User: pixie@bioinfo

gravatar for pixie@bioinfo
pixie@bioinfo1.4k
Reputation:
1,380
Status:
Trusted
Location:
Last seen:
2 months, 1 week ago
Joined:
9 years, 6 months ago
Email:
s***************@gmail.com

PhD Student

Posts by pixie@bioinfo

<prev • 200 results • page 1 of 20 • next >
0
votes
1
answer
192
views
1
answer
KEGG pathway visualization AND Cytoscape
... Hello, I have been trying to visualize KEGG pathways for a group of metabolites (in Tomato). I am getting mappings to 34 different pathways, many of which have common metabolites. My supervisor wants me to combine the individual pathways in a global map so that we can color code the nodes and see th ...
kegg written 3 months ago by pixie@bioinfo1.4k • updated 3 months ago by sgoetz12320
0
votes
1
answer
158
views
1
answers
Comment: C: Intersecting regions in the genome
... Okay, Thanks I am looking into this ...
written 6 months ago by pixie@bioinfo1.4k
1
vote
1
answer
158
views
1
answer
Intersecting regions in the genome
... I had written a python code which outputs list of lists of start and end positions of chromosomal coordinates corresponding to certain GC% bins for example, `GC_10: [[20451, 20500], [32451, 32500], [38301, 38350]]` `GC_50: [[615051, 615100], [616501, 616550], [622201, 622250], [623301, 623350]]` ...
genome written 6 months ago by pixie@bioinfo1.4k
0
votes
2
answers
1.3k
views
2
answers
Comment: C: Unable to map genes to KEGG pathway using pathview
... Hi, could you solve your issue ? I am facing the same problem ...
written 7 months ago by pixie@bioinfo1.4k
0
votes
0
answers
221
views
0
answers
Ideas for integrating transcriptomic data/co-expression network and genome-scale metabolic networks
... Hello, I have RNA-seq time-series data from various stress conditions of a plant. I have the stress and time-point specific DEGs, as well as co-expression networks of the DEGs. I need some idea as to how I can use the genome-scale metabolic network (GEM) of the given plant for an integrated analysis ...
pathway rna-seq written 7 months ago by pixie@bioinfo1.4k
2
votes
4
answers
311
views
4
answers
Answer: A: How to get the pathway-protein relationship?
... You can try STRING DB. The give protein-protein interactions + KEGG pathway annotations ...
written 7 months ago by pixie@bioinfo1.4k
0
votes
0
answers
227
views
0
answers
Comment: C: Calculating correlations using data from different experimental methods for a co
... Correct, zero read counts for the given gene, so plug in RT-PCR data ...
written 7 months ago by pixie@bioinfo1.4k
1
vote
0
answers
227
views
0
answers
Comment: C: Calculating correlations using data from different experimental methods for a co
... Unfortunately, Its becoming very hard to explain them the logic behind it -_- ...
written 7 months ago by pixie@bioinfo1.4k
3
votes
0
answers
227
views
0
answers
Calculating correlations using data from different experimental methods for a co-expression network
... Hello, I have data from RNA-seq as raw read counts from 3 replicates from control and 3 replicates from treatment. I have to calculate Pearson correlations (PCCs) among the genes after using usual normalization procedures. One of the important transcription factor which is important for the biologic ...
rna-seq pcr written 7 months ago by pixie@bioinfo1.4k
0
votes
0
answers
251
views
0
answers
Comment: C: Sequence alignment viewer for a custom database
... Thanks Hugo for the lead, I will look into it ...
written 9 months ago by pixie@bioinfo1.4k

Latest awards to pixie@bioinfo

Popular Question 3 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Student 6 months ago, asked a question with at least 3 up-votes. For Suggestions regarding bioinformatics journal
Popular Question 6 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 6 months ago, created a question with more than 1,000 views. For KEGGREST: restricting pathways of compounds to certain organisms
Appreciated 6 months ago, created a post with more than 5 votes. For T Cell Specific Gene Expression Data
Good Question 6 months ago, asked a question that was upvoted at least 5 times. For Disease Associated Snps
Popular Question 7 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Epic Question 8 months ago, created a question with more than 10,000 views. For Coloring Multiple Nodes In Cytoscape
Appreciated 8 months ago, created a post with more than 5 votes. For T Cell Specific Gene Expression Data
Great Question 11 months ago, created a question with more than 5,000 views. For T Cell Specific Gene Expression Data
Popular Question 11 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 11 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 13 months ago, created a question with more than 1,000 views. For KEGGREST: restricting pathways of compounds to certain organisms
Popular Question 13 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 13 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 14 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 15 months ago, created a question with more than 1,000 views. For Differential Gene Expression Analysis with NimbleGen microarrays
Popular Question 15 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Popular Question 15 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Popular Question 15 months ago, created a question with more than 1,000 views. For Internship opportunities for PhD students ?
Popular Question 20 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Great Question 20 months ago, created a question with more than 5,000 views. For Front End For Database..
Popular Question 20 months ago, created a question with more than 1,000 views. For How to start off building a Cytoscape plugin
Student 23 months ago, asked a question with at least 3 up-votes. For T Cell Specific Gene Expression Data
Popular Question 23 months ago, created a question with more than 1,000 views. For Internship opportunities for PhD students ?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1820 users visited in the last hour