User: Dunois
Dunois • 150
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Posts by Dunois
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... Oh not at all, I am glad I could help. Don't hesitate to ask if something goes sideways again!! ...
written 18 days ago by
Dunois • 150
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... Hmm I think I know what's happening. Since every point on the plot is getting its own `geom_tile()`, the colors are darker in cases where there is more than one point in the same row (because successive tiles of the same color are being overlaid one on top of the other). I didn't realize that would ...
written 20 days ago by
Dunois • 150
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... Hi, no worries! Could you please perhaps share your code with me? It looks like that transparency for the tiles (`alpha`) is being set conditionally? It could also be because of the `Type` variable (I'm not sure what that's being passed as to `ggplot()`). ...
written 21 days ago by
Dunois • 150
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... Is there an equivalent list for transcriptome annotation tools/pipelines? ...
written 22 days ago by
Dunois • 150
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... `-outfmt '6 stitle '` would get you tabular output with `stitle` being the column for the "full" name of the target. ...
written 23 days ago by
Dunois • 150
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... I can see where you're coming from, but you're going to have to ask pointed questions to get answers here or elsewhere. Don't give up!! ...
written 23 days ago by
Dunois • 150
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... > given you do not have much experience
I don't have any experience in this whatsoever. This will be my first time doing this. And I suppose I must clarify that by "high quality annotation" (paraphrased) I basically meant annotating what I have as well as I can.
I have not heard of Trapid befor ...
written 23 days ago by
Dunois • 150
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... That's really strange that anything's getting skipped at all. These sequences that get skipped, do they have matches when they're blasted individually? What database are you searching against, by the way? ...
written 23 days ago by
Dunois • 150
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... > The longest isoform isn't necessarily the "best" isoform, this is a point made in the Trinity wiki, and repeatedly made at the Trinity mailing lists. For example, the longest isoform could just be a transcript containing an intron, and not necessarily the most expressed transcript - the longest ...
written 23 days ago by
Dunois • 150
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... How many sequences were you passing to `blast`? And incidentally, what version of `blast` are you using? ...
written 23 days ago by
Dunois • 150
Latest awards to Dunois
Good Answer
24 days ago,
created an answer that was upvoted at least 5 times.
For A: Gene Ontology Bubble Plot using ggplot2
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24 days ago,
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For A: Gene Ontology Bubble Plot using ggplot2
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25 days ago,
created a post with more than 5 votes.
For A: Gene Ontology Bubble Plot using ggplot2
Teacher
25 days ago,
created an answer with at least 3 up-votes.
For A: Gene Ontology Bubble Plot using ggplot2
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25 days ago,
created 50 posts within first three months of joining.
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26 days ago,
voted more than 100 times.
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8 weeks ago,
voted at least 25 times.
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