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0
votes
1
reply
187
views
Trimming SSR (repetitive primer) sequences
genomics
updated 12 weeks ago by 125k • written 12 weeks ago by ★ 1.4k
0
votes
3
replies
291
views
Calculate distribution of reads over the reference genome
ngs
updated 3 months ago by 20k • written 3 months ago by ★ 1.4k
1
vote
2
replies
338
views
Identifying reliable regions of reference genomes
snp genomics
updated 5 months ago by ★ 1.2k • written 5 months ago by ★ 1.4k
0
votes
1
reply
281
views
Comment: Comment: Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
6 months ago by pixie@bioinfo ★ 1.4k
0
votes
3
replies
281
views
Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
Illumina mini-seq
updated 6 months ago by 125k • written 6 months ago by ★ 1.4k
0
votes
0
replies
329
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 7 weeks ago by 37k • written 8 months ago by ★ 1.4k
0
votes
0
replies
166
views
pysam fetch alignments corresponding to a taxid
pysam samtools
9 months ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
303
views
Comment: Comment: How to calculate p-value for Network Data (Cluster Detection)
9 months ago by pixie@bioinfo ★ 1.4k
0
votes
2
replies
303
views
How to calculate p-value for Network Data (Cluster Detection)
network correlation
9 months ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
209
views
Diagnostic Plots for SNP quality assesment
vcf
11 months ago by pixie@bioinfo ★ 1.4k
1
vote
1
reply
278
views
VCF file, calculate depth per sample
vcf bcftools
updated 11 months ago by ▴ 200 • written 11 months ago by ★ 1.4k
0
votes
1
reply
333
views
Comment: Comment: Identify predicted TF targets by binding motif
11 months ago by pixie@bioinfo ★ 1.4k
0
votes
1
reply
332
views
Problem with VCF format while using "VariantAnnotation" R package
vcf
updated 12 months ago by ★ 1.2k • written 12 months ago by ★ 1.4k
8
votes
11
replies
5.8k
views
6 follow
Heatmap In R-Wgcna-->Error While Plotting Tom
r heatmap
updated 12 months ago by • 0 • written 9.5 years ago by ★ 1.4k
0
votes
0
replies
239
views
Information about Genotyping by Sequencing (GBS)
snp
updated 14 months ago by 125k • written 14 months ago by ★ 1.4k
0
votes
0
replies
368
views
Create combined CpG and non-CpG bedgraphs for DNA methylation using Bismark
methylation
16 months ago by pixie@bioinfo ★ 1.4k
2
votes
2
replies
489
views
R programming: basics to challenging
R
updated 18 months ago by 68k • written 18 months ago by ★ 1.4k
0
votes
1
reply
1.0k
views
Plots for Correlation between two dataframes by row
R
updated 19 months ago by 84k • written 19 months ago by ★ 1.4k
0
votes
2
replies
401
views
Ideas to represent RNA-seq expression profile (Z-scores) and the significance level at the same time
R RNAseq
updated 20 months ago by ★ 2.9k • written 20 months ago by ★ 1.4k
2
votes
9
replies
19k
views
7 follow
HISAT error: Encountered internal HISAT2 exception (#1)
RNA-Seq
updated 21 months ago by • 0 • written 5.7 years ago by ★ 1.4k
0
votes
1
reply
646
views
Segmentation fault with HOMER
homer HiC
updated 12 months ago by • 0 • written 22 months ago by ★ 1.4k
1
vote
3
replies
1.8k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
AI/ML Forum
updated 24 months ago by ▴ 270 • written 2.4 years ago by ★ 1.4k
0
votes
1
reply
387
views
P value for test for proportions and random sampling
R
2.0 years ago by pixie@bioinfo ★ 1.4k
2
votes
0
replies
922
views
Answer: A: Self Organizing Maps for RNA-seq data
updated 2.2 years ago by 125k • written 2.2 years ago by ★ 1.4k
4
votes
3
replies
922
views
Self Organizing Maps for RNA-seq data
RNA-Seq
2.2 years ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
922
views
Comment: C: Self Organizing Maps for RNA-seq data
2.2 years ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: C: Using Deeptool for profile plots
2.2 years ago by pixie@bioinfo ★ 1.4k
0
votes
1
reply
1.1k
views
Comment: C: Using Deeptool for profile plots
2.2 years ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: C: Using Deeptool for profile plots
2.2 years ago by pixie@bioinfo ★ 1.4k
2
votes
5
replies
1.1k
views
Using Deeptool for profile plots
deeptools
2.2 years ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
499
views
Issue with Diffreps
ChIP-Seq
2.2 years ago by pixie@bioinfo ★ 1.4k
4
votes
2
replies
1.5k
views
Bismark: bedgraph to bigwig for DNA methylation
methylation
updated 2.2 years ago by ▴ 20 • written 2.4 years ago by ★ 1.4k
0
votes
0
replies
439
views
Ideas Regarding TF regulatory network
network
2.3 years ago by pixie@bioinfo ★ 1.4k
0
votes
1
reply
1.2k
views
CUT&RUN analysis pipeline
alignment sequencing
updated 2.3 years ago by 11k • written 2.3 years ago by ★ 1.4k
1
vote
1
reply
477
views
Bedtools to make a bed file for promoter
bedtools
updated 2.3 years ago by 10k • written 2.3 years ago by ★ 1.4k
1
vote
1
reply
790
views
DMR detection tools for whole genome bisulphite sequencing data in Plants
R
updated 2.4 years ago by ▴ 350 • written 2.4 years ago by ★ 1.4k
7
votes
6
replies
1.1k
views
Plant orthologous genes
gene
updated 2.4 years ago by 14k • written 2.5 years ago by ★ 1.4k
11
votes
4
replies
14k
views
Importing Network From Wgcna Into Cytoscape
cytoscape network
updated 12 months ago by ▴ 30 • written 10.1 years ago by ★ 1.4k
0
votes
0
replies
870
views
Comment: C: p value for permutation test for gene-interaction data
2.6 years ago by pixie@bioinfo ★ 1.4k
1
vote
3
replies
870
views
p value for permutation test for gene-interaction data
statistics
updated 2.6 years ago by 10k • written 2.6 years ago by ★ 1.4k
0
votes
0
replies
2.1k
views
Answer: A: How to combine two networks
2.6 years ago by pixie@bioinfo ★ 1.4k
3
votes
7
replies
2.2k
views
Statistical test for overlap
statistics
updated 2.6 years ago by ▴ 990 • written 2.6 years ago by ★ 1.4k
0
votes
0
replies
1.3k
views
Comment: C: Boxplots from ChIP-seq Data
2.8 years ago by pixie@bioinfo ★ 1.4k
3
votes
2
replies
1.3k
views
Boxplots from ChIP-seq Data
ChIP-Seq
updated 2.8 years ago by 8.6k • written 2.8 years ago by ★ 1.4k
0
votes
1
reply
637
views
Heatmap using Interaction/HiCHip data
ngs heatmap
3.0 years ago by pixie@bioinfo ★ 1.4k
0
votes
0
replies
718
views
Job: Post-Doctoral position (Bioinformatics) in the Chromosome Dynamics team at the Institut des Sciences des Plantes - Paris-Saclay (IPS2)
ChIP-Seq next-gen R Job
3.0 years ago by pixie@bioinfo ★ 1.4k
0
votes
1
reply
646
views
Finding over and under-represented interactions using HOMER
homer hic
3.1 years ago by pixie@bioinfo ★ 1.4k
2
votes
1
reply
6.7k
views
Answer: A: Cytoscape Plug-In For Retrieving Protein-Protein Interactions
updated 3.4 years ago by 37k • written 11.4 years ago by ★ 1.4k
21
votes
15
replies
3.5k
views
Functional Annotation Of Domains...
protein
updated 3.4 years ago by 20 • written 12.4 years ago by ★ 1.4k
0
votes
2
replies
2.1k
views
KEGG pathway visualization AND Cytoscape
KEGG
updated 3.5 years ago by ▴ 20 • written 3.5 years ago by ★ 1.4k
244 results • Page 1 of 5
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