Moderator: Sukhi Singh

gravatar for Sukhi Singh
Sukhi Singh10k
Reputation:
10,190
Status:
Trusted
Location:
Netherlands
Website:
http://sukhdeepsingh.eu/
Scholar ID:
Google Scholar Page
Last seen:
1 week, 2 days ago
Joined:
10 years, 8 months ago
Email:
s****************@gmail.com

Posts by Sukhi Singh

<prev • 774 results • page 1 of 78 • next >
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Comment: C: Is Biostar Killing The Bioinformatics Core?
... I cited some in my thesis :) ...
written 21 months ago by Sukhi Singh10k
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9
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Comment: C: Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
... hahahah and I am having a laugh after 7 years :D ...
written 24 months ago by Sukhi Singh10k
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6
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Answer: A: Is There Is Tool For Variable Tandem Repeats Finding?
... Also, check out [MISA][1] Beier S, Thiel T, Münch T, Scholz U, Mascher M (2017) MISA-web: a web server for microsatellite prediction. Bioinformatics 33 2583–2585. dx.doi.org/10.1093/bioinformatics/btx198 [1]: https://webblast.ipk-gatersleben.de/misa/ ...
written 2.0 years ago by Sukhi Singh10k
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Comment: C: Correlating ChIP-Seq peaks with isoform level expression
... Yes, it also depends on what cell type and organism you are talking about but for most systems, H3K4me3 mark directly correlates with gene expression. ...
written 3.7 years ago by Sukhi Singh10k
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Comment: C: Any comparisons of read length for variant calling?
... Thanks Brian for the information. ...
written 3.9 years ago by Sukhi Singh10k
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Comment: C: Any comparisons of read length for variant calling?
... Very informative. Thanks Harold ...
written 3.9 years ago by Sukhi Singh10k
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Any comparisons of read length for variant calling?
... Are there any studies of comparing lengths of 100, 150 and 250 bp (paired end) for variant calling (SNP detection). I was wondering how much we gain (true positive, false negatives) in we sequence a longer read by Ilumina (not PacBio). ...
assembly next-gen variant snp gatk written 3.9 years ago by Sukhi Singh10k • updated 3.9 years ago by Brian Bushnell17k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... [FYI] Only available from v1.3, I couldn't find that parameter in my version https://github.com/samtools/samtools/issues/374 ...
written 4.1 years ago by Sukhi Singh10k
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Many congratulations on publishing the book, yet another feat you (other contributors) have achieved after the Biostars.org itself. I have advertised book to many people already who ask me on a daily basis how to start in Bioinformatics, clear, concise and to the point. Would love to contribute to t ...
written 4.2 years ago by Sukhi Singh10k
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Comment: C: Learning Python: list of resources
... Also, good collection here [What-is-the-best-online-resource-to-learn-Python][1] [1]: https://www.quora.com/What-is-the-best-online-resource-to-learn-Python ...
written 4.4 years ago by Sukhi Singh10k

Latest awards to Sukhi Singh

Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Multiple Bam To Multiple Sam
Popular Question 16 months ago, created a question with more than 1,000 views. For Can we call a protein under undergone ChIP as ChIP'd protein? Is it formal?
Great Question 16 months ago, created a question with more than 5,000 views. For Tophat Error : Oserror: [Errno 2] No Such File Or Directory
Appreciated 16 months ago, created a post with more than 5 votes. For A: Multiple Bam To Multiple Sam
Good Answer 16 months ago, created an answer that was upvoted at least 5 times. For A: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Good Answer 16 months ago, created an answer that was upvoted at least 5 times. For A: Would There Be Interest In A 'Next-Gen Sequencing' Stackexchange Site?
Epic Question 16 months ago, created a question with more than 10,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Great Question 16 months ago, created a question with more than 5,000 views. For Effective Genome Size Of Mm10 For Macs14
Scholar 16 months ago, created an answer that has been accepted. For A: Basic computer question: why does my computer slow AFTER running a script?
Great Question 16 months ago, created a question with more than 5,000 views. For Bioinformatics short paper journal resource [software/webapps/database]
Scholar 16 months ago, created an answer that has been accepted. For A: Average Width Of H3K4Me3 Peaks
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Multiple Bam To Multiple Sam
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Epic Question 16 months ago, created a question with more than 10,000 views. For Tophat Error : Oserror: [Errno 2] No Such File Or Directory
Great Question 16 months ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Popular Question 17 months ago, created a question with more than 1,000 views. For What is the correct way to cite a technology like ABI Solid Sequencing?
Commentator 17 months ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Multiple Bam To Multiple Sam
Great Question 17 months ago, created a question with more than 5,000 views. For Tophat Error : Oserror: [Errno 2] No Such File Or Directory
Great Question 18 months ago, created a question with more than 5,000 views. For Tophat Error : Oserror: [Errno 2] No Such File Or Directory
Popular Question 18 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Popular Question 18 months ago, created a question with more than 1,000 views. For What is the correct way to cite a technology like ABI Solid Sequencing?
Appreciated 20 months ago, created a post with more than 5 votes. For A: Multiple Bam To Multiple Sam
Great Question 20 months ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]

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