Moderator: Sukhdeep Singh

gravatar for Sukhdeep Singh
Sukhdeep Singh9.8k
Reputation:
9,820
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Location:
Netherlands
Website:
http://www.biotec.tu-d...
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Google Scholar Page
Last seen:
3 weeks, 1 day ago
Joined:
9 years, 1 month ago
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s****************@gmail.com

Bioinformatics Scientist at HZPC

  

Posts by Sukhdeep Singh

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Comment: C: Is Biostar Killing The Bioinformatics Core?
... I cited some in my thesis :) ...
written 8 weeks ago by Sukhdeep Singh9.8k
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9
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9
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Comment: C: Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
... hahahah and I am having a laugh after 7 years :D ...
written 4 months ago by Sukhdeep Singh9.8k
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Answer: A: Is There Is Tool For Variable Tandem Repeats Finding?
... Also, check out [MISA][1] Beier S, Thiel T, Münch T, Scholz U, Mascher M (2017) MISA-web: a web server for microsatellite prediction. Bioinformatics 33 2583–2585. dx.doi.org/10.1093/bioinformatics/btx198 [1]: https://webblast.ipk-gatersleben.de/misa/ ...
written 5 months ago by Sukhdeep Singh9.8k
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Comment: C: Correlating ChIP-Seq peaks with isoform level expression
... Yes, it also depends on what cell type and organism you are talking about but for most systems, H3K4me3 mark directly correlates with gene expression. ...
written 2.1 years ago by Sukhdeep Singh9.8k
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Comment: C: Any comparisons of read length for variant calling?
... Thanks Brian for the information. ...
written 2.2 years ago by Sukhdeep Singh9.8k
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Comment: C: Any comparisons of read length for variant calling?
... Very informative. Thanks Harold ...
written 2.2 years ago by Sukhdeep Singh9.8k
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Any comparisons of read length for variant calling?
... Are there any studies of comparing lengths of 100, 150 and 250 bp (paired end) for variant calling (SNP detection). I was wondering how much we gain (true positive, false negatives) in we sequence a longer read by Ilumina (not PacBio). ...
assembly next-gen variant snp gatk written 2.2 years ago by Sukhdeep Singh9.8k • updated 2.2 years ago by Brian Bushnell16k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... [FYI] Only available from v1.3, I couldn't find that parameter in my version https://github.com/samtools/samtools/issues/374 ...
written 2.5 years ago by Sukhdeep Singh9.8k
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Many congratulations on publishing the book, yet another feat you (other contributors) have achieved after the Biostars.org itself. I have advertised book to many people already who ask me on a daily basis how to start in Bioinformatics, clear, concise and to the point. Would love to contribute to t ...
written 2.5 years ago by Sukhdeep Singh9.8k
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Comment: C: Learning Python: list of resources
... Also, good collection here [What-is-the-best-online-resource-to-learn-Python][1] [1]: https://www.quora.com/What-is-the-best-online-resource-to-learn-Python ...
written 2.7 years ago by Sukhdeep Singh9.8k

Latest awards to Sukhdeep Singh

Great Question 28 days ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: Is Biostar Killing The Bioinformatics Core?
Scholar 5 months ago, created an answer that has been accepted. For A: Rename entries of file_1 using their corresponding ids in file_2
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Popular Question 7 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Scholar 12 months ago, created an answer that has been accepted. For A: Rename entries of file_1 using their corresponding ids in file_2
Cylon 12 months ago, received 1,000 up votes.
Good Answer 12 months ago, created an answer that was upvoted at least 5 times. For A: Is Biostar Killing The Bioinformatics Core?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Popular Question 15 months ago, created a question with more than 1,000 views. For How to know if samtools sort exited normally [left temporary files behind]
Popular Question 15 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Appreciated 17 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Appreciated 20 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Prophet 21 months ago, created a post with more than 20 followers. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Popular Question 22 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Great Question 22 months ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Popular Question 22 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Appreciated 23 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Good Answer 2.0 years ago, created an answer that was upvoted at least 5 times. For A: Is Biostar Killing The Bioinformatics Core?
Good Answer 2.0 years ago, created an answer that was upvoted at least 5 times. For A: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Popular Question 2.0 years ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Good Question 2.0 years ago, asked a question that was upvoted at least 5 times. For Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]

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