User: Dunois

gravatar for Dunois
Dunois150
Reputation:
150
Status:
Trusted
Location:
Last seen:
13 hours ago
Joined:
3 months, 3 weeks ago
Email:
v*************@gmail.com

Posts by Dunois

<prev • 90 results • page 1 of 9 • next >
0
votes
1
answer
196
views
1
answers
Comment: C: Gene Ontology Bubble Plot using ggplot2
... Oh not at all, I am glad I could help. Don't hesitate to ask if something goes sideways again!! ...
written 18 days ago by Dunois150
0
votes
1
answer
196
views
1
answers
Comment: C: Gene Ontology Bubble Plot using ggplot2
... Hmm I think I know what's happening. Since every point on the plot is getting its own `geom_tile()`, the colors are darker in cases where there is more than one point in the same row (because successive tiles of the same color are being overlaid one on top of the other). I didn't realize that would ...
written 20 days ago by Dunois150
0
votes
1
answer
196
views
1
answers
Comment: C: Gene Ontology Bubble Plot using ggplot2
... Hi, no worries! Could you please perhaps share your code with me? It looks like that transparency for the tiles (`alpha`) is being set conditionally? It could also be because of the `Type` variable (I'm not sure what that's being passed as to `ggplot()`). ...
written 21 days ago by Dunois150
0
votes
1
answer
103
views
1
answers
Comment: C: Looking for easy to use eukaryotic genome annotation pipeline?
... Is there an equivalent list for transcriptome annotation tools/pipelines? ...
written 22 days ago by Dunois150
0
votes
1
answer
81
views
1
answers
Comment: C: How to make blastp show complete gene name?
... `-outfmt '6 stitle '` would get you tabular output with `stitle` being the column for the "full" name of the target. ...
written 23 days ago by Dunois150
0
votes
1
answer
118
views
1
answers
Comment: C: Differentially expressed genes machine learning classifier
... I can see where you're coming from, but you're going to have to ask pointed questions to get answers here or elsewhere. Don't give up!! ...
written 23 days ago by Dunois150
0
votes
1
answer
222
views
1
answers
Comment: C: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2)
... > given you do not have much experience I don't have any experience in this whatsoever. This will be my first time doing this. And I suppose I must clarify that by "high quality annotation" (paraphrased) I basically meant annotating what I have as well as I can. I have not heard of Trapid befor ...
written 23 days ago by Dunois150
0
votes
0
answers
111
views
0
answers
Comment: C: blastn --remote option skipping sequences
... That's really strange that anything's getting skipped at all. These sequences that get skipped, do they have matches when they're blasted individually? What database are you searching against, by the way? ...
written 23 days ago by Dunois150
0
votes
1
answer
222
views
1
answers
Comment: C: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2)
... > The longest isoform isn't necessarily the "best" isoform, this is a point made in the Trinity wiki, and repeatedly made at the Trinity mailing lists. For example, the longest isoform could just be a transcript containing an intron, and not necessarily the most expressed transcript - the longest ...
written 23 days ago by Dunois150
0
votes
0
answers
111
views
0
answers
Comment: C: blastn --remote option skipping sequences
... How many sequences were you passing to `blast`? And incidentally, what version of `blast` are you using? ...
written 23 days ago by Dunois150

Latest awards to Dunois

Good Answer 24 days ago, created an answer that was upvoted at least 5 times. For A: Gene Ontology Bubble Plot using ggplot2
Scholar 24 days ago, created an answer that has been accepted. For A: Gene Ontology Bubble Plot using ggplot2
Appreciated 25 days ago, created a post with more than 5 votes. For A: Gene Ontology Bubble Plot using ggplot2
Teacher 25 days ago, created an answer with at least 3 up-votes. For A: Gene Ontology Bubble Plot using ggplot2
Rising Star 25 days ago, created 50 posts within first three months of joining.
Voter 26 days ago, voted more than 100 times.
Supporter 8 weeks ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1319 users visited in the last hour