Moderator: Sukhdeep Singh

gravatar for Sukhdeep Singh
Sukhdeep Singh9.5k
Reputation:
9,510
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Location:
Netherlands
Website:
http://www.biotec.tu-d...
Scholar ID:
Google Scholar Page
Last seen:
1 day, 19 hours ago
Joined:
8 years, 5 months ago
Email:
s****************@gmail.com

Bioinformatics Scientist at HZPC

  

Posts by Sukhdeep Singh

<prev • 772 results • page 1 of 78 • next >
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Comment: C: Correlating ChIP-Seq peaks with isoform level expression
... Yes, it also depends on what cell type and organism you are talking about but for most systems, H3K4me3 mark directly correlates with gene expression. ...
written 17 months ago by Sukhdeep Singh9.5k
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Comment: C: Any comparisons of read length for variant calling?
... Thanks Brian for the information. ...
written 19 months ago by Sukhdeep Singh9.5k
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Comment: C: Any comparisons of read length for variant calling?
... Very informative. Thanks Harold ...
written 19 months ago by Sukhdeep Singh9.5k
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Any comparisons of read length for variant calling?
... Are there any studies of comparing lengths of 100, 150 and 250 bp (paired end) for variant calling (SNP detection). I was wondering how much we gain (true positive, false negatives) in we sequence a longer read by Ilumina (not PacBio). ...
assembly next-gen variant snp gatk written 19 months ago by Sukhdeep Singh9.5k • updated 19 months ago by Brian Bushnell16k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
... [FYI] Only available from v1.3, I couldn't find that parameter in my version https://github.com/samtools/samtools/issues/374 ...
written 22 months ago by Sukhdeep Singh9.5k
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Many congratulations on publishing the book, yet another feat you (other contributors) have achieved after the Biostars.org itself. I have advertised book to many people already who ask me on a daily basis how to start in Bioinformatics, clear, concise and to the point. Would love to contribute to t ...
written 22 months ago by Sukhdeep Singh9.5k
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Comment: C: Learning Python: list of resources
... Also, good collection here [What-is-the-best-online-resource-to-learn-Python][1] [1]: https://www.quora.com/What-is-the-best-online-resource-to-learn-Python ...
written 2.1 years ago by Sukhdeep Singh9.5k
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Comment: C: Establishing a Core Bioinformatics Facility
... "kicking BAM files down to the wet lab folks" hahaha xD ...
written 2.1 years ago by Sukhdeep Singh9.5k
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Comment: C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
... No, I don't think so. ...
written 2.2 years ago by Sukhdeep Singh9.5k
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Comment: C: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
... Hi, use [bedClip][1] (link is from my old blog post). [1]: http://biofeed.tumblr.com/post/16758640444/ngschip-seq-bedclip-to-clip-out-off-end ...
written 2.4 years ago by Sukhdeep Singh9.5k

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Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Is Biostar Killing The Bioinformatics Core?
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
Scholar 4 months ago, created an answer that has been accepted. For A: Rename entries of file_1 using their corresponding ids in file_2
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Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Is Biostar Killing The Bioinformatics Core?
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Popular Question 7 months ago, created a question with more than 1,000 views. For How to know if samtools sort exited normally [left temporary files behind]
Popular Question 7 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Appreciated 9 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
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Popular Question 13 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Great Question 14 months ago, created a question with more than 5,000 views. For Visualizing Chip-Seq Data Using Ucsc [Bigwig]
Popular Question 14 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Appreciated 15 months ago, created a post with more than 5 votes. For A: Is Biostar Killing The Bioinformatics Core?
Good Answer 16 months ago, created an answer that was upvoted at least 5 times. For A: Is Biostar Killing The Bioinformatics Core?
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Popular Question 16 months ago, created a question with more than 1,000 views. For A programming language for living cells [Cello]
Good Question 16 months ago, asked a question that was upvoted at least 5 times. For Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
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