User: kennethcondon2007

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Posts by kennethcondon2007

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Comment: A: wig files to bigwig using UCSC kent
... Not sure but could this is contig (like chrUN) in the wiggle file that has no match in the reference. If so, i would just delete all occurrences of it with awk/sed. ...
written 4 hours ago by kennethcondon20071.1k
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Comment: C: MEME result v FIMO result for target annotation
... edited...that was a typo...thx ...
written 5 hours ago by kennethcondon20071.1k
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MEME result v FIMO result for target annotation
... Hi all, For simplicity I have a single sample that I have run meme-chip on. Also, for simplicity lets assume there is a single motif returned as enriched. The output of the single meme-chip run includes meme results and fimo results. I want to: 1) Identify the genomic locations of all occurances o ...
fimo meme annotation written 9 hours ago by kennethcondon20071.1k
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Comment: C: difference between sra files - SRR n SRX
... and did u run fastqc on the fastq files created? was there any differences in the fastqc results? ...
written 10 hours ago by kennethcondon20071.1k
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Comment: A: difference between sra files - SRR n SRX
... have u looked inside the contents of each? what did you notice? ...
written 13 hours ago by kennethcondon20071.1k
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Comment: C: finding candidate genes and their annotations
... Well I was thinking that op can extract the genomic locations of those peaks he/she's interested in...then the program will annotate the locations with the gene that it is inside or near. No complex analysis...literally just location annotation ...
written 1 day ago by kennethcondon20071.1k
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Comment: C: Differential genes expression in knockdown experiment
... Often when running complex packages that someone else creates you come across an error that stumps you. The first thing to do is google the error! These packages have been around for years....someone will have had the same problem before you. [Google results][1] From the [first google result][2] h ...
written 2 days ago by kennethcondon20071.1k
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Answer: A: Picard liftoverVCF error when attempting to liftover to build 38
... Can you locate the line that is causing the error....remove it (and all like it)....and rerun? The point --> get it working first on a test data set...then iron out the problems with the real data set. ...
written 2 days ago by kennethcondon20071.1k
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Answer: C: Differential genes expression in knockdown experiment
... Stick with the DESEQ2 package.... and describe exactly the problem you are having with it. What does your input look like? What errors are you getting. This is how to solve the problem. Not by jumping to something else (where you will probably hit a wall also). You may also want to post this on [bi ...
written 2 days ago by kennethcondon20071.1k
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Comment: C: Vacancies at Newcastle University, UK
... I'm actually preparing an email for you now Simon, thanks. ...
written 2 days ago by kennethcondon20071.1k

Latest awards to kennethcondon2007

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Scholar 8 weeks ago, created an answer that has been accepted. For C: Displaying genes in genome browsers
Scholar 8 weeks ago, created an answer that has been accepted. For C: Displaying genes in genome browsers
Popular Question 11 weeks ago, created a question with more than 1,000 views. For RNA-seq RPKM significance cut off
Scholar 11 weeks ago, created an answer that has been accepted. For C: Displaying genes in genome browsers
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