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2
votes
1
reply
352
views
Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for diagnostic purpose
nanopore
updated 10 weeks ago by 4.9k • written 3 months ago by ★ 1.5k
8
votes
4
replies
475
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 3 months ago by 21k • written 3 months ago by ★ 1.5k
0
votes
1
reply
241
views
Trimming SSR (repetitive primer) sequences
genomics
updated 6 months ago by 129k • written 6 months ago by ★ 1.5k
0
votes
3
replies
384
views
Calculate distribution of reads over the reference genome
ngs
updated 7 months ago by 21k • written 7 months ago by ★ 1.5k
1
vote
2
replies
386
views
Identifying reliable regions of reference genomes
snp genomics
updated 9 months ago by ★ 1.3k • written 9 months ago by ★ 1.5k
0
votes
1
reply
347
views
Comment: Comment: Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
10 months ago by pixie@bioinfo ★ 1.5k
0
votes
3
replies
347
views
Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
Illumina mini-seq
updated 10 months ago by 129k • written 10 months ago by ★ 1.5k
0
votes
0
replies
422
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 5 months ago by 39k • written 12 months ago by ★ 1.5k
0
votes
0
replies
198
views
pysam fetch alignments corresponding to a taxid
pysam samtools
13 months ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
355
views
Comment: Comment: How to calculate p-value for Network Data (Cluster Detection)
13 months ago by pixie@bioinfo ★ 1.5k
0
votes
2
replies
355
views
How to calculate p-value for Network Data (Cluster Detection)
network correlation
13 months ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
241
views
Diagnostic Plots for SNP quality assesment
vcf
15 months ago by pixie@bioinfo ★ 1.5k
2
votes
1
reply
351
views
VCF file, calculate depth per sample
vcf bcftools
updated 16 months ago by ▴ 360 • written 16 months ago by ★ 1.5k
0
votes
1
reply
388
views
Comment: Comment: Identify predicted TF targets by binding motif
16 months ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
430
views
Problem with VCF format while using "VariantAnnotation" R package
vcf
updated 16 months ago by ★ 1.2k • written 16 months ago by ★ 1.5k
8
votes
11
replies
6.0k
views
6 follow
Heatmap In R-Wgcna-->Error While Plotting Tom
r heatmap
updated 16 months ago by • 0 • written 9.9 years ago by ★ 1.5k
0
votes
0
replies
279
views
Information about Genotyping by Sequencing (GBS)
snp
updated 18 months ago by 129k • written 18 months ago by ★ 1.5k
0
votes
0
replies
423
views
Create combined CpG and non-CpG bedgraphs for DNA methylation using Bismark
methylation
20 months ago by pixie@bioinfo ★ 1.5k
2
votes
2
replies
542
views
R programming: basics to challenging
R
updated 23 months ago by 72k • written 23 months ago by ★ 1.5k
0
votes
1
reply
1.1k
views
Plots for Correlation between two dataframes by row
R
updated 24 months ago by 85k • written 24 months ago by ★ 1.5k
0
votes
2
replies
450
views
Ideas to represent RNA-seq expression profile (Z-scores) and the significance level at the same time
R RNAseq
updated 24 months ago by ★ 2.9k • written 24 months ago by ★ 1.5k
2
votes
9
replies
20k
views
7 follow
HISAT error: Encountered internal HISAT2 exception (#1)
RNA-Seq
updated 2.1 years ago by • 0 • written 6.0 years ago by ★ 1.5k
0
votes
1
reply
759
views
Segmentation fault with HOMER
homer HiC
updated 17 months ago by • 0 • written 2.2 years ago by ★ 1.5k
1
vote
3
replies
1.9k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
ML AI
updated 12 weeks ago by 39k • written 2.8 years ago by ★ 1.5k
0
votes
1
reply
410
views
P value for test for proportions and random sampling
R
2.4 years ago by pixie@bioinfo ★ 1.5k
2
votes
0
replies
1.0k
views
Answer: A: Self Organizing Maps for RNA-seq data
updated 2.5 years ago by 129k • written 2.5 years ago by ★ 1.5k
4
votes
3
replies
1.0k
views
Self Organizing Maps for RNA-seq data
RNA-Seq
2.5 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.0k
views
Comment: C: Self Organizing Maps for RNA-seq data
2.5 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.2k
views
Comment: C: Using Deeptool for profile plots
2.5 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
1.2k
views
Comment: C: Using Deeptool for profile plots
2.5 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.2k
views
Comment: C: Using Deeptool for profile plots
2.5 years ago by pixie@bioinfo ★ 1.5k
2
votes
5
replies
1.2k
views
Using Deeptool for profile plots
deeptools
2.5 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
561
views
Issue with Diffreps
ChIP-Seq
2.5 years ago by pixie@bioinfo ★ 1.5k
4
votes
2
replies
1.8k
views
Bismark: bedgraph to bigwig for DNA methylation
methylation
updated 2.6 years ago by ▴ 20 • written 2.7 years ago by ★ 1.5k
0
votes
0
replies
480
views
Ideas Regarding TF regulatory network
network
2.6 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
1.4k
views
CUT&RUN analysis pipeline
alignment sequencing
updated 2.6 years ago by 12k • written 2.6 years ago by ★ 1.5k
1
vote
1
reply
543
views
Bedtools to make a bed file for promoter
bedtools
updated 2.6 years ago by 11k • written 2.6 years ago by ★ 1.5k
1
vote
1
reply
857
views
DMR detection tools for whole genome bisulphite sequencing data in Plants
R
updated 2.7 years ago by ▴ 350 • written 2.7 years ago by ★ 1.5k
7
votes
6
replies
1.3k
views
Plant orthologous genes
gene
updated 2.8 years ago by 14k • written 2.8 years ago by ★ 1.5k
11
votes
4
replies
14k
views
Importing Network From Wgcna Into Cytoscape
cytoscape network
updated 16 months ago by ▴ 30 • written 10.4 years ago by ★ 1.5k
0
votes
0
replies
935
views
Comment: C: p value for permutation test for gene-interaction data
2.9 years ago by pixie@bioinfo ★ 1.5k
1
vote
3
replies
935
views
p value for permutation test for gene-interaction data
statistics
updated 2.9 years ago by 10k • written 2.9 years ago by ★ 1.5k
0
votes
0
replies
2.3k
views
Answer: A: How to combine two networks
3.0 years ago by pixie@bioinfo ★ 1.5k
3
votes
7
replies
2.6k
views
Statistical test for overlap
statistics
updated 3.0 years ago by ▴ 990 • written 3.0 years ago by ★ 1.5k
0
votes
0
replies
1.4k
views
Comment: C: Boxplots from ChIP-seq Data
3.2 years ago by pixie@bioinfo ★ 1.5k
3
votes
2
replies
1.4k
views
Boxplots from ChIP-seq Data
ChIP-Seq
updated 3.2 years ago by 8.7k • written 3.2 years ago by ★ 1.5k
0
votes
1
reply
702
views
Heatmap using Interaction/HiCHip data
ngs heatmap
3.3 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
756
views
Job: Post-Doctoral position (Bioinformatics) in the Chromosome Dynamics team at the Institut des Sciences des Plantes - Paris-Saclay (IPS2)
ChIP-Seq next-gen R Job
3.3 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
693
views
Finding over and under-represented interactions using HOMER
homer hic
3.4 years ago by pixie@bioinfo ★ 1.5k
2
votes
1
reply
6.8k
views
Answer: A: Cytoscape Plug-In For Retrieving Protein-Protein Interactions
updated 3.7 years ago by 39k • written 11.8 years ago by ★ 1.5k
246 results • Page 1 of 5
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