User: Dunois

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Dunois490
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Posts by Dunois

<prev • 162 results • page 1 of 17 • next >
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Comment: C: GO enrichment analysis in R on Solanum lycopersicum proteomics dataset
... Take a look at [goseq][1]. [1]: https://bioconductor.org/packages/release/bioc/html/goseq.html ...
written 1 day ago by Dunois490
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What proportion of the (coding) genome is actually expressed at any given time?
... (Please forgive me if this is a trivial/stupid question.) Say a genome has *n* genes that code for proteins. Sampling the mRNA pool produced by this genome at time *t* yields *m* distinct mRNAs. My question is, are there any estimates for what *m/n* is **in general**. (Like 5%, 50%, etc.) That is, ...
genome gene expression rna-seq written 4 days ago by Dunois490 • updated 4 days ago by GenoMax95k
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Comment: C: Annotating two columns at the same time
... Could you please illustrate what you'd like to do with some example data (and the expected output)? ...
written 4 days ago by Dunois490
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Comment: C: Identification of lncRNA target genes
... Perhaps [this][1], [this][2], [this][3], and [this][4] are relevant? [1]: https://www.biostars.org/p/276961/ [2]: https://www.frontiersin.org/articles/10.3389/fgene.2019.00462/full [3]: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5497-4 [4]: https://pubmed.ncbi.nlm.ni ...
written 7 days ago by Dunois490
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... So it was just the compressed file then? I hope everything goes smoothly hereonforth. ...
written 8 days ago by Dunois490
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Comment: C: Mutating columns by changing units - R/dplyr solution
... Never realized `case_when()` is a thing. TIL. Thank you!! ...
written 8 days ago by Dunois490
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Answer: A: Mutating columns by changing units - R/dplyr solution
... Here's one potential solution. Assuming your data is stored in a `data.frame` named `df`: library(stringr) library(dplyr) library(magrittr) #Converting all blanks into NAs for easier handling. df %<>% mutate(across(everything(), ~ifelse(str_detect(., "^$"), NA, .))) ...
written 8 days ago by Dunois490
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Comment: C: Mutating columns by changing units - R/dplyr solution
... Apologies. Is that completely representative? Are there any aspects to the data that isn't addressed by the example in your OP? ...
written 8 days ago by Dunois490
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Comment: C: Mutating columns by changing units - R/dplyr solution
... Could you please give us some representative data to work with? ...
written 8 days ago by Dunois490
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Comment: C: Protein Structure Chains
... You can "freeze" the backbone into (mostly) a single conformation (think crystallography, cryo-EM), and then image that. Edit: derp, not sure why I commented on a post that's half a decade old. ...
written 9 days ago by Dunois490

Latest awards to Dunois

Scholar 8 days ago, created an answer that has been accepted. For A: Gene Ontology Bubble Plot using ggplot2
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: Gene Ontology Bubble Plot using ggplot2
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