Moderator: Sukhdeep Singh

gravatar for Sukhdeep Singh
Sukhdeep Singh8.7k
Reputation:
8,740
Status:
Trusted
Location:
Germany
Website:
http://www.biotec.tu-d...
Scholar ID:
Google Scholar Page
Last seen:
5 hours ago
Joined:
6 years, 9 months ago
Email:
s****************@gmail.com

Bioinformatics Scientist at SYBOSS Project (Systems Biology of Stem Cells and Reprogramming) with current focus on computational epigenetics, investigating histone modifications and understanding transcriptional machinery in mouse ESCs and NSCs.

I have been developing computational pipelines to handle and analyse the plethora of NGS datasets(ChIP-Seq, RNA-Seq) generated in-house and collaborating labs utilizing High-Performance computing.

 

Posts by Sukhdeep Singh

<prev • 768 results • page 1 of 77 • next >
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... [FYI] Only available from v1.3, I couldn't find that parameter in my version https://github.com/samtools/samtools/issues/374 ...
written 11 weeks ago by Sukhdeep Singh8.7k
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14
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Many congratulations on publishing the book, yet another feat you (other contributors) have achieved after the Biostars.org itself. I have advertised book to many people already who ask me on a daily basis how to start in Bioinformatics, clear, concise and to the point. Would love to contribute to t ...
written 11 weeks ago by Sukhdeep Singh8.7k
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7
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Comment: C: Learning Python: list of resources
... Also, good collection here [What-is-the-best-online-resource-to-learn-Python][1] [1]: https://www.quora.com/What-is-the-best-online-resource-to-learn-Python ...
written 5 months ago by Sukhdeep Singh8.7k
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5
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5
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Comment: C: Establishing a Core Bioinformatics Facility
... "kicking BAM files down to the wet lab folks" hahaha xD ...
written 5 months ago by Sukhdeep Singh8.7k
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15
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15
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Comment: C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
... No, I don't think so. ...
written 7 months ago by Sukhdeep Singh8.7k
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Comment: C: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
... Hi, use [bedClip][1] (link is from my old blog post). [1]: http://biofeed.tumblr.com/post/16758640444/ngschip-seq-bedclip-to-clip-out-off-end ...
written 8 months ago by Sukhdeep Singh8.7k
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684
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Comment: C: InsideDNA: Runinng Bismark pipeline for analysis of sodium bisulfite-treated DNA
... All the posts from the OP are created in a similar fashion. Either someone edits all the posts or suspend the user? ...
written 8 months ago by Sukhdeep Singh8.7k
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Comment: C: R org.Hs.eg.db matching ensembl gene ids with gene symbol
... Great, good luck then! ...
written 10 months ago by Sukhdeep Singh8.7k
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Comment: C: R org.Hs.eg.db matching ensembl gene ids with gene symbol
... As I said, the above command should work, unless you have a copy-paste error, or the object `res` has some issue. Check `row.names(res)`, what does it outputs! ...
written 10 months ago by Sukhdeep Singh8.7k
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Comment: C: R org.Hs.eg.db matching ensembl gene ids with gene symbol
... Command should work, I see you have some unidentified symbol in the command you pasted. Try to write it and see if it works! ...
written 10 months ago by Sukhdeep Singh8.7k

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Commentator 12 days ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Popular Question 12 days ago, created a question with more than 1,000 views. For How Not To Be A Bioinformatician
Good Answer 29 days ago, created an answer that was upvoted at least 5 times. For A: Bowtie2 Ubuntu Installation
Gold Standard 4 weeks ago, created a post with more than 25 bookmarks. For A: How To Filter Mapped Reads With Samtools
Appreciated 6 weeks ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
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Appreciated 4 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
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