of the world. Hope you and all health and happiness in 2018. ...
written 7 weeks ago by Fereshteh2.9k
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Comment: C: Extracting differentially expressed genes in R
... Thank you so much, Always helpful quickly. happy new year to you and biostars. ...
written 7 weeks ago by Fereshteh2.9k

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