Moderator: Sukhdeep Singh

gravatar for Sukhdeep Singh
Sukhdeep Singh8.8k
Reputation:
8,770
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Trusted
Location:
Netherlands
Website:
http://www.biotec.tu-d...
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Google Scholar Page
Last seen:
4 days, 17 hours ago
Joined:
6 years, 11 months ago
Email:
s****************@gmail.com

Bioinformatics Scientist at HZPC

  

Posts by Sukhdeep Singh

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Comment: C: Any comparisons of read length for variant calling?
... Thanks Brian for the information. ...
written 4 weeks ago by Sukhdeep Singh8.8k
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Comment: C: Any comparisons of read length for variant calling?
... Very informative. Thanks Harold ...
written 4 weeks ago by Sukhdeep Singh8.8k
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Any comparisons of read length for variant calling?
... Are there any studies of comparing lengths of 100, 150 and 250 bp (paired end) for variant calling (SNP detection). I was wondering how much we gain (true positive, false negatives) in we sequence a longer read by Ilumina (not PacBio). ...
assembly next-gen variant snp gatk written 4 weeks ago by Sukhdeep Singh8.8k • updated 4 weeks ago by Brian Bushnell11k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... [FYI] Only available from v1.3, I couldn't find that parameter in my version https://github.com/samtools/samtools/issues/374 ...
written 4 months ago by Sukhdeep Singh8.8k
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Many congratulations on publishing the book, yet another feat you (other contributors) have achieved after the Biostars.org itself. I have advertised book to many people already who ask me on a daily basis how to start in Bioinformatics, clear, concise and to the point. Would love to contribute to t ...
written 4 months ago by Sukhdeep Singh8.8k
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Comment: C: Learning Python: list of resources
... Also, good collection here [What-is-the-best-online-resource-to-learn-Python][1] [1]: https://www.quora.com/What-is-the-best-online-resource-to-learn-Python ...
written 7 months ago by Sukhdeep Singh8.8k
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Comment: C: Establishing a Core Bioinformatics Facility
... "kicking BAM files down to the wet lab folks" hahaha xD ...
written 7 months ago by Sukhdeep Singh8.8k
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Comment: C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
... No, I don't think so. ...
written 9 months ago by Sukhdeep Singh8.8k
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Comment: C: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
... Hi, use [bedClip][1] (link is from my old blog post). [1]: http://biofeed.tumblr.com/post/16758640444/ngschip-seq-bedclip-to-clip-out-off-end ...
written 10 months ago by Sukhdeep Singh8.8k
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Comment: C: InsideDNA: Runinng Bismark pipeline for analysis of sodium bisulfite-treated DNA
... All the posts from the OP are created in a similar fashion. Either someone edits all the posts or suspend the user? ...
written 10 months ago by Sukhdeep Singh8.8k

Latest awards to Sukhdeep Singh

Appreciated 19 days ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Bye Bye Bioinformatics : Another Small Result Of Mis-Conclusions And Results!!
Great Question 8 weeks ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Popular Question 10 weeks ago, created a question with more than 1,000 views. For How Not To Be A Bioinformatician
Good Answer 12 weeks ago, created an answer that was upvoted at least 5 times. For A: Bowtie2 Ubuntu Installation
Gold Standard 3 months ago, created a post with more than 25 bookmarks. For A: How To Filter Mapped Reads With Samtools
Appreciated 3 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
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Appreciated 6 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
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