User: Fereshteh

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Fereshteh2.7k
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I am learning everyday

Posts by Fereshteh

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Comment: C: extracting a file from a bigger file
... exactly your second assumption is correct that Ram's solution game me this https://ibb.co/ffiPUv thank you both. when I merge first for TFs and then for genes one by one I got different interactions ...
written 8 days ago by Fereshteh2.7k
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Comment: C: extracting a file from a bigger file
... exactly this is my mean, thank you for your kindly efforts, I will try your solutions I want to extract intractions from my bigger file that contains common genes and TF existed in my small file. ...
written 8 days ago by Fereshteh2.7k
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Comment: C: extracting a file from a bigger file
... yes there are common TFs between genes too ...
written 8 days ago by Fereshteh2.7k
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Comment: C: extracting a file from a bigger file
... but there is common TFs and genes I checked with venn diagram :( ...
written 8 days ago by Fereshteh2.7k
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extracting a file from a bigger file
... Hi, I have two files TF gene interaction AATF BAK1 Unknown AATF BAX Repression AATF MYC Activation And: TF gene KAT5 KLRC4-KLRK1 EGF ABCB6 ETS1 CDKN2A how I can extract the small file from the bigger one that contains interaction types??? I tried ...
software error R written 8 days ago by Fereshteh2.7k • updated 8 days ago by Ram12k
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Comment: C: Programming Language In Bioinformatics
... I am absolutely zero in python, I want to learn then I installed Pycharm, now you think I better start with a book like " `Learning to Program Using Python by Cody Jackson`" or suggested weblogs in biostars-googling???? Thank you ...
written 9 days ago by Fereshteh2.7k
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Comment: C: gene expression data
... http://www.chibi.ubc.ca/Gemma/home.html;jsessionid=B166BB606049525E0A714D9D8F1EC4FF contains many curated and normalized expression data sets ...
written 12 days ago by Fereshteh2.7k
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Answer: C: RNA-seq visualization tools
... http://wiki.c2b2.columbia.edu/workbench/index.php/Home A simple and good workbench that I have already used to draw volcano plot, but has much more options simply download, install, upload list of differentially expressed genes, determine control and treatment samples, finally by t-test you woul ...
written 12 days ago by Fereshteh2.7k
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Comment: C: How to apply for a job
... Thanks a lot, very useful post ...
written 17 days ago by Fereshteh2.7k
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Comment: C: how can we show in Cytoscape the types of interactions among gene-TF
... https://www.biostars.org/p/192885/ ...
written 17 days ago by Fereshteh2.7k

Latest awards to Fereshteh

Popular Question 5 days ago, created a question with more than 1,000 views. For converting txt to bed
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