Hello, I am analyzing captureHiC data with HOMER by using the findHiCInteractionsByChr.pl module. I am running it as an sbatch script with the following parameters:
findHiCInteractionsByChr.pl $folder/ -res 2000 -pvalue 0.05 -zscore 0.5 -cpu 24 > $output/`basename $folder`_Interactions_byChr.txt"
However, I keep getting these segmentation faults in my error file. Although it gives me a list of significant loops, I do not know if the list is complete. Can anyone throw some light on this issue ? Is it because of memory problem ?
Average interaction count in regions = 153.4 +/- 180.2 (143.4 without outliers) Chr6 (avg coverage: 143.4, coverage ratio=1.051) Regions with too many or too few reads: 2.43% Total Significant Interactions: 6354 Reporting log2 values Segmentation fault Regions with too many or too few reads: 8.09% Total Significant Interactions: 3350 Reporting log2 values Segmentation fault