User: Dunois
Dunois • 490
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Posts by Dunois
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... Take a look at [goseq][1].
[1]: https://bioconductor.org/packages/release/bioc/html/goseq.html ...
written 1 day ago by
Dunois • 490
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... (Please forgive me if this is a trivial/stupid question.)
Say a genome has *n* genes that code for proteins. Sampling the mRNA pool produced by this genome at time *t* yields *m* distinct mRNAs.
My question is, are there any estimates for what *m/n* is **in general**. (Like 5%, 50%, etc.) That is, ...
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... Could you please illustrate what you'd like to do with some example data (and the expected output)? ...
written 4 days ago by
Dunois • 490
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... Perhaps [this][1], [this][2], [this][3], and [this][4] are relevant?
[1]: https://www.biostars.org/p/276961/
[2]: https://www.frontiersin.org/articles/10.3389/fgene.2019.00462/full
[3]: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5497-4
[4]: https://pubmed.ncbi.nlm.ni ...
written 7 days ago by
Dunois • 490
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... So it was just the compressed file then? I hope everything goes smoothly hereonforth. ...
written 8 days ago by
Dunois • 490
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... Never realized `case_when()` is a thing. TIL. Thank you!! ...
written 8 days ago by
Dunois • 490
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... Here's one potential solution. Assuming your data is stored in a `data.frame` named `df`:
library(stringr)
library(dplyr)
library(magrittr)
#Converting all blanks into NAs for easier handling.
df %<>% mutate(across(everything(), ~ifelse(str_detect(., "^$"), NA, .)))
...
written 8 days ago by
Dunois • 490
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... Apologies. Is that completely representative? Are there any aspects to the data that isn't addressed by the example in your OP? ...
written 8 days ago by
Dunois • 490
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... Could you please give us some representative data to work with? ...
written 8 days ago by
Dunois • 490
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Comment:
C: Protein Structure Chains
... You can "freeze" the backbone into (mostly) a single conformation (think crystallography, cryo-EM), and then image that.
Edit: derp, not sure why I commented on a post that's half a decade old. ...
written 9 days ago by
Dunois • 490
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For A: Gene Ontology Bubble Plot using ggplot2
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8 days ago,
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For A: Gene Ontology Bubble Plot using ggplot2
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For C: Loop function for ggplot2 bar chart for multiple variants
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21 days ago,
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For C: Loop function for ggplot2 bar chart for multiple variants
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28 days ago,
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For A: Gene Ontology Bubble Plot using ggplot2
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For A: Gene Ontology Bubble Plot using ggplot2
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For A: Gene Ontology Bubble Plot using ggplot2
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For A: Gene Ontology Bubble Plot using ggplot2
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For A: Gene Ontology Bubble Plot using ggplot2
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For A: Gene Ontology Bubble Plot using ggplot2
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