User: pixie@bioinfo

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pixie@bioinfo1.4k
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Posts by pixie@bioinfo

<prev • 199 results • page 1 of 20 • next >
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Comment: C: Intersecting regions in the genome
... Okay, Thanks I am looking into this ...
written 1 day ago by pixie@bioinfo1.4k
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Intersecting regions in the genome
... I had written a python code which outputs list of lists of start and end positions of chromosomal coordinates corresponding to certain GC% bins for example, `GC_10: [[20451, 20500], [32451, 32500], [38301, 38350]]` `GC_50: [[615051, 615100], [616501, 616550], [622201, 622250], [623301, 623350]]` ...
genome written 1 day ago by pixie@bioinfo1.4k
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Comment: C: Unable to map genes to KEGG pathway using pathview
... Hi, could you solve your issue ? I am facing the same problem ...
written 16 days ago by pixie@bioinfo1.4k
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Ideas for integrating transcriptomic data/co-expression network and genome-scale metabolic networks
... Hello, I have RNA-seq time-series data from various stress conditions of a plant. I have the stress and time-point specific DEGs, as well as co-expression networks of the DEGs. I need some idea as to how I can use the genome-scale metabolic network (GEM) of the given plant for an integrated analysis ...
pathway rna-seq written 25 days ago by pixie@bioinfo1.4k
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Answer: A: How to get the pathway-protein relationship?
... You can try STRING DB. The give protein-protein interactions + KEGG pathway annotations ...
written 4 weeks ago by pixie@bioinfo1.4k
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Comment: C: Calculating correlations using data from different experimental methods for a co
... Correct, zero read counts for the given gene, so plug in RT-PCR data ...
written 4 weeks ago by pixie@bioinfo1.4k
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Comment: C: Calculating correlations using data from different experimental methods for a co
... Unfortunately, Its becoming very hard to explain them the logic behind it -_- ...
written 4 weeks ago by pixie@bioinfo1.4k
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Calculating correlations using data from different experimental methods for a co-expression network
... Hello, I have data from RNA-seq as raw read counts from 3 replicates from control and 3 replicates from treatment. I have to calculate Pearson correlations (PCCs) among the genes after using usual normalization procedures. One of the important transcription factor which is important for the biologic ...
rna-seq pcr written 4 weeks ago by pixie@bioinfo1.4k
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Comment: C: Sequence alignment viewer for a custom database
... Thanks Hugo for the lead, I will look into it ...
written 12 weeks ago by pixie@bioinfo1.4k
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Sequence alignment viewer for a custom database
... Hello, I have developed a pilot database for SNP data for various genotypes in my plant specie. I have used Python-Flask framework with Sqlite3 as the back-end. I have the sequence data for all the genes for every genotype. I want to have a feature such that if a user wants to view a given gene for ...
sequence-alignment database clustal msa written 3 months ago by pixie@bioinfo1.4k

Latest awards to pixie@bioinfo

Popular Question 28 days ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Appreciated 8 weeks ago, created a post with more than 5 votes. For T Cell Specific Gene Expression Data
Epic Question 8 weeks ago, created a question with more than 10,000 views. For Coloring Multiple Nodes In Cytoscape
Great Question 4 months ago, created a question with more than 5,000 views. For T Cell Specific Gene Expression Data
Popular Question 4 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 4 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 6 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 6 months ago, created a question with more than 1,000 views. For KEGGREST: restricting pathways of compounds to certain organisms
Popular Question 7 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 7 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 8 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 8 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Popular Question 9 months ago, created a question with more than 1,000 views. For Internship opportunities for PhD students ?
Popular Question 9 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Great Question 13 months ago, created a question with more than 5,000 views. For Front End For Database..
Popular Question 13 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Popular Question 14 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Student 16 months ago, asked a question with at least 3 up-votes. For T Cell Specific Gene Expression Data
Popular Question 16 months ago, created a question with more than 1,000 views. For Internship opportunities for PhD students ?
Popular Question 16 months ago, created a question with more than 1,000 views. For Internship opportunities for PhD students ?
Epic Question 16 months ago, created a question with more than 10,000 views. For Coloring Multiple Nodes In Cytoscape
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Gene ontology and KEGG pathway analysis of rice RNA-seq data
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Scholar 17 months ago, created an answer that has been accepted. For A: RNA Seq data for WGCNA
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