Moderator: Sukhdeep Singh

gravatar for Sukhdeep Singh
Sukhdeep Singh9.9k
Reputation:
9,920
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Trusted
Location:
Netherlands
Website:
http://sukhdeepsingh.eu/
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Google Scholar Page
Last seen:
3 weeks, 6 days ago
Joined:
9 years, 5 months ago
Email:
s****************@gmail.com

Posts by Sukhdeep Singh

<prev • 774 results • page 1 of 78 • next >
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Comment: C: Is Biostar Killing The Bioinformatics Core?
... I cited some in my thesis :) ...
written 6 months ago by Sukhdeep Singh9.9k
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9
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9
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Comment: C: Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
... hahahah and I am having a laugh after 7 years :D ...
written 9 months ago by Sukhdeep Singh9.9k
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Answer: A: Is There Is Tool For Variable Tandem Repeats Finding?
... Also, check out [MISA][1] Beier S, Thiel T, Münch T, Scholz U, Mascher M (2017) MISA-web: a web server for microsatellite prediction. Bioinformatics 33 2583–2585. dx.doi.org/10.1093/bioinformatics/btx198 [1]: https://webblast.ipk-gatersleben.de/misa/ ...
written 9 months ago by Sukhdeep Singh9.9k
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Comment: C: Correlating ChIP-Seq peaks with isoform level expression
... Yes, it also depends on what cell type and organism you are talking about but for most systems, H3K4me3 mark directly correlates with gene expression. ...
written 2.5 years ago by Sukhdeep Singh9.9k
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Comment: C: Any comparisons of read length for variant calling?
... Thanks Brian for the information. ...
written 2.6 years ago by Sukhdeep Singh9.9k
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Comment: C: Any comparisons of read length for variant calling?
... Very informative. Thanks Harold ...
written 2.6 years ago by Sukhdeep Singh9.9k
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Any comparisons of read length for variant calling?
... Are there any studies of comparing lengths of 100, 150 and 250 bp (paired end) for variant calling (SNP detection). I was wondering how much we gain (true positive, false negatives) in we sequence a longer read by Ilumina (not PacBio). ...
assembly next-gen variant snp gatk written 2.6 years ago by Sukhdeep Singh9.9k • updated 2.6 years ago by Brian Bushnell17k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... [FYI] Only available from v1.3, I couldn't find that parameter in my version https://github.com/samtools/samtools/issues/374 ...
written 2.9 years ago by Sukhdeep Singh9.9k
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Many congratulations on publishing the book, yet another feat you (other contributors) have achieved after the Biostars.org itself. I have advertised book to many people already who ask me on a daily basis how to start in Bioinformatics, clear, concise and to the point. Would love to contribute to t ...
written 2.9 years ago by Sukhdeep Singh9.9k
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Comment: C: Learning Python: list of resources
... Also, good collection here [What-is-the-best-online-resource-to-learn-Python][1] [1]: https://www.quora.com/What-is-the-best-online-resource-to-learn-Python ...
written 3.1 years ago by Sukhdeep Singh9.9k

Latest awards to Sukhdeep Singh

Great Question 6 weeks ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Multiple Bam To Multiple Sam
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Popular Question 10 weeks ago, created a question with more than 1,000 views. For What is the correct way to cite a technology like ABI Solid Sequencing?
Great Question 11 weeks ago, created a question with more than 5,000 views. For Tophat Error : Oserror: [Errno 2] No Such File Or Directory
Popular Question 3 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Popular Question 3 months ago, created a question with more than 1,000 views. For What is the correct way to cite a technology like ABI Solid Sequencing?
Great Question 3 months ago, created a question with more than 5,000 views. For Tophat Error : Oserror: [Errno 2] No Such File Or Directory
Appreciated 5 months ago, created a post with more than 5 votes. For A: Multiple Bam To Multiple Sam
Great Question 5 months ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Is Biostar Killing The Bioinformatics Core?
Scholar 9 months ago, created an answer that has been accepted. For A: Rename entries of file_1 using their corresponding ids in file_2
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Popular Question 12 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Scholar 16 months ago, created an answer that has been accepted. For A: Rename entries of file_1 using their corresponding ids in file_2
Cylon 16 months ago, received 1,000 up votes.
Good Answer 16 months ago, created an answer that was upvoted at least 5 times. For A: Is Biostar Killing The Bioinformatics Core?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Popular Question 20 months ago, created a question with more than 1,000 views. For How to know if samtools sort exited normally [left temporary files behind]
Popular Question 20 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Appreciated 22 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Appreciated 2.0 years ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Teacher 2.0 years ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?

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