Moderator: Sukhdeep Singh

gravatar for Sukhdeep Singh
Sukhdeep Singh8.9k
Reputation:
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Location:
Netherlands
Website:
http://www.biotec.tu-d...
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Google Scholar Page
Last seen:
3 days, 19 hours ago
Joined:
7 years, 1 month ago
Email:
s****************@gmail.com

Bioinformatics Scientist at HZPC

  

Posts by Sukhdeep Singh

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Comment: C: Correlating ChIP-Seq peaks with isoform level expression
... Yes, it also depends on what cell type and organism you are talking about but for most systems, H3K4me3 mark directly correlates with gene expression. ...
written 6 weeks ago by Sukhdeep Singh8.9k
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Comment: C: Any comparisons of read length for variant calling?
... Thanks Brian for the information. ...
written 12 weeks ago by Sukhdeep Singh8.9k
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Comment: C: Any comparisons of read length for variant calling?
... Very informative. Thanks Harold ...
written 12 weeks ago by Sukhdeep Singh8.9k
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Any comparisons of read length for variant calling?
... Are there any studies of comparing lengths of 100, 150 and 250 bp (paired end) for variant calling (SNP detection). I was wondering how much we gain (true positive, false negatives) in we sequence a longer read by Ilumina (not PacBio). ...
assembly next-gen variant snp gatk written 12 weeks ago by Sukhdeep Singh8.9k • updated 12 weeks ago by Brian Bushnell12k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... [FYI] Only available from v1.3, I couldn't find that parameter in my version https://github.com/samtools/samtools/issues/374 ...
written 6 months ago by Sukhdeep Singh8.9k
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Many congratulations on publishing the book, yet another feat you (other contributors) have achieved after the Biostars.org itself. I have advertised book to many people already who ask me on a daily basis how to start in Bioinformatics, clear, concise and to the point. Would love to contribute to t ...
written 6 months ago by Sukhdeep Singh8.9k
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Comment: C: Learning Python: list of resources
... Also, good collection here [What-is-the-best-online-resource-to-learn-Python][1] [1]: https://www.quora.com/What-is-the-best-online-resource-to-learn-Python ...
written 8 months ago by Sukhdeep Singh8.9k
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Comment: C: Establishing a Core Bioinformatics Facility
... "kicking BAM files down to the wet lab folks" hahaha xD ...
written 9 months ago by Sukhdeep Singh8.9k
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Comment: C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
... No, I don't think so. ...
written 10 months ago by Sukhdeep Singh8.9k
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Comment: C: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
... Hi, use [bedClip][1] (link is from my old blog post). [1]: http://biofeed.tumblr.com/post/16758640444/ngschip-seq-bedclip-to-clip-out-off-end ...
written 12 months ago by Sukhdeep Singh8.9k

Latest awards to Sukhdeep Singh

Good Question 6 days ago, asked a question that was upvoted at least 5 times. For Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
Great Question 28 days ago, created a question with more than 5,000 views. For Tophat Error : Oserror: [Errno 2] No Such File Or Directory
Librarian 5 weeks ago, created a post with more than 10 bookmarks. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Appreciated 10 weeks ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Popular Question 3 months ago, created a question with more than 1,000 views. For Bye Bye Bioinformatics : Another Small Result Of Mis-Conclusions And Results!!
Great Question 3 months ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Popular Question 4 months ago, created a question with more than 1,000 views. For How Not To Be A Bioinformatician
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Bowtie2 Ubuntu Installation
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