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175
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Comment: Comment: Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
29 days ago by pixie@bioinfo ★ 1.4k
0
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3
replies
175
views
Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
Illumina mini-seq
updated 29 days ago by 118k • written 29 days ago by ★ 1.4k
0
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0
replies
179
views
Forum: Bioinformatics for understanding cancer and other diseases
omics bioinformatics
9 weeks ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
108
views
pysam fetch alignments corresponding to a taxid
pysam samtools
3 months ago by pixie@bioinfo ★ 1.4k
0
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0
replies
225
views
Comment: Comment: How to calculate p-value for Network Data (Cluster Detection)
3 months ago by pixie@bioinfo ★ 1.4k
0
votes
2
replies
225
views
How to calculate p-value for Network Data (Cluster Detection)
network correlation
3 months ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
152
views
Diagnostic Plots for SNP quality assesment
vcf
5 months ago by pixie@bioinfo ★ 1.4k
1
vote
1
reply
210
views
VCF file, calculate depth per sample
vcf bcftools
updated 6 months ago by ▴ 140 • written 6 months ago by ★ 1.4k
0
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1
reply
265
views
Comment: Comment: Identify predicted TF targets by binding motif
6 months ago by pixie@bioinfo ★ 1.4k
0
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1
reply
243
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Problem with VCF format while using "VariantAnnotation" R package
vcf
updated 6 months ago by ★ 1.1k • written 6 months ago by ★ 1.4k
8
votes
11
replies
5.5k
views
6 follow
Heatmap In R-Wgcna-->Error While Plotting Tom
r heatmap
updated 6 months ago by • 0 • written 9.1 years ago by ★ 1.4k
0
votes
0
replies
177
views
Information about Genotyping by Sequencing (GBS)
snp
updated 8 months ago by 118k • written 8 months ago by ★ 1.4k
0
votes
0
replies
278
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Create combined CpG and non-CpG bedgraphs for DNA methylation using Bismark
methylation
10 months ago by pixie@bioinfo ★ 1.4k
2
votes
2
replies
422
views
R programming: basics to challenging
R
updated 13 months ago by 64k • written 13 months ago by ★ 1.4k
0
votes
1
reply
903
views
Plots for Correlation between two dataframes by row
R
updated 14 months ago by 82k • written 14 months ago by ★ 1.4k
0
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2
replies
322
views
Ideas to represent RNA-seq expression profile (Z-scores) and the significance level at the same time
R RNAseq
updated 14 months ago by ★ 2.8k • written 14 months ago by ★ 1.4k
2
votes
9
replies
18k
views
7 follow
HISAT error: Encountered internal HISAT2 exception (#1)
RNA-Seq
updated 15 months ago by • 0 • written 5.2 years ago by ★ 1.4k
0
votes
1
reply
491
views
Segmentation fault with HOMER
homer HiC
updated 7 months ago by • 0 • written 17 months ago by ★ 1.4k
1
vote
3
replies
1.5k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
AI/ML Forum
updated 18 months ago by ▴ 250 • written 23 months ago by ★ 1.4k
0
votes
1
reply
297
views
P value for test for proportions and random sampling
R
18 months ago by pixie@bioinfo ★ 1.4k
2
votes
0
replies
753
views
Answer: A: Self Organizing Maps for RNA-seq data
updated 20 months ago by 118k • written 20 months ago by ★ 1.4k
4
votes
3
replies
753
views
Self Organizing Maps for RNA-seq data
RNA-Seq
20 months ago by pixie@bioinfo ★ 1.4k
0
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0
replies
753
views
Comment: C: Self Organizing Maps for RNA-seq data
20 months ago by pixie@bioinfo ★ 1.4k
0
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0
replies
879
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Comment: C: Using Deeptool for profile plots
20 months ago by pixie@bioinfo ★ 1.4k
0
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1
reply
879
views
Comment: C: Using Deeptool for profile plots
21 months ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
879
views
Comment: C: Using Deeptool for profile plots
21 months ago by pixie@bioinfo ★ 1.4k
2
votes
5
replies
879
views
Using Deeptool for profile plots
deeptools
21 months ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
412
views
Issue with Diffreps
ChIP-Seq
21 months ago by pixie@bioinfo ★ 1.4k
0
votes
2
replies
1.2k
views
Bismark: bedgraph to bigwig for DNA methylation
methylation
updated 21 months ago by • 0 • written 22 months ago by ★ 1.4k
0
votes
0
replies
365
views
Ideas Regarding TF regulatory network
network
21 months ago by pixie@bioinfo ★ 1.4k
0
votes
1
reply
1.1k
views
CUT&RUN analysis pipeline
alignment sequencing
updated 21 months ago by 9.3k • written 21 months ago by ★ 1.4k
1
vote
1
reply
414
views
Bedtools to make a bed file for promoter
bedtools
updated 22 months ago by 9.5k • written 22 months ago by ★ 1.4k
1
vote
1
reply
659
views
DMR detection tools for whole genome bisulphite sequencing data in Plants
R
updated 22 months ago by ▴ 350 • written 22 months ago by ★ 1.4k
7
votes
6
replies
919
views
Plant orthologous genes
gene
updated 23 months ago by 14k • written 23 months ago by ★ 1.4k
11
votes
4
replies
13k
views
Importing Network From Wgcna Into Cytoscape
cytoscape network
updated 6 months ago by ▴ 30 • written 9.6 years ago by ★ 1.4k
0
votes
0
replies
751
views
Comment: C: p value for permutation test for gene-interaction data
2.1 years ago by pixie@bioinfo ★ 1.4k
1
vote
3
replies
751
views
p value for permutation test for gene-interaction data
statistics
updated 2.1 years ago by 9.9k • written 2.1 years ago by ★ 1.4k
0
votes
0
replies
1.8k
views
Answer: A: How to combine two networks
2.1 years ago by pixie@bioinfo ★ 1.4k
3
votes
7
replies
1.7k
views
Statistical test for overlap
statistics
updated 2.2 years ago by ▴ 990 • written 2.2 years ago by ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: C: Boxplots from ChIP-seq Data
2.4 years ago by pixie@bioinfo ★ 1.4k
3
votes
2
replies
1.1k
views
Boxplots from ChIP-seq Data
ChIP-Seq
updated 2.4 years ago by 8.4k • written 2.4 years ago by ★ 1.4k
0
votes
1
reply
555
views
Heatmap using Interaction/HiCHip data
ngs heatmap
2.5 years ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
649
views
Job: Post-Doctoral position (Bioinformatics) in the Chromosome Dynamics team at the Institut des Sciences des Plantes - Paris-Saclay (IPS2)
ChIP-Seq next-gen R Job
2.5 years ago by pixie@bioinfo ★ 1.4k
0
votes
1
reply
571
views
Finding over and under-represented interactions using HOMER
homer hic
2.6 years ago by pixie@bioinfo ★ 1.4k
2
votes
1
reply
6.6k
views
Answer: A: Cytoscape Plug-In For Retrieving Protein-Protein Interactions
updated 2.9 years ago by 36k • written 11.0 years ago by ★ 1.4k
21
votes
15
replies
3.3k
views
Functional Annotation Of Domains...
protein
updated 2.9 years ago by 20 • written 11.9 years ago by ★ 1.4k
0
votes
2
replies
1.9k
views
KEGG pathway visualization AND Cytoscape
KEGG
updated 3.0 years ago by ▴ 20 • written 3.0 years ago by ★ 1.4k
0
votes
0
replies
429
views
Comment: C: Intersecting regions in the genome
3.3 years ago by pixie@bioinfo ★ 1.4k
1
vote
2
replies
429
views
Intersecting regions in the genome
genome
3.3 years ago by pixie@bioinfo ★ 1.4k
0
votes
1
reply
6.0k
views
Comment: C: Unable to map genes to KEGG pathway using pathview
3.3 years ago by pixie@bioinfo ★ 1.4k
241 results • Page 1 of 5
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